Clone Sequence Records
BS05624.3prime Sequence
830 bp (680 high quality bases) assembled on 2005-12-02
> BS05624.3prime
ATGGTCTAGAAAGCTTTTAGCCGATCATCAGCCCGCAGCCGAGTCTAAAG
TTGTTCTTCACGTGGTTCATGCGTCCGCTCAGGGCTAGTGTGAATGGCAA
TGGAGCCAGACGCTTCTCCAAAACACCAAAGATTTGCCAGTTGGAATCAA
TTCCGCCTCTGAAGACCAGATTCGCTTTGGGCAGATCGATCTGATACGCT
AACGTGGCCACCGACTCCTGCATCCGCAGACTGGTCTCCACCTCGGCACC
GATCTGCAGCTGGTCGCTGGCCTTCTGGTAGTAGCACACGTGCAGACCGC
TCTGACCCAGAGTCCCCGACCACACCGAGCTTCCAGCCGTATAGCGGCCC
ACGACGGACATAATAGCTATCTGACGGCCGGGGACGTTCGGACCGAACTG
GTAGGCCAGTTCGGAGCCCAGGGCGAGGGCTGGAGTGACTGACTGGAGAT
ATTGGCCAACGACCACGCCGGAGTTGGTGAATATGCTGGGATTGGCCACC
GTCAGCGAGAGGGTGTAATCACTACCGCGATAGTCGGTCGTCAGCTGTGA
GGCCACCACCTTGGACTCCTGGATCTGCGAAGCGAATTTGCAGCGCAGAC
GGGCAGAGAACTGATGGATAACATTGGCGTTGAGGTTGCCAGCCGGATCG
ATGTCGCCCAGGAGCACGGGAAAAGCTTCCGTGGGGCTGAACTCCTTGGT
GCCCACATAGGTGGCTCCGAAGCGATATCCACTGGGTACCACATTGCTCA
TGTTGATGGTGTGCGACACCTGGAAGTGGTTGCTCANGCCCTTGTTCAGC
ATGATCTTGGCGCCCTCGAAGGTGATGGGC
BS05624.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12157-PA | 1035 | Tom40-RA | 224..1035 | 828..17 | 4041 | 99.8 | Minus |
CG12157-PB | 1035 | Tom40-RB | 224..1035 | 828..17 | 4041 | 99.8 | Minus |
CG8330-PA | 1023 | tomboy40-RA | 216..292 | 824..748 | 141 | 87 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom40-RC | 2395 | CG12157-RC | 646..1457 | 828..17 | 4049 | 99.9 | Minus |
Tom40-RB | 1861 | CG12157-RB | 518..1329 | 828..17 | 4049 | 99.9 | Minus |
Tom40-RA | 1676 | CG12157-RA | 333..1144 | 828..17 | 4049 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7738379..7738800 | 577..156 | 2110 | 100 | Minus |
X | 23542271 | X | 7737882..7738135 | 828..575 | 1259 | 99.6 | Minus |
X | 23542271 | X | 7738899..7739040 | 158..17 | 710 | 100 | Minus |
2R | 25286936 | 2R | 6225936..6226628 | 828..136 | 514 | 71.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:54:25 has no hits.
BS05624.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:57 Download gff for
BS05624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-PB | 222..1035 | 17..830 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:34 Download gff for
BS05624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12157-PB | 222..1035 | 17..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:04 Download gff for
BS05624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RA | 339..1154 | 13..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:09 Download gff for
BS05624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RA | 331..1146 | 13..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:09 Download gff for
BS05624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7737880..7738135 | 575..830 | 99 | -> | Minus |
X | 7738382..7738799 | 157..574 | 100 | -> | Minus |
X | 7738901..7739042 | 13..156 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:04 Download gff for
BS05624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7631913..7632168 | 575..830 | 99 | -> | Minus |
arm_X | 7632415..7632832 | 157..574 | 100 | -> | Minus |
arm_X | 7632934..7633075 | 13..156 | 98 | | Minus |
BS05624.5prime Sequence
750 bp (695 high quality bases) assembled on 2005-12-02
> BS05624.5prime
GAAGTTATCAGTCGACATGGGCAACGTGCTAGCGGCTTCCTCCGGCGCCC
CAGGCAGTGGCGCCTCAAATCTGGGCCTCGGCCTACAGGAACCGGCTCCC
CTGCCCTCTAATTCCGGCTCACTGACCGAATCCTCTTCGTCCGCCGAAGG
CTTGGACTCACTTGCCGCCGCCAAGGACGCAGCGCTGGAGAATCCCGGCA
CCGTTGAGGAGCTTCACAAAAAGTGCAAAGATATCCAGGCCATCACCTTC
GAGGGCGCCAAGATCATGCTGAACAAGGGCCTGAGCAACCACTTCCAGGT
