Clone Sequence Records
BS05626.3prime Sequence
925 bp (760 high quality bases) assembled on 2005-12-02
> BS05626.3prime
ATGGTCTAGAAAGCTTCTAACGAGAGCTGTCACTGCTATTGCTGCGGCGT
CGACGACGAATGGGGGAGCGGGAGCGACGCCGTGGTGAACGCCGGTTCCT
CATGGGTGACTGACGACGTCCGCCGCCGCCGCCACCACCTCCTCCACGAT
TGTTGAACCTATTGAACTGGGGTGGGGATCGCCAGCGGTTGTTTTGCGGA
CGGCGCATCGGTGGCGAAGGACGACGCATGGGCGGCCTCTGTTTTACTAA
GACAACCGGGGATACCGTAATCTCCTGGCCATCTATCTGCCCGCCATCCA
TATGCTTCATGGCCGACTCACAATCCTCGGGTGTGGCATATTCCACAAAC
GCCACGCCGCGTCCGAAGTTAGGATGAAAACGATCTACGGGAAACTCCAC
ATTCTTCACATCCCCAAAGCTGCTAAATATCTCGAACACATGGTCCTTGG
TAACGTTGCGGGTAAGCCGACCGACATGAATGCGCACCTGTTTGGGCGAA
GGCGAGCGAGTCCGCGAACGGGAGCGCTCCCTTCGCTTCGGTGGCGGCGT
CCTCTCAACGGAGCCGCGACCACGACGGCGTGGCGATCGTGAACGACTGG
CTGAGCGAGAACGCTCCCGCTTAACATTATTGCTATCGGCGGCTGCCCTA
TCGTTGGATCCAGCACGGCGGGCACGATCCCTCGACCGACTACGACGATC
GCGATCTCGCTCCGGCTCTTTTCGCGCCTTGCTGCCCGGTCTTGGAGATT
TGGAGACACGCCTGGGGGAACGGGTGCGAGAGCGGGAACGTGATCGGGCG
CTGGGCTTATCCTTGTCTTTGTCTTTGCCAGCAGCGCCGCCCGCACGTCT
TCGGTTCTTCTCGCTGCGATCCGAATCGCTGGACGACGATGATGAGGAGC
TCGAGGAGTCGCTGGAGCTGCTTGA
BS05626.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16788-PA | 1125 | RnpS1-RA | 217..1125 | 925..17 | 4495 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnpS1-RA | 1370 | CG16788-RA | 366..1275 | 925..16 | 4520 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9552743..9553652 | 925..16 | 4520 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:13:58 has no hits.
BS05626.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:02 Download gff for
BS05626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-PA | 218..1125 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:40 Download gff for
BS05626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16788-PA | 218..1125 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:46:51 Download gff for
BS05626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-RA | 367..1275 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:47 Download gff for
BS05626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-RA | 367..1275 | 16..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:47 Download gff for
BS05626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9552744..9553652 | 16..924 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:46:51 Download gff for
BS05626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5378466..5379374 | 16..924 | 99 | | Minus |
BS05626.5prime Sequence
982 bp (802 high quality bases) assembled on 2005-11-29
> BS05626.5prime
GAAGTTATCAGTCGACATGGCGCGTGCCCAGAGTCTCGCCGGCGAGGGTG
AGAAGGAAAAGGACAACAAGGAGAAGGTCGCCAAAGAGAAGGACGGCAAG
GCGACCAGCGGCTCCTCGCGCAGGGACCGCGAACGCAAACGCCGCGGATC
GGCGTCCTCCAGCAGCGACTCCAGAAGCAGCACATCGGACAGCAGCTCTT
CGCGGAGCAGTTCCGGGTCATCGCGTTCCAGCTCAAGCAGCTCCAGCGAC
TCCTCGAGCTCCTCATCATCGTCGTCCAGCGATTCGGATCGCAGCGAGAA
GAACCGAAGACGTGGCGGCGGCGCTGCTGGCAAAGACAAAGACAAGGATA
AGCCCAGCGCCCGATCACGTTCCCGCTCTCGCACCCGTTCCCCCAGGCGT
GTCTCCAAATCTCCAAGACCGGGCAGCAAGGCGCGAAAAGAGCCGGAGCG
AGATCGCGATCGTCGTAGTCGGTCGAGGGATCGTGCCCGCCGTGCTGGAT
