Clone Sequence Records
BS05634.3prime Sequence
852 bp (812 high quality bases) assembled on 2005-12-02
> BS05634.3prime
ATGGTCTAGAAAGCTTTCATTTACTGTGGCTCTCTAGGTAAACTGTTGCA
TTGTCCACGCCCATAAACTGGTGTATACTCAGCGAGGACAGCATTTTCAT
CTGGCCCTGGTACAGCACATCGGCGATGATCTTTTCCGCGTAGATAGCCT
GTGTTCCGTCCATGGAGCGAAGCTTGTGTGCGATAATTTTCCCGAAGTTG
GAGAAGTGGTCGTCCAGCTGGCTGTCCGCACTCTTTAGGGCCAGCGAAAA
GAGGCGCTCAAAGTCAATGGTGGAAATGTCCGCTCGGAATTTACCTGGAG
GCGGCTCGTTGTCCTCCGAAATCTGCGAAGAGACCGAGGAGGACCTTTTC
CGTGTTATGTGATTGGCTTTCTGGCTCGGGCTCTGATTACTGATCAGTTT
CGTTTGGTTCTGGGTGACGATGCGCTTGCACTGCGGCGATTCGGAGTCGC
CAGGCGGAGACTTTATGGAGTCGGGCACGGATTTTCTGCGGGCGGACAGC
AGCCTGTTGTTAGCAGGCACCACGATTTCGACCTCCTTGATAGTAGCGCC
ACTGGCATGGCTGTTGGCGTTGTTGACTGTTTTAATACTGATAACGGGGT
CAGCGGCAGCGGCGGCGGCGGCCTCCTCGAAGATGTTGGCACAGAATTCG
TTGGCGCTGTTGTTGGGTGACATCTTGATCGAGTCTGCCGTCGGCTTTGG
GGGCTTGTGCAGGCTCTCGGCGTCGGAATACTCGTCGCCGTTCTCTGGCG
CCCCTAGCTGCATGGAGTTGTCCAGGCAGACCGACTGCTCGCGCTTGAAC
TTCTTGTCGGCGGGGATCTCCTCGTCCTTAAGGAACATCAGGAACTCGAA
GT
BS05634.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3163-PA | 1107 | CG3163-RA | 272..1107 | 852..17 | 4155 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3163-RA | 1239 | CG3163-RA | 333..1168 | 852..17 | 4165 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24029649..24030484 | 852..17 | 4165 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:02:23 has no hits.
BS05634.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:17 Download gff for
BS05634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3163-PA | 272..1107 | 17..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:03 Download gff for
BS05634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3163-PA | 272..1107 | 17..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:21:25 Download gff for
BS05634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3163-RA | 333..1172 | 13..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:14 Download gff for
BS05634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3163-RA | 333..1172 | 13..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:14 Download gff for
BS05634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24029649..24030488 | 13..852 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:21:25 Download gff for
BS05634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19917172..19918011 | 13..852 | 99 | | Minus |
BS05634.5prime Sequence
801 bp (754 high quality bases) assembled on 2005-12-02
> BS05634.5prime
GAAGTTATCAGTCGACATGGACTTTATCGACGACTTCATCGAAGAATACA
AAAGCAATCCGTGCTTGTGGAAGGCGGACTCGGCGGACTTCAGGAACCGC
AGCCGCCGGCAGGAGGCCTACGCGAAGCTCATCGAGGTGGCCACCAAGCA
CGGGGAGATGTACAATGTGGAGCGAACAAAGCAAAAGATAAACAATCTGC
GCTGTGCATTTCGTCATCAGCTGAGGAAATACAACGAGGTCAAGAAAAAG
GGCGAGAAGTACGAGCCCTACTGCCCCAAGCGCCGCTACTTCGAGTCCCT
GATGTTCCTTAAGGACGAGGAGATCCCCGCCGACAAGAAGTTCAAGCGCG
AGCAGTCGGTCTGCCTGGACAACTCCATGCAGCTAGGGGCGCCAGAGAAC
GGCGACGAGTATTCCGACGCCGAGAGCCTGCACAAGCCCCCAAAGCCGAC
GGCAGACTCGATCAAGATGTCACCCAACAACAGCGCCAACGAATTCTGTG
CCAACATCTTCGAGGAGGCCGCCGCCGCCGCTGCCGCTGACCCCGTTATC
AGTATTAAAACAGTCAACAACGCCAACAGCCATGCCAGTGGCGCTACTAT
CAAGGAGGTCGAAATCGTGGTGCCTGCTAACAACAGGCTGCTGTCCGCCC
GCAGAAAATCCGTGCCCGACTCCATAAAGTCTCCGCCTGGCGACTCCGAA
TCGCCGCAGTGCAAGCGCATCGTCACCCAGAACCAAACGAAACTGATCAG
TAATCAGAGCCCGAGCCAGAAAGCCAATCACATAACACGGAAAAGGTCCT
C
BS05634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3163-PA | 1107 | CG3163-RA | 1..785 | 17..801 | 3925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3163-RA | 1239 | CG3163-RA | 62..846 | 17..801 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24029378..24030162 | 17..801 | 3925 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:09:48 has no hits.
