Clone Sequence Records
BS05630.3prime Sequence
867 bp (823 high quality bases) assembled on 2005-12-02
> BS05630.3prime
ATGGTCTAGAAAGCTTCTACGTTGATCCATTGGAAGATTCCTCCTGTGCC
TCGGATTTGTCCTCCTCCTTGCTGTCACCATCGGCATCTGTTCCATCATC
GCCAGGTTGGCTTGGATCTGGATTGCTGGAGCTACTGCCGTTGCTCTCGG
CCAAATCGTTCTGGTCGAAACCATTCGTGTATTCCGGCGTTGGAGCCGTG
TCATTGGCGCTGGGCGGCGGGGTAATCTTCCGCAGCTGCTGACGGGCGGC
ATGGACGATCTTTTCCAGCTCGACGCACTCCGTCTCGATCTCGTAGTTCT
TGGAGACCAGCAGCACCCAATGGGCTTCCAGGGAGCGCAGTCGCTCGCCG
GCCTGCGTTTGCGCCTGCTTGCGCTGCCAGTTGACATCTTGAATGTCCTT
CTTCAGCTGCTGCAGCTGGAGCTGCGCCTTCGCCTGCATGGCGGTGAAGA
CCTCCAGGTAGGACTTCCATGCCTCCGTGCCGTAGTCGAGCATTAGCTCC
AGGTTGAGAGAGCGCACCCACTGGTGCTCCAGCTGGGCCATCGAGTTCTC
AATGGCCTCCTGCCAGGCGGACACCTCCGACAATTTGCCCGATGGCGGCG
GTGGCAGTTCGTAGCGCTTCATGGAGAGCGTCTCCATGGGCAGGCGGTTC
TGGATGCGCTCGAACTCGTTGGCCATCAGCGGAGTCTCAAAGGGCGAGCT
GGCGGGCAGTGGCAGATGGTCAAGGTAATTTTTTGTGGGCCTATAGCGCC
GGCATTCCTCCTCCACCATGGCGAGAGCCGATTCCCGGACGCCCACATCG
TCATAGCCGTGATCTATGTAGGGCAGAGCATCCACAATAACTTCGCCAGC
CATGTCGACTGATAACT
BS05630.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4980-PA | 837 | CG4980-RA | 1..837 | 853..17 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BCAS2-RA | 1007 | CG4980-RA | 84..921 | 853..16 | 4190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27921369..27922132 | 16..779 | 3820 | 100 | Plus |
| 3R | 32079331 | 3R | 27922198..27922273 | 778..853 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:02:14 has no hits.
BS05630.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:09 Download gff for
BS05630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-PA | 1..837 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:52 Download gff for
BS05630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-PA | 1..837 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:21:23 Download gff for
BS05630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..924 | 10..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:50 Download gff for
BS05630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..924 | 10..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:50 Download gff for
BS05630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27921366..27922131 | 10..778 | 99 | <- | Plus |
| 3R | 27922199..27922273 | 779..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:21:23 Download gff for
BS05630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23747088..23747853 | 10..778 | 99 | <- | Plus |
| arm_3R | 23747921..23747995 | 779..853 | 100 | | Plus |
BS05630.5prime Sequence
867 bp (835 high quality bases) assembled on 2005-11-29
> BS05630.5prime
GAAGTTATCAGTCGACATGGCTGGCGAAGTTATTGTGGATGCTCTGCCCT
ACATAGATCACGGCTATGACGATGTGGGCGTCCGGGAATCGGCTCTCGCC
ATGGTGGAGGAGGAATGCCGGCGCTATAGGCCCACAAAAAATTACCTTGA
CCATCTGCCACTGCCCGCCAGCTCGCCCTTTGAGACTCCGCTGATGGCCA
ACGAGTTCGAGCGCATCCAGAACCGCCTGCCCATGGAGACGCTCTCCATG
AAGCGCTACGAACTGCCACCGCCGCCATCGGGCAAATTGTCGGAGGTGTC
CGCCTGGCAGGAGGCCATTGAGAACTCGATGGCCCAGCTGGAGCACCAGT
GGGTGCGCTCTCTCAACCTGGAGCTAATGCTCGACTACGGCACGGAGGCA
TGGAAGTCCTACCTGGAGGTCTTCACCGCCATGCAGGCGAAGGCGCAGCT
CCAGCTGCAGCAGCTGAAGAAGGACATTCAAGATGTCAACTGGCAGCGCA
AGCAGGCGCAAACGCAGGCCGGCGAGCGACTGCGCTCCCTGGAAGCCCAT
TGGGTGCTGCTGGTCTCCAAGAACTACGAGATCGAGACGGAGTGCGTCGA
GCTGGAAAAGATCGTCCATGCCGCCCGTCAGCAGCTGCGGAAGATTACCC
CGCCGCCCAGCGCCAATGACACGGCTCCAACGCCGGAATACACGAATGGT
TTCGACCAGAACGATTTGGCCGAGAGCAACGGCAGTAGCTCCAGCAATCC
AGATCCAAGCCAACCTGGCGATGATGGAACAGATGCCGATGGTGACAGCA
AGGAGGAGGACAAATCCGAGGCACAGGAGGAATCTTCCNATGGATCAACG
TAGAAGCTTTCTAGACC
BS05630.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4980-PA | 837 | CG4980-RA | 1..837 | 17..853 | 4166 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BCAS2-RA | 1007 | CG4980-RA | 84..921 | 17..854 | 4179 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27921369..27922132 | 854..91 | 3809 | 99.9 | Minus |
| 3R | 32079331 | 3R | 27922198..27922273 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:24:50 has no hits.
