Clone BS05629 Report

Search the DGRC for BS05629

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG1789-RA
Protein status:BS05629.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05629.3prime Sequence

744 bp (743 high quality bases) assembled on 2005-12-02

> BS05629.3prime
ATGGTCTAGAAAGCTTCTATTTCTTGCGTTCGTAGCGGAATTTGTAGACG
GGCGCACTGTCCTTGGTTCCCGGCTTTATTTTCCTCGGCTTCAGTAGGCG
TGGCTGCTTGAGGGTGTTCTTCAGCTGAATCTTCTGCTGGACGATGCCGA
GTTCCCTTTCACGCTGCTCGCGTTTCTTCAGCTCGTTGATGCGCTGCTGT
TTGATGGGGTTTGGTTCAGTTGTTTTCGATTTCTTCTTCTTTTCCTCCTC
TTCCTCCTCGTCATCATGCTTTAAAAGCCATTCGCCCATGTCCAACTCCA
TGTATCCGTCTTCGTCAAATTTGATACGTTTGTTGGCTGCTCCCTTAATG
GCATCCACGTCCACCAGCGAGGCCTTCAAGCGTTCGATCTTCTTGCGCTC
CATGGTGCGCTTCATCACCACGTACTTGAGGTCCTGCGTCTGCATGAGGG
CCAATTGCTCGGGCGTGTGCTCGTCCTTCGTGTCCTTCTCGTGGTGCTCA
TCGTTGGACAGCTTGGAGTTGATCATATGGTGGTAGAACTCATCGGGATT
CTTGTTCTGCGCCCGGCGGTACAATAGCTTCAAGGTCTTTTGCTTTTTCT
GTGCGTCGATGGCTCGCTTCTTGTAGTCCTTTTTCTTCTCCAGGAATCCC
AGATGCTGGCGCGACTCCGGCTGGTGGCGCTCCCTGTGCACCTTCTGGTT
GCTTTTCGACGCATTCTTCCACGATGACATGTCGACTGATAACT

BS05629.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-PA 714 CG1789-RA 1..714 730..17 3570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-RA 860 CG1789-RA 87..802 730..15 3580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8720606..8721109 730..227 2520 100 Minus
X 23542271 X 8721233..8721445 227..15 1065 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:31:24 has no hits.

BS05629.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:07 Download gff for BS05629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-PA 1..714 17..730 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:49 Download gff for BS05629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-PA 1..714 17..730 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:35 Download gff for BS05629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 87..808 9..730 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:37 Download gff for BS05629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 87..808 9..730 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:37 Download gff for BS05629.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8720606..8721109 227..730 100 -> Minus
X 8721234..8721451 9..226 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:35 Download gff for BS05629.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8614639..8615142 227..730 100 -> Minus
arm_X 8615267..8615484 9..226 99   Minus

BS05629.5prime Sequence

744 bp (721 high quality bases) assembled on 2005-12-02

> BS05629.5prime
GAAGTTATCAGTCGACATGTCATCGTGGAAGAATGCGTCGAAAAGCAACC
AGAAGGTGCACAGGGAGCGCCACCAGCCGGAGTCGCGCCAGCATCTGGGA
TTCCTGGAGAAGAAAAAGGACTACAAGAAGCGAGCCATCGACGCACAGAA
AAAGCAAAAGACCTTGAAGCTATTGTACCGCCGGGCGCAGAACAAGAATC
CCGATGAGTTCTACCACCATATGATCAACTCCAAGCTGTCCAACGATGAG
CACCACGAGAAGGACACGAAGGACGAGCACACGCCCGAGCAATTGGCCCT
CATGCAGACGCAGGACCTCAAGTACGTGGTGATGAAGCGCACCATGGAGC
GCAAGAAGATCGAACGCTTGAAGGCCTCGCTGGTGGACGTGGATGCCATT
AAGGGAGCAGCCAACAAACGTATCAAATTTGACGAAGACGGATACATGGA
GTTGGACATGGGCGAATGGCTTTTAAAGCATGATGACGAGGAGGAAGAGG
AGGAAAAGAAGAAGAAATCGAAAACAACTGAACCAAACCCCATCAAACAG
CAGCGCATCAACGAGCTGAAGAAACGCGAGCAGCGTGAAAGGGAACTCGG
CATCGTCCAGCAGAAGATTCAGCTGAAGAACACCCTCAAGCAGCCACGCC
TACTGAAGCCGAGGAAAATAAAGCCGGGAACCAAGGACAGTGCGCCCGTC
TACAAATTCCGCTACGAACGCAAGAAATAGAAGCTTTCTAGACC

BS05629.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-PA 714 CG1789-RA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-RA 860 CG1789-RA 87..802 17..732 3580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8720606..8721109 17..520 2520 100 Plus
X 23542271 X 8721233..8721445 520..732 1065 100 Plus
Blast to na_te.dros performed on 2015-02-09 23:38:08 has no hits.

