Clone BS05624 Report

Search the DGRC for BS05624

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptTom40-RA
Protein status:BS05624.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05624.3prime Sequence

830 bp (680 high quality bases) assembled on 2005-12-02

> BS05624.3prime
ATGGTCTAGAAAGCTTTTAGCCGATCATCAGCCCGCAGCCGAGTCTAAAG
TTGTTCTTCACGTGGTTCATGCGTCCGCTCAGGGCTAGTGTGAATGGCAA
TGGAGCCAGACGCTTCTCCAAAACACCAAAGATTTGCCAGTTGGAATCAA
TTCCGCCTCTGAAGACCAGATTCGCTTTGGGCAGATCGATCTGATACGCT
AACGTGGCCACCGACTCCTGCATCCGCAGACTGGTCTCCACCTCGGCACC
GATCTGCAGCTGGTCGCTGGCCTTCTGGTAGTAGCACACGTGCAGACCGC
TCTGACCCAGAGTCCCCGACCACACCGAGCTTCCAGCCGTATAGCGGCCC
ACGACGGACATAATAGCTATCTGACGGCCGGGGACGTTCGGACCGAACTG
GTAGGCCAGTTCGGAGCCCAGGGCGAGGGCTGGAGTGACTGACTGGAGAT
ATTGGCCAACGACCACGCCGGAGTTGGTGAATATGCTGGGATTGGCCACC
GTCAGCGAGAGGGTGTAATCACTACCGCGATAGTCGGTCGTCAGCTGTGA
GGCCACCACCTTGGACTCCTGGATCTGCGAAGCGAATTTGCAGCGCAGAC
GGGCAGAGAACTGATGGATAACATTGGCGTTGAGGTTGCCAGCCGGATCG
ATGTCGCCCAGGAGCACGGGAAAAGCTTCCGTGGGGCTGAACTCCTTGGT
GCCCACATAGGTGGCTCCGAAGCGATATCCACTGGGTACCACATTGCTCA
TGTTGATGGTGTGCGACACCTGGAAGTGGTTGCTCANGCCCTTGTTCAGC
ATGATCTTGGCGCCCTCGAAGGTGATGGGC

BS05624.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12157-PA 1035 Tom40-RA 224..1035 828..17 4041 99.8 Minus
CG12157-PB 1035 Tom40-RB 224..1035 828..17 4041 99.8 Minus
CG8330-PA 1023 tomboy40-RA 216..292 824..748 141 87 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tom40-RC 2395 CG12157-RC 646..1457 828..17 4049 99.9 Minus
Tom40-RB 1861 CG12157-RB 518..1329 828..17 4049 99.9 Minus
Tom40-RA 1676 CG12157-RA 333..1144 828..17 4049 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7738379..7738800 577..156 2110 100 Minus
X 23542271 X 7737882..7738135 828..575 1259 99.6 Minus
X 23542271 X 7738899..7739040 158..17 710 100 Minus
2R 25286936 2R 6225936..6226628 828..136 514 71.6 Minus
Blast to na_te.dros performed on 2015-02-12 17:54:25 has no hits.

BS05624.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:57 Download gff for BS05624.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom40-PB 222..1035 17..830 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:34 Download gff for BS05624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12157-PB 222..1035 17..830 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:04 Download gff for BS05624.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom40-RA 339..1154 13..830 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:09 Download gff for BS05624.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom40-RA 331..1146 13..830 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:09 Download gff for BS05624.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7737880..7738135 575..830 99 -> Minus
X 7738382..7738799 157..574 100 -> Minus
X 7738901..7739042 13..156 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:04 Download gff for BS05624.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7631913..7632168 575..830 99 -> Minus
arm_X 7632415..7632832 157..574 100 -> Minus
arm_X 7632934..7633075 13..156 98   Minus

