Clone Sequence Records
BS05629.3prime Sequence
744 bp (743 high quality bases) assembled on 2005-12-02
> BS05629.3prime
ATGGTCTAGAAAGCTTCTATTTCTTGCGTTCGTAGCGGAATTTGTAGACG
GGCGCACTGTCCTTGGTTCCCGGCTTTATTTTCCTCGGCTTCAGTAGGCG
TGGCTGCTTGAGGGTGTTCTTCAGCTGAATCTTCTGCTGGACGATGCCGA
GTTCCCTTTCACGCTGCTCGCGTTTCTTCAGCTCGTTGATGCGCTGCTGT
TTGATGGGGTTTGGTTCAGTTGTTTTCGATTTCTTCTTCTTTTCCTCCTC
TTCCTCCTCGTCATCATGCTTTAAAAGCCATTCGCCCATGTCCAACTCCA
TGTATCCGTCTTCGTCAAATTTGATACGTTTGTTGGCTGCTCCCTTAATG
GCATCCACGTCCACCAGCGAGGCCTTCAAGCGTTCGATCTTCTTGCGCTC
CATGGTGCGCTTCATCACCACGTACTTGAGGTCCTGCGTCTGCATGAGGG
CCAATTGCTCGGGCGTGTGCTCGTCCTTCGTGTCCTTCTCGTGGTGCTCA
TCGTTGGACAGCTTGGAGTTGATCATATGGTGGTAGAACTCATCGGGATT
CTTGTTCTGCGCCCGGCGGTACAATAGCTTCAAGGTCTTTTGCTTTTTCT
GTGCGTCGATGGCTCGCTTCTTGTAGTCCTTTTTCTTCTCCAGGAATCCC
AGATGCTGGCGCGACTCCGGCTGGTGGCGCTCCCTGTGCACCTTCTGGTT
GCTTTTCGACGCATTCTTCCACGATGACATGTCGACTGATAACT
BS05629.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1789-PA | 714 | CG1789-RA | 1..714 | 730..17 | 3570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1789-RA | 860 | CG1789-RA | 87..802 | 730..15 | 3580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8720606..8721109 | 730..227 | 2520 | 100 | Minus |
X | 23542271 | X | 8721233..8721445 | 227..15 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:31:24 has no hits.
BS05629.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:07 Download gff for
BS05629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-PA | 1..714 | 17..730 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:49 Download gff for
BS05629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-PA | 1..714 | 17..730 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:35 Download gff for
BS05629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 87..808 | 9..730 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:37 Download gff for
BS05629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 87..808 | 9..730 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:37 Download gff for
BS05629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8720606..8721109 | 227..730 | 100 | -> | Minus |
X | 8721234..8721451 | 9..226 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:35 Download gff for
BS05629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8614639..8615142 | 227..730 | 100 | -> | Minus |
arm_X | 8615267..8615484 | 9..226 | 99 | | Minus |
BS05629.5prime Sequence
744 bp (721 high quality bases) assembled on 2005-12-02
> BS05629.5prime
GAAGTTATCAGTCGACATGTCATCGTGGAAGAATGCGTCGAAAAGCAACC
AGAAGGTGCACAGGGAGCGCCACCAGCCGGAGTCGCGCCAGCATCTGGGA
TTCCTGGAGAAGAAAAAGGACTACAAGAAGCGAGCCATCGACGCACAGAA
AAAGCAAAAGACCTTGAAGCTATTGTACCGCCGGGCGCAGAACAAGAATC
CCGATGAGTTCTACCACCATATGATCAACTCCAAGCTGTCCAACGATGAG
CACCACGAGAAGGACACGAAGGACGAGCACACGCCCGAGCAATTGGCCCT
CATGCAGACGCAGGACCTCAAGTACGTGGTGATGAAGCGCACCATGGAGC
GCAAGAAGATCGAACGCTTGAAGGCCTCGCTGGTGGACGTGGATGCCATT
AAGGGAGCAGCCAACAAACGTATCAAATTTGACGAAGACGGATACATGGA
GTTGGACATGGGCGAATGGCTTTTAAAGCATGATGACGAGGAGGAAGAGG
AGGAAAAGAAGAAGAAATCGAAAACAACTGAACCAAACCCCATCAAACAG
CAGCGCATCAACGAGCTGAAGAAACGCGAGCAGCGTGAAAGGGAACTCGG
CATCGTCCAGCAGAAGATTCAGCTGAAGAACACCCTCAAGCAGCCACGCC
TACTGAAGCCGAGGAAAATAAAGCCGGGAACCAAGGACAGTGCGCCCGTC
TACAAATTCCGCTACGAACGCAAGAAATAGAAGCTTTCTAGACC
BS05629.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1789-PA | 714 | CG1789-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1789-RA | 860 | CG1789-RA | 87..802 | 17..732 | 3580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8720606..8721109 | 17..520 | 2520 | 100 | Plus |
X | 23542271 | X | 8721233..8721445 | 520..732 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:38:08 has no hits.