GTCGCACACCATCAACATGAGCAATGTGGTACCCAGTGGATATCGCTTCG
GAGCCACCTATGTGGGCACCAAGGAGTTCAGCCCCACGGAAGCTTTTCCC
GTGCTCCTGGGCGACATCGATCCGGCTGGCAACCTCAACGCCAATGTTAT
CCATCAGTTCTCTGCCCGTCTGCGCTGCAAATTCGCTTCGCAGATCCAGG
AGTCCAAGGTGGTGGCCTCACAGCTGACGACCGACTATCGCGGTAGTGAT
TACACCCTCTCGCTGACGGTGGCCAATCCCAGCATATTCACCAACTCCGG
CGTGGTCGTTGGCCAATATCTCCAGTCAGTCACTCCAGCCCTCGCCCTGN
GCTCCGAACTGGCCTACCAGTTCGGTCCGAACGTCCCCGGCCGTCAGATA
GCTATTATGTCCGTCGTGGGCCGCTATACGGCTGGAAGCTCGGTGTGGTC
BS05624.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12157-PA | 1035 | Tom40-RA | 1..734 | 17..750 | 3651 | 99.8 | Plus |
CG12157-PB | 1035 | Tom40-RB | 1..734 | 17..750 | 3651 | 99.8 | Plus |
CG8330-PA | 1023 | tomboy40-RA | 205..292 | 233..320 | 190 | 88.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom40-RC | 2395 | CG12157-RC | 418..1156 | 12..750 | 3669 | 99.7 | Plus |
Tom40-RB | 1861 | CG12157-RB | 290..1028 | 12..750 | 3669 | 99.7 | Plus |
Tom40-RA | 1676 | CG12157-RA | 105..843 | 12..750 | 3669 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7737871..7738135 | 229..493 | 1325 | 100 | Plus |
X | 23542271 | X | 7738379..7738638 | 491..750 | 1289 | 99.6 | Plus |
X | 23542271 | X | 7737465..7737687 | 12..234 | 1085 | 99.1 | Plus |
2R | 25286936 | 2R | 6225929..6226275 | 233..579 | 520 | 76.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:37:09 has no hits.
BS05624.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:58 Download gff for
BS05624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-PB | 1..734 | 17..750 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:35 Download gff for
BS05624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12157-PB | 1..734 | 17..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:35:13 Download gff for
BS05624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RA | 110..851 | 9..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:22:31 Download gff for
BS05624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RA | 102..843 | 9..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:22:31 Download gff for
BS05624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7737462..7737683 | 9..230 | 99 | -> | Plus |
X | 7737873..7738135 | 231..493 | 100 | -> | Plus |
X | 7738382..7738638 | 494..750 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:35:13 Download gff for
BS05624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7631495..7631716 | 9..230 | 99 | -> | Plus |
arm_X | 7631906..7632168 | 231..493 | 100 | -> | Plus |
arm_X | 7632415..7632671 | 494..750 | 99 | | Plus |
BS05624.complete Sequence
1067 bp (1067 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635171
> BS05624.complete
GAAGTTATCAGTCGACATGGGCAACGTGCTAGCGGCTTCCTCCGGCGCCC
CAGGCAGTGGCGCCTCAAATCTGGGCCTCGGCCTACAGGAACCGGCTCCC
CTGCCCTCTAATTCCGGCTCACTGACCGAATCCTCTTCGTCCGCCGAAGG
CTTGGACTCACTTGCCGCCGCCAAGGACGCAGCGCTGGAGAATCCCGGCA
CCGTTGAGGAGCTTCACAAAAAGTGCAAAGATATCCAGGCCATCACCTTC
GAGGGCGCCAAGATCATGCTGAACAAGGGCCTGAGCAACCACTTCCAGGT
GTCGCACACCATCAACATGAGCAATGTGGTACCCAGTGGATATCGCTTCG
GAGCCACCTATGTGGGCACCAAGGAGTTCAGCCCCACGGAAGCTTTTCCC
GTGCTCCTGGGCGACATCGATCCGGCTGGCAACCTCAACGCCAATGTTAT
CCATCAGTTCTCTGCCCGTCTGCGCTGCAAATTCGCTTCGCAGATCCAGG
AGTCCAAGGTGGTGGCCTCACAGCTGACGACCGACTATCGCGGTAGTGAT
TACACCCTCTCGCTGACGGTGGCCAATCCCAGCATATTCACCAACTCCGG
CGTGGTCGTTGGCCAATATCTCCAGTCAGTCACTCCAGCCCTCGCCCTGG
GCTCCGAACTGGCCTACCAGTTCGGTCCGAACGTCCCCGGCCGTCAGATA
GCTATTATGTCCGTCGTGGGCCGCTATACGGCTGGAAGCTCGGTGTGGTC
GGGGACTCTGGGTCAGAGCGGTCTGCACGTGTGCTACTACCAGAAGGCCA
