Clone Sequence Records
BS05627.3prime Sequence
354 bp (353 high quality bases) assembled on 2005-12-02
> BS05627.3prime
ATGGTCTAGAAAGCTTTTACGCCTTCACCAGCTTTGCCATCATGTTGGTC
AGCTTGTGCTCGTCGGCGCCGGCAAAGGAGGCCAAGCGTCGATTTTGGCG
CAAAAAGACAAACGTTGGCATGCTGCGCACCTTGTAGCGCTCCGTCAGCT
CCTCGAATTTGTCCACATCGATCTTGAGCACCACCGCCTTGCTGGAGTAT
TTTCTGGCCAGCGATTTGACGGTGCTCTCCATTTCCTTGCAGGGACCACA
CCATGTCGCATAGAAATCCAGCACGATTAGCTTGTCGTCGGCCGCCTCGA
TGCGCTTGTGATAGTCGTTCATGGTGCGTACGGATGCCATGTCGACTGAT
AACT
BS05627.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4193-PA | 324 | dhd-RA | 1..324 | 340..17 | 1595 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dhd-RB | 952 | CG4193-RB | 290..613 | 340..17 | 1605 | 99.7 | Minus |
dhd-RA | 772 | CG4193-RA | 107..430 | 340..17 | 1605 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5312460..5312783 | 340..17 | 1605 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:48:27 has no hits.
BS05627.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:04 Download gff for
BS05627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dhd-PA | 1..324 | 17..340 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:43 Download gff for
BS05627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4193-PA | 1..324 | 17..340 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:37:03 Download gff for
BS05627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dhd-RA | 100..439 | 9..348 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:11:16 Download gff for
BS05627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dhd-RA | 100..439 | 9..348 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:11:16 Download gff for
BS05627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5312453..5312792 | 9..348 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:37:03 Download gff for
BS05627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5206486..5206825 | 9..348 | 97 | | Minus |
BS05627.5prime Sequence
354 bp (353 high quality bases) assembled on 2005-12-02
> BS05627.5prime
GAAGTTATCAGTCGACATGGCATCCGTACGCACCATGAACGACTATCACA
AGCGCATCGAGGCGGCCGACGACAAGCTAATCGTGCTGGATTTCTATGCG
ACATGGTGTGGTCCCTGCAAGGAAATGGAGAGCACCGTCAAATCGCTGGC
CAGAAAATACTCCAGCAAGGCGGTGGTGCTCAAGATCGATGTGGACAAAT
TCGAGGAGCTGACGGAGCGCTACAAGGTGCGCAGCATGCCAACGTTTGTC
TTTTTGCGCCAAAATCGACGCTTGGCCTCCTTTGCCGGCGCCGACGAGCA
CAAGCTGACCAACATGATGGCAAAGCTGGTGAAGGCGTAAAAGCTTTCTA
GACC
BS05627.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4193-PA | 324 | dhd-RA | 1..324 | 17..340 | 1595 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dhd-RB | 952 | CG4193-RB | 290..613 | 17..340 | 1605 | 99.7 | Plus |
dhd-RA | 772 | CG4193-RA | 107..430 | 17..340 | 1605 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5312460..5312783 | 17..340 | 1605 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:59:15 has no hits.
BS05627.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:05 Download gff for
BS05627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dhd-PA | 1..324 | 17..340 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:44 Download gff for
BS05627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4193-PA | 1..324 | 17..340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:13:20 Download gff for
BS05627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dhd-RA | 100..439 | 9..348 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:52 Download gff for
BS05627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dhd-RA | 100..439 | 9..348 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:52 Download gff for
BS05627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5312453..5312792 | 9..348 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:13:20 Download gff for
BS05627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5206486..5206825 | 9..348 | 97 | | Plus |
BS05627.complete Sequence
356 bp assembled on 2009-02-12
GenBank Submission: KX800127
> BS05627.complete
GAAGTTATCAGTCGACATGGCATCCGTACGCACCATGAACGACTATCACA
AGCGCATCGAGGCGGCCGACGACAAGCTAATCGTGCTGGATTTCTATGCG
ACATGGTGTGGTCCCTGCAAGGAAATGGAGAGCACCGTCAAATCGCTGGC
CAGAAAATACTCCAGCAAGGCGGTGGTGCTCAAGATCGATGTGGACAAAT
TCGAGGAGCTGACGGAGCGCTACAAGGTGCGCAGCATGCCAACGTTTGTC
TTTTTGCGCCAAAATCGACGCTTGGCCTCCTTTGCCGGCGCCGACGAGCA
CAAGCTGACCAACATGATGGCAAAGCTGGTGAAGGCGTAAAAGCTTTCTA
GACCAT
BS05627.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dhd-RB | 324 | CG4193-PB | 1..324 | 17..340 | 1605 | 99.7 | Plus |
dhd-RA | 324 | CG4193-PA | 1..324 | 17..340 | 1605 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dhd-RB | 952 | CG4193-RB | 290..613 | 17..340 | 1605 | 99.7 | Plus |
dhd-RA | 772 | CG4193-RA | 107..430 | 17..340 | 1605 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5312460..5312783 | 17..340 | 1605 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:52:59 has no hits.
BS05627.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:21 Download gff for
BS05627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dhd-RA | 88..409 | 17..338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:24 Download gff for
BS05627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dhd-RA | 107..428 | 17..338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:50 Download gff for
BS05627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dhd-RA | 107..428 | 17..338 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:50 Download gff for
BS05627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5312460..5312781 | 17..338 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:24 Download gff for
BS05627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5206493..5206814 | 17..338 | 99 | | Plus |
BS05627.pep Sequence
Translation from 16 to 339
> BS05627.pep
MASVRTMNDYHKRIEAADDKLIVLDFYATWCGPCKEMESTVKSLARKYSS
KAVVLKIDVDKFEELTERYKVRSMPTFVFLRQNRRLASFAGADEHKLTNM
MAKLVKA*
BS05627.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dhd-PB | 107 | CG4193-PB | 1..107 | 1..107 | 545 | 100 | Plus |
dhd-PA | 107 | CG4193-PA | 1..107 | 1..107 | 545 | 100 | Plus |
TrxT-PB | 157 | CG3315-PB | 5..104 | 4..103 | 251 | 46 | Plus |
TrxT-PA | 157 | CG3315-PA | 5..104 | 4..103 | 251 | 46 | Plus |
Trx-2-PA | 106 | CG31884-PA | 5..102 | 4..101 | 224 | 40.8 | Plus |