CCAACGATAGGGCAGCCGCCGATAGCAATAATGTTAAGCGGGAGCGTTCT
CGCTCAGCCAGTCGTTCACGATCGCCACGCCGTCGTGGTCGCGGCTCCGT
TGAGAGGACGCCGCCACCGAAGCGAAGGGAGCGCTCCCGTTCGCGGACTC
GCTCGCCTTCGCCCAAACAGGTGCGCATTCATGTCGGTCGGCTTACCCGC
AACGTTACCAAGGACCATGTGTTCGAGATATTTAGCAGCTTTGGGGATGT
GAAGAATGTGGAGTTTCCCGTAGATCGTTTTCATCCTAACTTCGGACGCG
GCGTGGCGTTTGTGGAATATGCCACACCCGAGGATTGTGAGTCGGCCATG
AAGCATATGGATGGGGGGCAGATAGATGGCCAGGAGATTACGGTATCCCC
GGTTGTCTTAATAAACAGAGGCCGCCCATGCGTCGTCCTTCGCACCGATG
CGCCGTCCGCAAACAACCGCTGGCGATCCCCC
BS05626.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16788-PA | 1125 | RnpS1-RA | 1..894 | 17..910 | 4445 | 99.8 | Plus |
| CG16788-PA | 1125 | RnpS1-RA | 898..928 | 913..943 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnpS1-RA | 1370 | CG16788-RA | 150..1117 | 17..981 | 4735 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9552688..9553494 | 178..981 | 3855 | 99.4 | Plus |
| 3R | 32079331 | 3R | 9552257..9552422 | 15..180 | 815 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:23:56 has no hits.
BS05626.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:03 Download gff for
BS05626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-PA | 1..968 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:42 Download gff for
BS05626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16788-PA | 1..968 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:10:47 Download gff for
BS05626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-RA | 140..1117 | 9..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:34 Download gff for
BS05626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-RA | 140..1117 | 9..982 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:34 Download gff for
BS05626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9552257..9552422 | 15..180 | 99 | -> | Plus |
| 3R | 9552691..9553494 | 181..982 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:10:47 Download gff for
BS05626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5377979..5378144 | 15..180 | 99 | -> | Plus |
| arm_3R | 5378413..5379216 | 181..982 | 99 | | Plus |
BS05626.complete Sequence
1157 bp (1157 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635173
> BS05626.complete
GAAGTTATCAGTCGACATGGCGCGTGCCCAGAGTCTCGCCGGCGAGGGTG
AGAAGGAAAAGGACAACAAGGAGAAGGTCGCCAAAGAGAAGGACGGCAAG
GCGACCAGCGGCTCCTCGCGCAGGGACCGCGAACGCAAACGCCGCGGATC
GGCGTCCTCCAGCAGCGACTCCAGAAGCAGCACATCGGACAGCAGCTCTT
CGCGGAGCAGTTCCGGGTCATCGCGTTCCAGCTCAAGCAGCTCCAGCGAC
TCCTCGAGCTCCTCATCATCGTCGTCCAGCGATTCGGATCGCAGCGAGAA
GAACCGAAGACGTGGCGGCGGCGCTGCTGGCAAAGACAAAGACAAGGATA
AGCCCAGCGCCCGATCACGTTCCCGCTCTCGCACCCGTTCCCCCAGGCGT
GTCTCCAAATCTCCAAGACCGGGCAGCAAGGCGCGAAAAGAGCCGGAGCG
AGATCGCGATCGTCGTAGTCGGTCGAGGGATCGTGCCCGCCGTGCTGGAT
CCAACGATAGGGCAGCCGCCGATAGCAATAATGTTAAGCGGGAGCGTTCT
CGCTCAGCCAGTCGTTCACGATCGCCACGCCGTCGTGGTCGCGGCTCCGT
TGAGAGGACGCCGCCACCGAAGCGAAGGGAGCGCTCCCGTTCGCGGACTC
GCTCGCCTTCGCCCAAACAGGTGCGCATTCATGTCGGTCGGCTTACCCGC
AACGTTACCAAGGACCATGTGTTCGAGATATTTAGCAGCTTTGGGGATGT