BS05629.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:08 Download gff for
BS05629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-PA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:51 Download gff for
BS05629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-PA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:34 Download gff for
BS05629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 87..808 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:56:49 Download gff for
BS05629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 87..808 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:56:49 Download gff for
BS05629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8720606..8721109 | 17..520 | 100 | -> | Plus |
X | 8721234..8721451 | 521..738 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:34 Download gff for
BS05629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8614639..8615142 | 17..520 | 100 | -> | Plus |
arm_X | 8615267..8615484 | 521..738 | 99 | | Plus |
BS05629.complete Sequence
746 bp (746 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635175
> BS05629.complete
GAAGTTATCAGTCGACATGTCATCGTGGAAGAATGCGTCGAAAAGCAACC
AGAAGGTGCACAGGGAGCGCCACCAGCCGGAGTCGCGCCAGCATCTGGGA
TTCCTGGAGAAGAAAAAGGACTACAAGAAGCGAGCCATCGACGCACAGAA
AAAGCAAAAGACCTTGAAGCTATTGTACCGCCGGGCGCAGAACAAGAATC
CCGATGAGTTCTACCACCATATGATCAACTCCAAGCTGTCCAACGATGAG
CACCACGAGAAGGACACGAAGGACGAGCACACGCCCGAGCAATTGGCCCT
CATGCAGACGCAGGACCTCAAGTACGTGGTGATGAAGCGCACCATGGAGC
GCAAGAAGATCGAACGCTTGAAGGCCTCGCTGGTGGACGTGGATGCCATT
AAGGGAGCAGCCAACAAACGTATCAAATTTGACGAAGACGGATACATGGA
GTTGGACATGGGCGAATGGCTTTTAAAGCATGATGACGAGGAGGAAGAGG
AGGAAAAGAAGAAGAAATCGAAAACAACTGAACCAAACCCCATCAAACAG
CAGCGCATCAACGAGCTGAAGAAACGCGAGCAGCGTGAAAGGGAACTCGG
CATCGTCCAGCAGAAGATTCAGCTGAAGAACACCCTCAAGCAGCCACGCC
TACTGAAGCCGAGGAAAATAAAGCCGGGAACCAAGGACAGTGCGCCCGTC
TACAAATTCCGCTACGAACGCAAGAAATAGAAGCTTTCTAGACCAT
BS05629.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1789-RA | 714 | CG1789-PA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1789-RA | 860 | CG1789-RA | 87..802 | 17..732 | 3580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8720606..8721109 | 17..520 | 2520 | 100 | Plus |
X | 23542271 | X | 8721233..8721445 | 520..732 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:02:51 has no hits.
BS05629.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:06 Download gff for
BS05629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:07 Download gff for
BS05629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 50..771 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:44 Download gff for
BS05629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 87..794 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:06 Download gff for
BS05629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 50..771 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:15 Download gff for
BS05629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 87..794 | 17..724 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:15 Download gff for
BS05629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8720606..8721109 | 17..520 | 100 | -> | Plus |
X | 8721234..8721437 | 521..724 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:44 Download gff for
BS05629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8614639..8615142 | 17..520 | 100 | -> | Plus |
arm_X | 8615267..8615470 | 521..724 | 100 | | Plus |
BS05629.pep Sequence
Translation from 16 to 729
> BS05629.pep
MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTL
KLLYRRAQNKNPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQD
LKYVVMKRTMERKKIERLKASLVDVDAIKGAANKRIKFDEDGYMELDMGE
WLLKHDDEEEEEEKKKKSKTTEPNPIKQQRINELKKREQRERELGIVQQK
IQLKNTLKQPRLLKPRKIKPGTKDSAPVYKFRYERKK*
BS05629.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1789-PA | 237 | CG1789-PA | 1..237 | 1..237 | 1234 | 100 | Plus |