GCGACCAGCTGCAGATCGGTGCCGAGGTGGAGACCAGTCTGCGGATGCAG
GAGTCGGTGGCCACGTTAGCGTATCAGATCGATCTGCCCAAAGCGAATCT
GGTCTTCAGAGGCGGAATTGATTCCAACTGGCAAATCTTTGGTGTTTTGG
AGAAGCGTCTGGCTCCATTGCCATTCACACTAGCCCTGAGCGGACGCATG
AACCACGTGAAGAACAACTTTAGACTCGGCTGCGGGCTGATGATCGGCTA
AAAGCTTTCTAGACCAT
BS05624.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom40-RC | 1035 | CG12157-PC | 1..1035 | 17..1051 | 5175 | 100 | Plus |
Tom40-RB | 1035 | CG12157-PB | 1..1035 | 17..1051 | 5175 | 100 | Plus |
Tom40-RA | 1035 | CG12157-PA | 1..1035 | 17..1051 | 5175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom40-RC | 2395 | CG12157-RC | 418..1457 | 12..1051 | 5185 | 99.9 | Plus |
Tom40-RB | 1861 | CG12157-RB | 290..1329 | 12..1051 | 5185 | 99.9 | Plus |
Tom40-RA | 1676 | CG12157-RA | 105..1144 | 12..1051 | 5185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7738379..7738800 | 491..912 | 2110 | 100 | Plus |
X | 23542271 | X | 7737871..7738135 | 229..493 | 1325 | 100 | Plus |
X | 23542271 | X | 7737465..7737687 | 12..234 | 1085 | 99.1 | Plus |
X | 23542271 | X | 7738899..7739040 | 910..1051 | 710 | 100 | Plus |
2R | 25286936 | 2R | 6225929..6226628 | 233..932 | 560 | 72 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:08:57 has no hits.
BS05624.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:24 Download gff for
BS05624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RB | 1..1035 | 17..1051 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:16 Download gff for
BS05624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RB | 291..1335 | 9..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:50 Download gff for
BS05624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RA | 118..1150 | 17..1049 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:24 Download gff for
BS05624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RB | 291..1335 | 9..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:55 Download gff for
BS05624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RA | 110..1142 | 17..1049 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:55 Download gff for
BS05624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7737470..7737683 | 17..230 | 100 | -> | Plus |
X | 7737873..7738135 | 231..493 | 100 | -> | Plus |
X | 7738382..7738799 | 494..911 | 100 | -> | Plus |
X | 7738901..7739038 | 912..1049 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:50 Download gff for
BS05624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7631503..7631716 | 17..230 | 100 | -> | Plus |
arm_X | 7631906..7632168 | 231..493 | 100 | -> | Plus |
arm_X | 7632415..7632832 | 494..911 | 100 | -> | Plus |
arm_X | 7632934..7633071 | 912..1049 | 100 | | Plus |
BS05624.pep Sequence
Translation from 16 to 1050
> BS05624.pep
MGNVLAASSGAPGSGASNLGLGLQEPAPLPSNSGSLTESSSSAEGLDSLA
AAKDAALENPGTVEELHKKCKDIQAITFEGAKIMLNKGLSNHFQVSHTIN
MSNVVPSGYRFGATYVGTKEFSPTEAFPVLLGDIDPAGNLNANVIHQFSA
RLRCKFASQIQESKVVASQLTTDYRGSDYTLSLTVANPSIFTNSGVVVGQ
YLQSVTPALALGSELAYQFGPNVPGRQIAIMSVVGRYTAGSSVWSGTLGQ
SGLHVCYYQKASDQLQIGAEVETSLRMQESVATLAYQIDLPKANLVFRGG
IDSNWQIFGVLEKRLAPLPFTLALSGRMNHVKNNFRLGCGLMIG*
BS05624.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom40-PC | 344 | CG12157-PC | 1..344 | 1..344 | 1748 | 100 | Plus |
Tom40-PB | 344 | CG12157-PB | 1..344 | 1..344 | 1748 | 100 | Plus |
Tom40-PA | 344 | CG12157-PA | 1..344 | 1..344 | 1748 | 100 | Plus |
tomboy40-PA | 340 | CG8330-PA | 1..340 | 1..344 | 1211 | 68.7 | Plus |
CG4520-PB | 320 | CG4520-PB | 32..306 | 58..338 | 204 | 24.8 | Plus |