Clone Sequence Records
BS05631.3prime Sequence
907 bp (836 high quality bases) assembled on 2005-12-02
> BS05631.3prime
ATGGTCTAGAAAGCTTCTAGTTGTCCACTACGTTCATGTCCAGGAGAAGC
TTTTTGGTCTGCAGATCAATGAGCCGCCGCTTGGCCCTGGCCAACTCGGC
CATCTCGTTGTAGTATATCGTTTCCGCCTTGAGCTTCTCGTCCAGCTGTG
TGGTGGACTCCGCCAGCGAGGCGCTGTCCTGCGGAATCATGTTCTGCATC
TCCGCCGGCTCCGGCTCATCGCACCTGTCCACCACCACGGAGTCCGAGTT
GTCCACAACGTACTCGTAGAAGGGTTCCTGCAGCGAAATCGAAGTGACCT
CTTCTTCAAGGTGATCGGCCACCTTTTCGATGATGCTGTCCACATCGTCA
AAGTTGACTTTCTCCAGGGGATCAGCCGCCTGCCTACGCTCCAGGCTGGC
GTAGGAGTCCTTCTTGGGTGTCATGAGGTGCTGGTGCGAGTGATTCAGCG
TCTTGGCCAGGCTGGTGTGACGACGCACAATGTGTCGCATCAGATTGGAG
GACGAGTGCTTCGAGGAGAGCGTCTTGCCGCAGTGCATACATTTGGCCAT
GAATTCGGAGATGCGGATAAAGTGCGCCCACAGTTTATTGTTCTTCCCAA
TGACCTTGTTGCGCATCTCCTCCTGGCTGTGCCGCTCCATCTGCTCTTGT
TCGAGCTTCGCGTTCATGATGCCGCGCACCGCCGACTTGGTCTCGCCCTC
TCCGAGCTCCATGCTCAGGTCCTCGGAGGCGGAGGCTTCCAGCTCGTCCT
TCAGCTCCGCCAGCATCTTACCCTCCTCGCCGGCAAAAATTGATCGGGCC
AAGAGCTTGTGGTTCCGGATTAAGTGGCGCGTCAAGTTGGAGGATGTGTG
TTTGGGAGACAATGTCTTCTCGCAGTGTTTGCACTGAACTATGTACTCGG
TCAGTCG
BS05631.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15514-PA | 930 | CG15514-RA | 40..930 | 907..17 | 4405 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15514-RA | 1369 | CG15514-RA | 180..1070 | 907..17 | 4425 | 99.8 | Minus |
CG15514-RB | 1348 | CG15514-RB | 180..1049 | 907..17 | 4100 | 97.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29860705..29861315 | 297..907 | 3025 | 99.7 | Plus |
3R | 32079331 | 3R | 29860354..29860637 | 17..300 | 1420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:15:12 has no hits.
BS05631.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:12 Download gff for
BS05631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15514-PA | 40..930 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:55 Download gff for
BS05631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15514-PA | 40..930 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:39:40 Download gff for
BS05631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15514-RA | 180..1070 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:32 Download gff for
BS05631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15514-RA | 180..1070 | 17..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:32 Download gff for
BS05631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29860354..29860635 | 17..298 | 100 | <- | Plus |
3R | 29860707..29861315 | 299..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:39:40 Download gff for
BS05631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25686076..25686357 | 17..298 | 100 | <- | Plus |
arm_3R | 25686429..25687037 | 299..907 | 99 | | Plus |
BS05631.5prime Sequence
903 bp (821 high quality bases) assembled on 2005-12-02
> BS05631.5prime
GAAGTTATCAGTCGACATGGTTGGGAAAAACTTCAAGGCTCTAGCGCACT
TCCACCGACTGACCGAGTACATAGTTCAGTGCAAACACTGCGAGAAGACA
TTGTCCTCCAAACACACATCCTCCAACTTGACGCGCCACTTAATCCGGAA
CCACAAGCTCTTGGCCCGATCAATTTTTGCCGGCGAGGAGGGTAAGATGC
TGGCGGAGCTGAAGGACGAGCTGGAAGCCTCCGCCTCCGAGGACCTGAGC
ATGGAGCTCGGAGAGGGCGAGACCAAGTCGGCGGTGCGCGGCATCATGAA
CGCGAAGCTCGAACAAGAGCAGATGGAGCGGCACAGCCAGGAGGAGATGC
GCAACAAGGTCATTGGGAAGAACAATAAACTGTGGGCGCACTTTATCCGC
ATCTCCGAATTCATGGCCAAATGTATGCACTGCGGCAAGACGCTCTCCTC
GAAGCACTCGTCCTCCAATCTGATGCGACACATTGTGCGTCGTCACACCA
GCCTGGCCAAGACGCTGAATCACTCGCACCAGCACCTCATGACACCCAAG
AAGGACTCCTACGCCAGCCTGGAGCGTAGGCAGGCGGCTGATCCCCTGGA
GAAAGTCAACTTTGACGATGTGGACAGCATCATCGAAAAGGTGGCCGATC
ACCTTGAAGAAGAGGTCACTTCGATTTCGCTGCAGGAACCCTTCTACGAG
TACGTTGTGGACAACTCGGACTCCGTGGTGGTGGACAGGTGCGATGAGCC
GGAGCCGGCGGAGATGCAGAACATGATTCCGCANGACAGCGCCTCGCTGG
CGGAGTCCACCACACAGCTGGACGAGAAGCTCAAGGCGGAAACGATATAC
TACAACGAGATGGCCGAGTTGGCCAGGGCCCAGCGGCGGCTCATTGATCT
GCA
BS05631.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15514-PA | 930 | CG15514-RA | 1..887 | 17..903 | 4391 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15514-RA | 1369 | CG15514-RA | 141..1027 | 17..903 | 4409 | 99.8 | Plus |
CG15514-RB | 1348 | CG15514-RB | 141..1006 | 17..903 | 4084 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29860705..29861354 | 666..17 | 3250 | 100 | Minus |
3R | 32079331 | 3R | 29860397..29860637 | 903..663 | 1179 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:34:04 has no hits.