BS05629.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:08 Download gff for BS05629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:51 Download gff for BS05629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:34 Download gff for BS05629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 87..808 17..738 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:56:49 Download gff for BS05629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 87..808 17..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:56:49 Download gff for BS05629.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8720606..8721109 17..520 100 -> Plus
X 8721234..8721451 521..738 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:34 Download gff for BS05629.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8614639..8615142 17..520 100 -> Plus
arm_X 8615267..8615484 521..738 99   Plus

BS05629.complete Sequence

746 bp (746 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635175

> BS05629.complete
GAAGTTATCAGTCGACATGTCATCGTGGAAGAATGCGTCGAAAAGCAACC
AGAAGGTGCACAGGGAGCGCCACCAGCCGGAGTCGCGCCAGCATCTGGGA
TTCCTGGAGAAGAAAAAGGACTACAAGAAGCGAGCCATCGACGCACAGAA
AAAGCAAAAGACCTTGAAGCTATTGTACCGCCGGGCGCAGAACAAGAATC
CCGATGAGTTCTACCACCATATGATCAACTCCAAGCTGTCCAACGATGAG
CACCACGAGAAGGACACGAAGGACGAGCACACGCCCGAGCAATTGGCCCT
CATGCAGACGCAGGACCTCAAGTACGTGGTGATGAAGCGCACCATGGAGC
GCAAGAAGATCGAACGCTTGAAGGCCTCGCTGGTGGACGTGGATGCCATT
AAGGGAGCAGCCAACAAACGTATCAAATTTGACGAAGACGGATACATGGA
GTTGGACATGGGCGAATGGCTTTTAAAGCATGATGACGAGGAGGAAGAGG
AGGAAAAGAAGAAGAAATCGAAAACAACTGAACCAAACCCCATCAAACAG
CAGCGCATCAACGAGCTGAAGAAACGCGAGCAGCGTGAAAGGGAACTCGG
CATCGTCCAGCAGAAGATTCAGCTGAAGAACACCCTCAAGCAGCCACGCC
TACTGAAGCCGAGGAAAATAAAGCCGGGAACCAAGGACAGTGCGCCCGTC
TACAAATTCCGCTACGAACGCAAGAAATAGAAGCTTTCTAGACCAT

BS05629.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-RA 714 CG1789-PA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-RA 860 CG1789-RA 87..802 17..732 3580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8720606..8721109 17..520 2520 100 Plus
X 23542271 X 8721233..8721445 520..732 1065 100 Plus
Blast to na_te.dros performed on 2014-11-27 17:02:51 has no hits.

BS05629.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:06 Download gff for BS05629.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:07 Download gff for BS05629.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 50..771 17..738 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:44 Download gff for BS05629.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 87..794 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:06 Download gff for BS05629.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 50..771 17..738 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:15 Download gff for BS05629.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 87..794 17..724 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:15 Download gff for BS05629.complete
Subject Subject Range Query Range Percent Splice Strand
X 8720606..8721109 17..520 100 -> Plus
X 8721234..8721437 521..724 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:44 Download gff for BS05629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8614639..8615142 17..520 100 -> Plus
arm_X 8615267..8615470 521..724 100   Plus

BS05629.pep Sequence

Translation from 16 to 729

> BS05629.pep
MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTL
KLLYRRAQNKNPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQD
LKYVVMKRTMERKKIERLKASLVDVDAIKGAANKRIKFDEDGYMELDMGE
WLLKHDDEEEEEEKKKKSKTTEPNPIKQQRINELKKREQRERELGIVQQK
IQLKNTLKQPRLLKPRKIKPGTKDSAPVYKFRYERKK*

BS05629.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-PA 237 CG1789-PA 1..237 1..237 1234 100 Plus