GAAGAATGTGGAGTTTCCCGTAGATCGTTTTCATCCTAACTTCGGACGCG
GCGTGGCGTTTGTGGAATATGCCACACCCGAGGATTGTGAGTCGGCCATG
AAGCATATGGATGGCGGGCAGATAGATGGCCAGGAGATTACGGTATCCCC
GGTTGTCTTAGTAAAACAGAGGCCGCCCATGCGTCGTCCTTCGCCACCGA
TGCGCCGTCCGCAAAACAACCGCTGGCGATCCCCACCCCAGTTCAATAGG
TTCAACAATCGTGGAGGAGGTGGTGGCGGCGGCGGCGGACGTCGTCAGTC
ACCCATGAGGAACCGGCGTTCACCACGGCGTCGCTCCCGCTCCCCCATTC
GTCGTCGACGCCGCAGCAATAGCAGTGACAGCTCTCGTTAGAAGCTTTCT
AGACCAT
BS05626.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnpS1-RA | 1125 | CG16788-PA | 1..1125 | 17..1141 | 5625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnpS1-RA | 1370 | CG16788-RA | 150..1275 | 17..1142 | 5630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9552688..9553652 | 178..1142 | 4825 | 100 | Plus |
| 3R | 32079331 | 3R | 9552257..9552422 | 15..180 | 815 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:48:55 has no hits.
BS05626.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:02 Download gff for
BS05626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-RA | 1..1125 | 17..1141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:51 Download gff for
BS05626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-RA | 131..1266 | 9..1142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:26 Download gff for
BS05626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-RA | 150..1274 | 17..1141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:03 Download gff for
BS05626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-RA | 131..1266 | 9..1142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:48 Download gff for
BS05626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-RA | 150..1274 | 17..1141 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:48 Download gff for
BS05626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9552259..9552422 | 17..180 | 99 | -> | Plus |
| 3R | 9552691..9553651 | 181..1141 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:26 Download gff for
BS05626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5377981..5378144 | 17..180 | 99 | -> | Plus |
| arm_3R | 5378413..5379373 | 181..1141 | 100 | | Plus |
BS05626.pep Sequence
Translation from 16 to 1140
> BS05626.pep
MARAQSLAGEGEKEKDNKEKVAKEKDGKATSGSSRRDRERKRRGSASSSS
DSRSSTSDSSSSRSSSGSSRSSSSSSSDSSSSSSSSSSDSDRSEKNRRRG
GGAAGKDKDKDKPSARSRSRSRTRSPRRVSKSPRPGSKARKEPERDRDRR
SRSRDRARRAGSNDRAAADSNNVKRERSRSASRSRSPRRRGRGSVERTPP
PKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEF
PVDRFHPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVK
QRPPMRRPSPPMRRPQNNRWRSPPQFNRFNNRGGGGGGGGGRRQSPMRNR
RSPRRRSRSPIRRRRRSNSSDSSR*
BS05626.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnpS1-PA | 374 | CG16788-PA | 1..374 | 1..374 | 1901 | 100 | Plus |
| CG34334-PA | 708 | CG34334-PA | 342..679 | 1..374 | 365 | 30.6 | Plus |
| Caper-PB | 594 | CG11266-PB | 30..318 | 23..302 | 265 | 30 | Plus |
| Caper-PA | 594 | CG11266-PA | 30..318 | 23..302 | 265 | 30 | Plus |
| SRm160-PA | 954 | CG11274-PA | 120..473 | 19..374 | 244 | 28 | Plus |