BS05624.5prime Sequence

750 bp (695 high quality bases) assembled on 2005-12-02

> BS05624.5prime
GAAGTTATCAGTCGACATGGGCAACGTGCTAGCGGCTTCCTCCGGCGCCC
CAGGCAGTGGCGCCTCAAATCTGGGCCTCGGCCTACAGGAACCGGCTCCC
CTGCCCTCTAATTCCGGCTCACTGACCGAATCCTCTTCGTCCGCCGAAGG
CTTGGACTCACTTGCCGCCGCCAAGGACGCAGCGCTGGAGAATCCCGGCA
CCGTTGAGGAGCTTCACAAAAAGTGCAAAGATATCCAGGCCATCACCTTC
GAGGGCGCCAAGATCATGCTGAACAAGGGCCTGAGCAACCACTTCCAGGT
GTCGCACACCATCAACATGAGCAATGTGGTACCCAGTGGATATCGCTTCG
GAGCCACCTATGTGGGCACCAAGGAGTTCAGCCCCACGGAAGCTTTTCCC
GTGCTCCTGGGCGACATCGATCCGGCTGGCAACCTCAACGCCAATGTTAT
CCATCAGTTCTCTGCCCGTCTGCGCTGCAAATTCGCTTCGCAGATCCAGG
AGTCCAAGGTGGTGGCCTCACAGCTGACGACCGACTATCGCGGTAGTGAT
TACACCCTCTCGCTGACGGTGGCCAATCCCAGCATATTCACCAACTCCGG
CGTGGTCGTTGGCCAATATCTCCAGTCAGTCACTCCAGCCCTCGCCCTGN
GCTCCGAACTGGCCTACCAGTTCGGTCCGAACGTCCCCGGCCGTCAGATA
GCTATTATGTCCGTCGTGGGCCGCTATACGGCTGGAAGCTCGGTGTGGTC

BS05624.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12157-PA 1035 Tom40-RA 1..734 17..750 3651 99.8 Plus
CG12157-PB 1035 Tom40-RB 1..734 17..750 3651 99.8 Plus
CG8330-PA 1023 tomboy40-RA 205..292 233..320 190 88.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
Tom40-RC 2395 CG12157-RC 418..1156 12..750 3669 99.7 Plus
Tom40-RB 1861 CG12157-RB 290..1028 12..750 3669 99.7 Plus
Tom40-RA 1676 CG12157-RA 105..843 12..750 3669 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7737871..7738135 229..493 1325 100 Plus
X 23542271 X 7738379..7738638 491..750 1289 99.6 Plus
X 23542271 X 7737465..7737687 12..234 1085 99.1 Plus
2R 25286936 2R 6225929..6226275 233..579 520 76.7 Plus
Blast to na_te.dros performed on 2015-02-13 01:37:09 has no hits.

BS05624.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:58 Download gff for BS05624.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom40-PB 1..734 17..750 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:35 Download gff for BS05624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12157-PB 1..734 17..750 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:35:13 Download gff for BS05624.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom40-RA 110..851 9..750 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:22:31 Download gff for BS05624.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom40-RA 102..843 9..750 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:22:31 Download gff for BS05624.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7737462..7737683 9..230 99 -> Plus
X 7737873..7738135 231..493 100 -> Plus
X 7738382..7738638 494..750 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:35:13 Download gff for BS05624.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7631495..7631716 9..230 99 -> Plus
arm_X 7631906..7632168 231..493 100 -> Plus
arm_X 7632415..7632671 494..750 99   Plus

BS05624.complete Sequence

1067 bp (1067 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635171

> BS05624.complete
GAAGTTATCAGTCGACATGGGCAACGTGCTAGCGGCTTCCTCCGGCGCCC
CAGGCAGTGGCGCCTCAAATCTGGGCCTCGGCCTACAGGAACCGGCTCCC
CTGCCCTCTAATTCCGGCTCACTGACCGAATCCTCTTCGTCCGCCGAAGG
CTTGGACTCACTTGCCGCCGCCAAGGACGCAGCGCTGGAGAATCCCGGCA
CCGTTGAGGAGCTTCACAAAAAGTGCAAAGATATCCAGGCCATCACCTTC
GAGGGCGCCAAGATCATGCTGAACAAGGGCCTGAGCAACCACTTCCAGGT
GTCGCACACCATCAACATGAGCAATGTGGTACCCAGTGGATATCGCTTCG
GAGCCACCTATGTGGGCACCAAGGAGTTCAGCCCCACGGAAGCTTTTCCC
GTGCTCCTGGGCGACATCGATCCGGCTGGCAACCTCAACGCCAATGTTAT
CCATCAGTTCTCTGCCCGTCTGCGCTGCAAATTCGCTTCGCAGATCCAGG
AGTCCAAGGTGGTGGCCTCACAGCTGACGACCGACTATCGCGGTAGTGAT
TACACCCTCTCGCTGACGGTGGCCAATCCCAGCATATTCACCAACTCCGG
CGTGGTCGTTGGCCAATATCTCCAGTCAGTCACTCCAGCCCTCGCCCTGG
GCTCCGAACTGGCCTACCAGTTCGGTCCGAACGTCCCCGGCCGTCAGATA
GCTATTATGTCCGTCGTGGGCCGCTATACGGCTGGAAGCTCGGTGTGGTC
GGGGACTCTGGGTCAGAGCGGTCTGCACGTGTGCTACTACCAGAAGGCCA
GCGACCAGCTGCAGATCGGTGCCGAGGTGGAGACCAGTCTGCGGATGCAG
GAGTCGGTGGCCACGTTAGCGTATCAGATCGATCTGCCCAAAGCGAATCT
GGTCTTCAGAGGCGGAATTGATTCCAACTGGCAAATCTTTGGTGTTTTGG
AGAAGCGTCTGGCTCCATTGCCATTCACACTAGCCCTGAGCGGACGCATG
AACCACGTGAAGAACAACTTTAGACTCGGCTGCGGGCTGATGATCGGCTA
AAAGCTTTCTAGACCAT

