Clone BS05627 Report

Search the DGRC for BS05627

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:27
Vector:pDNR-Dual
Associated Gene/Transcriptdhd-RA
Protein status:BS05627.pep: full length peptide match
Sequenced Size:356

Clone Sequence Records

BS05627.3prime Sequence

354 bp (353 high quality bases) assembled on 2005-12-02

> BS05627.3prime
ATGGTCTAGAAAGCTTTTACGCCTTCACCAGCTTTGCCATCATGTTGGTC
AGCTTGTGCTCGTCGGCGCCGGCAAAGGAGGCCAAGCGTCGATTTTGGCG
CAAAAAGACAAACGTTGGCATGCTGCGCACCTTGTAGCGCTCCGTCAGCT
CCTCGAATTTGTCCACATCGATCTTGAGCACCACCGCCTTGCTGGAGTAT
TTTCTGGCCAGCGATTTGACGGTGCTCTCCATTTCCTTGCAGGGACCACA
CCATGTCGCATAGAAATCCAGCACGATTAGCTTGTCGTCGGCCGCCTCGA
TGCGCTTGTGATAGTCGTTCATGGTGCGTACGGATGCCATGTCGACTGAT
AACT

BS05627.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4193-PA 324 dhd-RA 1..324 340..17 1595 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
dhd-RB 952 CG4193-RB 290..613 340..17 1605 99.7 Minus
dhd-RA 772 CG4193-RA 107..430 340..17 1605 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5312460..5312783 340..17 1605 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 13:48:27 has no hits.

BS05627.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:04 Download gff for BS05627.3prime
Subject Subject Range Query Range Percent Splice Strand
dhd-PA 1..324 17..340 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:43 Download gff for BS05627.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4193-PA 1..324 17..340 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:37:03 Download gff for BS05627.3prime
Subject Subject Range Query Range Percent Splice Strand
dhd-RA 100..439 9..348 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:11:16 Download gff for BS05627.3prime
Subject Subject Range Query Range Percent Splice Strand
dhd-RA 100..439 9..348 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:11:16 Download gff for BS05627.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5312453..5312792 9..348 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:37:03 Download gff for BS05627.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5206486..5206825 9..348 97   Minus

BS05627.5prime Sequence

354 bp (353 high quality bases) assembled on 2005-12-02

> BS05627.5prime
GAAGTTATCAGTCGACATGGCATCCGTACGCACCATGAACGACTATCACA
AGCGCATCGAGGCGGCCGACGACAAGCTAATCGTGCTGGATTTCTATGCG
ACATGGTGTGGTCCCTGCAAGGAAATGGAGAGCACCGTCAAATCGCTGGC
CAGAAAATACTCCAGCAAGGCGGTGGTGCTCAAGATCGATGTGGACAAAT
TCGAGGAGCTGACGGAGCGCTACAAGGTGCGCAGCATGCCAACGTTTGTC
TTTTTGCGCCAAAATCGACGCTTGGCCTCCTTTGCCGGCGCCGACGAGCA
CAAGCTGACCAACATGATGGCAAAGCTGGTGAAGGCGTAAAAGCTTTCTA
GACC

BS05627.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4193-PA 324 dhd-RA 1..324 17..340 1595 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
dhd-RB 952 CG4193-RB 290..613 17..340 1605 99.7 Plus
dhd-RA 772 CG4193-RA 107..430 17..340 1605 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5312460..5312783 17..340 1605 99.7 Plus
Blast to na_te.dros performed on 2015-02-12 04:59:15 has no hits.

BS05627.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:05 Download gff for BS05627.5prime
Subject Subject Range Query Range Percent Splice Strand
dhd-PA 1..324 17..340 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:44 Download gff for BS05627.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4193-PA 1..324 17..340 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:13:20 Download gff for BS05627.5prime
Subject Subject Range Query Range Percent Splice Strand
dhd-RA 100..439 9..348 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:52 Download gff for BS05627.5prime
Subject Subject Range Query Range Percent Splice Strand
dhd-RA 100..439 9..348 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:52 Download gff for BS05627.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5312453..5312792 9..348 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:13:20 Download gff for BS05627.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5206486..5206825 9..348 97   Plus

BS05627.complete Sequence

356 bp assembled on 2009-02-12

GenBank Submission: KX800127

> BS05627.complete
GAAGTTATCAGTCGACATGGCATCCGTACGCACCATGAACGACTATCACA
AGCGCATCGAGGCGGCCGACGACAAGCTAATCGTGCTGGATTTCTATGCG
ACATGGTGTGGTCCCTGCAAGGAAATGGAGAGCACCGTCAAATCGCTGGC
CAGAAAATACTCCAGCAAGGCGGTGGTGCTCAAGATCGATGTGGACAAAT
TCGAGGAGCTGACGGAGCGCTACAAGGTGCGCAGCATGCCAACGTTTGTC
TTTTTGCGCCAAAATCGACGCTTGGCCTCCTTTGCCGGCGCCGACGAGCA
CAAGCTGACCAACATGATGGCAAAGCTGGTGAAGGCGTAAAAGCTTTCTA
GACCAT

BS05627.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
dhd-RB 324 CG4193-PB 1..324 17..340 1605 99.7 Plus
dhd-RA 324 CG4193-PA 1..324 17..340 1605 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
dhd-RB 952 CG4193-RB 290..613 17..340 1605 99.7 Plus
dhd-RA 772 CG4193-RA 107..430 17..340 1605 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5312460..5312783 17..340 1605 99.7 Plus
Blast to na_te.dros performed on 2014-11-27 14:52:59 has no hits.

BS05627.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:21 Download gff for BS05627.complete
Subject Subject Range Query Range Percent Splice Strand
dhd-RA 88..409 17..338 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:24 Download gff for BS05627.complete
Subject Subject Range Query Range Percent Splice Strand
dhd-RA 107..428 17..338 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:50 Download gff for BS05627.complete
Subject Subject Range Query Range Percent Splice Strand
dhd-RA 107..428 17..338 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:50 Download gff for BS05627.complete
Subject Subject Range Query Range Percent Splice Strand
X 5312460..5312781 17..338 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:24 Download gff for BS05627.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5206493..5206814 17..338 99   Plus

BS05627.pep Sequence

Translation from 16 to 339

> BS05627.pep
MASVRTMNDYHKRIEAADDKLIVLDFYATWCGPCKEMESTVKSLARKYSS
KAVVLKIDVDKFEELTERYKVRSMPTFVFLRQNRRLASFAGADEHKLTNM
MAKLVKA*

BS05627.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
dhd-PB 107 CG4193-PB 1..107 1..107 545 100 Plus
dhd-PA 107 CG4193-PA 1..107 1..107 545 100 Plus
TrxT-PB 157 CG3315-PB 5..104 4..103 251 46 Plus
TrxT-PA 157 CG3315-PA 5..104 4..103 251 46 Plus
Trx-2-PA 106 CG31884-PA 5..102 4..101 224 40.8 Plus