BS05631.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:13 Download gff for
BS05631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15514-PA | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:56 Download gff for
BS05631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15514-PA | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:34:48 Download gff for
BS05631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15514-RA | 136..1026 | 9..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:57 Download gff for
BS05631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15514-RA | 136..1026 | 9..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:57 Download gff for
BS05631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29860398..29860635 | 665..902 | 99 | <- | Minus |
3R | 29860707..29861359 | 11..664 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:34:48 Download gff for
BS05631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25686120..25686357 | 665..902 | 99 | <- | Minus |
arm_3R | 25686429..25687081 | 11..664 | 99 | <- | Minus |
BS05631.complete Sequence
962 bp (962 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635177
> BS05631.complete
GAAGTTATCAGTCGACATGGTTGGGAAAAACTTCAAGGCTCTAGCGCACT
TCCACCGACTGACCGAGTACATAGTTCAGTGCAAACACTGCGAGAAGACA
TTGTCCTCCAAACACACATCCTCCAACTTGACGCGCCACTTAATCCGGAA
CCACAAGCTCTTGGCCCGATCAATTTTTGCCGGCGAGGAGGGTAAGATGC
TGGCGGAGCTGAAGGACGAGCTGGAAGCCTCCGCCTCCGAGGACCTGAGC
ATGGAGCTCGGAGAGGGCGAGACCAAGTCGGCGGTGCGCGGCATCATGAA
CGCGAAGCTCGAACAAGAGCAGATGGAGCGGCACAGCCAGGAGGAGATGC
GCAACAAGGTCATTGGGAAGAACAATAAACTGTGGGCGCACTTTATCCGC
ATCTCCGAATTCATGGCCAAATGTATGCACTGCGGCAAGACGCTCTCCTC
GAAGCACTCGTCCTCCAATCTGATGCGACACATTGTGCGTCGTCACACCA
GCCTGGCCAAGACGCTGAATCACTCGCACCAGCACCTCATGACACCCAAG
AAGGACTCCTACGCCAGCCTGGAGCGTAGGCAGGCGGCTGATCCCCTGGA
GAAAGTCAACTTTGACGATGTGGACAGCATCATCGAAAAGGTGGCCGATC
ACCTTGAAGAAGAGGTCACTTCGATTTCGCTGCAGGAACCCTTCTACGAG
TACGTTGTGGACAACTCGGACTCCGTGGTGGTGGACAGGTGCGATGAGCC
GGAGCCGGCGGAGATGCAGAACATGATTCCGCAGGACAGCGCCTCGCTGG
CGGAGTCCACCACACAGCTGGACGAGAAGCTCAAGGCGGAAACGATATAC
TACAACGAGATGGCCGAGTTGGCCAGGGCCAAGCGGCGGCTCATTGATCT
GCAGACCAAAAAGCTTCTCCTGGACATGAACGTAGTGGACAACTAGAAGC
TTTCTAGACCAT
BS05631.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15514-RA | 930 | CG15514-PA | 1..930 | 17..946 | 4650 | 100 | Plus |
CG15514-RB | 909 | CG15514-PB | 1..909 | 17..946 | 4300 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15514-RA | 1369 | CG15514-RA | 141..1070 | 17..946 | 4650 | 100 | Plus |
CG15514-RB | 1348 | CG15514-RB | 141..1049 | 17..946 | 4300 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29860705..29861354 | 666..17 | 3250 | 100 | Minus |
3R | 32079331 | 3R | 29860354..29860637 | 946..663 | 1420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:12:42 has no hits.
BS05631.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:14 Download gff for
BS05631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15514-RA | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:04 Download gff for
BS05631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15514-RA | 117..1051 | 9..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:08 Download gff for
BS05631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15514-RA | 141..1070 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:14 Download gff for
BS05631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15514-RA | 117..1051 | 9..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:54 Download gff for
BS05631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15514-RA | 141..1070 | 17..946 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:54 Download gff for
BS05631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29860354..29860635 | 665..946 | 100 | <- | Minus |
3R | 29860707..29861354 | 17..664 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:08 Download gff for
BS05631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25686076..25686357 | 665..946 | 100 | <- | Minus |
arm_3R | 25686429..25687076 | 17..664 | 100 | | Minus |
BS05631.pep Sequence
Translation from 16 to 945
> BS05631.pep
MVGKNFKALAHFHRLTEYIVQCKHCEKTLSSKHTSSNLTRHLIRNHKLLA
RSIFAGEEGKMLAELKDELEASASEDLSMELGEGETKSAVRGIMNAKLEQ
EQMERHSQEEMRNKVIGKNNKLWAHFIRISEFMAKCMHCGKTLSSKHSSS
NLMRHIVRRHTSLAKTLNHSHQHLMTPKKDSYASLERRQAADPLEKVNFD
DVDSIIEKVADHLEEEVTSISLQEPFYEYVVDNSDSVVVDRCDEPEPAEM
QNMIPQDSASLAESTTQLDEKLKAETIYYNEMAELARAKRRLIDLQTKKL
LLDMNVVDN*
BS05631.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15514-PA | 309 | CG15514-PA | 1..309 | 1..309 | 1577 | 100 | Plus |
CG15514-PB | 302 | CG15514-PB | 1..302 | 1..309 | 1529 | 97.7 | Plus |