BS05630.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:11 Download gff for
BS05630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:53 Download gff for
BS05630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:36:23 Download gff for
BS05630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..924 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:10 Download gff for
BS05630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..924 | 17..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:10 Download gff for
BS05630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27921366..27922131 | 92..860 | 99 | <- | Minus |
| 3R | 27922199..27922273 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:36:23 Download gff for
BS05630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23747088..23747853 | 92..860 | 99 | <- | Minus |
| arm_3R | 23747921..23747995 | 17..91 | 100 | | Minus |
BS05630.complete Sequence
869 bp (869 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635176
> BS05630.complete
GAAGTTATCAGTCGACATGGCTGGCGAAGTTATTGTGGATGCTCTGCCCT
ACATAGATCACGGCTATGACGATGTGGGCGTCCGGGAATCGGCTCTCGCC
ATGGTGGAGGAGGAATGCCGGCGCTATAGGCCCACAAAAAATTACCTTGA
CCATCTGCCACTGCCCGCCAGCTCGCCCTTTGAGACTCCGCTGATGGCCA
ACGAGTTCGAGCGCATCCAGAACCGCCTGCCCATGGAGACGCTCTCCATG
AAGCGCTACGAACTGCCACCGCCGCCATCGGGCAAATTGTCGGAGGTGTC
CGCCTGGCAGGAGGCCATTGAGAACTCGATGGCCCAGCTGGAGCACCAGT
GGGTGCGCTCTCTCAACCTGGAGCTAATGCTCGACTACGGCACGGAGGCA
TGGAAGTCCTACCTGGAGGTCTTCACCGCCATGCAGGCGAAGGCGCAGCT
CCAGCTGCAGCAGCTGAAGAAGGACATTCAAGATGTCAACTGGCAGCGCA
AGCAGGCGCAAACGCAGGCCGGCGAGCGACTGCGCTCCCTGGAAGCCCAT
TGGGTGCTGCTGGTCTCCAAGAACTACGAGATCGAGACGGAGTGCGTCGA
GCTGGAAAAGATCGTCCATGCCGCCCGTCAGCAGCTGCGGAAGATTACCC
CGCCGCCCAGCGCCAATGACACGGCTCCAACGCCGGAATACACGAATGGT
TTCGACCAGAACGATTTGGCCGAGAGCAACGGCAGTAGCTCCAGCAATCC
AGATCCAAGCCAACCTGGCGATGATGGAACAGATGCCGATGGTGACAGCA
AGGAGGAGGACAAATCCGAGGCACAGGAGGAATCTTCCAATGGATCAACG
TAGAAGCTTTCTAGACCAT
BS05630.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BCAS2-RA | 837 | CG4980-PA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BCAS2-RA | 1007 | CG4980-RA | 84..921 | 17..854 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27921369..27922132 | 854..91 | 3820 | 100 | Minus |
| 3R | 32079331 | 3R | 27922198..27922273 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:57:19 has no hits.
BS05630.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:29 Download gff for
BS05630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-RA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:27 Download gff for
BS05630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-RA | 79..919 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:11 Download gff for
BS05630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..920 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:29 Download gff for
BS05630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-RA | 79..919 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:00 Download gff for
BS05630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..920 | 17..853 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:00 Download gff for
BS05630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27921370..27922131 | 92..853 | 100 | <- | Minus |
| 3R | 27922199..27922273 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:11 Download gff for
BS05630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23747092..23747853 | 92..853 | 100 | <- | Minus |
| arm_3R | 23747921..23747995 | 17..91 | 100 | | Minus |
BS05630.pep Sequence
Translation from 16 to 852
> BS05630.pep
MAGEVIVDALPYIDHGYDDVGVRESALAMVEEECRRYRPTKNYLDHLPLP
ASSPFETPLMANEFERIQNRLPMETLSMKRYELPPPPSGKLSEVSAWQEA
IENSMAQLEHQWVRSLNLELMLDYGTEAWKSYLEVFTAMQAKAQLQLQQL
KKDIQDVNWQRKQAQTQAGERLRSLEAHWVLLVSKNYEIETECVELEKIV
HAARQQLRKITPPPSANDTAPTPEYTNGFDQNDLAESNGSSSSNPDPSQP
GDDGTDADGDSKEEDKSEAQEESSNGST*
BS05630.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BCAS2-PA | 278 | CG4980-PA | 1..278 | 1..278 | 1452 | 100 | Plus |