BS05624.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Tom40-RC 1035 CG12157-PC 1..1035 17..1051 5175 100 Plus
Tom40-RB 1035 CG12157-PB 1..1035 17..1051 5175 100 Plus
Tom40-RA 1035 CG12157-PA 1..1035 17..1051 5175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tom40-RC 2395 CG12157-RC 418..1457 12..1051 5185 99.9 Plus
Tom40-RB 1861 CG12157-RB 290..1329 12..1051 5185 99.9 Plus
Tom40-RA 1676 CG12157-RA 105..1144 12..1051 5185 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7738379..7738800 491..912 2110 100 Plus
X 23542271 X 7737871..7738135 229..493 1325 100 Plus
X 23542271 X 7737465..7737687 12..234 1085 99.1 Plus
X 23542271 X 7738899..7739040 910..1051 710 100 Plus
2R 25286936 2R 6225929..6226628 233..932 560 72 Plus
Blast to na_te.dros performed on 2014-11-27 08:08:57 has no hits.

BS05624.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:24 Download gff for BS05624.complete
Subject Subject Range Query Range Percent Splice Strand
Tom40-RB 1..1035 17..1051 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:16 Download gff for BS05624.complete
Subject Subject Range Query Range Percent Splice Strand
Tom40-RB 291..1335 9..1055 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:50 Download gff for BS05624.complete
Subject Subject Range Query Range Percent Splice Strand
Tom40-RA 118..1150 17..1049 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:24 Download gff for BS05624.complete
Subject Subject Range Query Range Percent Splice Strand
Tom40-RB 291..1335 9..1055 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:55 Download gff for BS05624.complete
Subject Subject Range Query Range Percent Splice Strand
Tom40-RA 110..1142 17..1049 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:55 Download gff for BS05624.complete
Subject Subject Range Query Range Percent Splice Strand
X 7737470..7737683 17..230 100 -> Plus
X 7737873..7738135 231..493 100 -> Plus
X 7738382..7738799 494..911 100 -> Plus
X 7738901..7739038 912..1049 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:50 Download gff for BS05624.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7631503..7631716 17..230 100 -> Plus
arm_X 7631906..7632168 231..493 100 -> Plus
arm_X 7632415..7632832 494..911 100 -> Plus
arm_X 7632934..7633071 912..1049 100   Plus

BS05624.pep Sequence

Translation from 16 to 1050

> BS05624.pep
MGNVLAASSGAPGSGASNLGLGLQEPAPLPSNSGSLTESSSSAEGLDSLA
AAKDAALENPGTVEELHKKCKDIQAITFEGAKIMLNKGLSNHFQVSHTIN
MSNVVPSGYRFGATYVGTKEFSPTEAFPVLLGDIDPAGNLNANVIHQFSA
RLRCKFASQIQESKVVASQLTTDYRGSDYTLSLTVANPSIFTNSGVVVGQ
YLQSVTPALALGSELAYQFGPNVPGRQIAIMSVVGRYTAGSSVWSGTLGQ
SGLHVCYYQKASDQLQIGAEVETSLRMQESVATLAYQIDLPKANLVFRGG
IDSNWQIFGVLEKRLAPLPFTLALSGRMNHVKNNFRLGCGLMIG*

BS05624.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
Tom40-PC 344 CG12157-PC 1..344 1..344 1748 100 Plus
Tom40-PB 344 CG12157-PB 1..344 1..344 1748 100 Plus
Tom40-PA 344 CG12157-PA 1..344 1..344 1748 100 Plus
tomboy40-PA 340 CG8330-PA 1..340 1..344 1211 68.7 Plus
CG4520-PB 320 CG4520-PB 32..306 58..338 204 24.8 Plus