BS05634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:18 Download gff for
BS05634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3163-PA | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:05 Download gff for
BS05634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3163-PA | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:56:00 Download gff for
BS05634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3163-RA | 62..846 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:07 Download gff for
BS05634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3163-RA | 62..846 | 17..801 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:07 Download gff for
BS05634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24029378..24030162 | 17..801 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:56:00 Download gff for
BS05634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19916901..19917685 | 17..801 | 100 | | Plus |
BS05634.complete Sequence
1139 bp (1139 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ638784
> BS05634.complete
GAAGTTATCAGTCGACATGGACTTTATCGACGACTTCATCGAAGAATACA
AAAGCAATCCGTGCTTGTGGAAGGCGGACTCGGCGGACTTCAGGAACCGC
AGCCGCCGGCAGGAGGCCTACGCGAAGCTCATCGAGGTGGCCACCAAGCA
CGGGGAGATGTACAATGTGGAGCGAACAAAGCAAAAGATAAACAATCTGC
GCTGTGCATTTCGTCATCAGCTGAGGAAATACAACGAGGTCAAGAAAAAG
GGCGAGAAGTACGAGCCCTACTGCCCCAAGCGCCGCTACTTCGAGTCCCT
GATGTTCCTTAAGGACGAGGAGATCCCCGCCGACAAGAAGTTCAAGCGCG
AGCAGTCGGTCTGCCTGGACAACTCCATGCAGCTAGGGGCGCCAGAGAAC
GGCGACGAGTATTCCGACGCCGAGAGCCTGCACAAGCCCCCAAAGCCGAC
GGCAGACTCGATCAAGATGTCACCCAACAACAGCGCCAACGAATTCTGTG
CCAACATCTTCGAGGAGGCCGCCGCCGCCGCTGCCGCTGACCCCGTTATC
AGTATTAAAACAGTCAACAACGCCAACAGCCATGCCAGTGGCGCTACTAT
CAAGGAGGTCGAAATCGTGGTGCCTGCTAACAACAGGCTGCTGTCCGCCC
GCAGAAAATCCGTGCCCGACTCCATAAAGTCTCCGCCTGGCGACTCCGAA
TCGCCGCAGTGCAAGCGCATCGTCACCCAGAACCAAACGAAACTGATCAG
TAATCAGAGCCCGAGCCAGAAAGCCAATCACATAACACGGAAAAGGTCCT
CCTCGGTCTCTTCGCAGATTTCGGAGGACAACGAGCCGCCTCCAGGTAAA
TTCCGAGCGGACATTTCCACCATTGACTTTGAGCGCCTCTTTTCGCTGGC
CCTAAAGAGTGCGGACAGCCAGCTGGACGACCACTTCTCCAACTTCGGGA
AAATTATCGCACACAAGCTTCGCTCCATGGACGGAACACAGGCTATCTAC
GCGGAAAAGATCATCGCCGATGTGCTGTACCAGGGCCAGATGAAAATGCT
GTCCTCGCTGAGTATACACCAGTTTATGGGCGTGGACAATGCAACAGTTT
ACCTAGAGAGCCACAGTAAATGAAAGCTTTCTAGACCAT
BS05634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3163-RA | 1107 | CG3163-PA | 1..1107 | 17..1123 | 5535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3163-RA | 1239 | CG3163-RA | 62..1168 | 17..1123 | 5535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24029378..24030484 | 17..1123 | 5535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:35:41 has no hits.
BS05634.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:16 Download gff for
BS05634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3163-RA | 1..1107 | 17..1123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:07 Download gff for
BS05634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3163-RA | 58..1168 | 17..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:46 Download gff for
BS05634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3163-RA | 62..1167 | 17..1122 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:16 Download gff for
BS05634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3163-RA | 58..1168 | 17..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:47 Download gff for
BS05634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3163-RA | 62..1167 | 17..1122 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:47 Download gff for
BS05634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24029378..24030483 | 17..1122 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:46 Download gff for
BS05634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19916901..19918006 | 17..1122 | 100 | | Plus |
BS05634.pep Sequence
Translation from 16 to 1122
> BS05634.pep
MDFIDDFIEEYKSNPCLWKADSADFRNRSRRQEAYAKLIEVATKHGEMYN
VERTKQKINNLRCAFRHQLRKYNEVKKKGEKYEPYCPKRRYFESLMFLKD
EEIPADKKFKREQSVCLDNSMQLGAPENGDEYSDAESLHKPPKPTADSIK
MSPNNSANEFCANIFEEAAAAAAADPVISIKTVNNANSHASGATIKEVEI
VVPANNRLLSARRKSVPDSIKSPPGDSESPQCKRIVTQNQTKLISNQSPS
QKANHITRKRSSSVSSQISEDNEPPPGKFRADISTIDFERLFSLALKSAD
SQLDDHFSNFGKIIAHKLRSMDGTQAIYAEKIIADVLYQGQMKMLSSLSI
HQFMGVDNATVYLESHSK*
BS05634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3163-PA | 368 | CG3163-PA | 1..368 | 1..368 | 1896 | 100 | Plus |
CG5180-PC | 355 | CG5180-PC | 12..350 | 3..351 | 215 | 22.9 | Plus |
CG5180-PB | 355 | CG5180-PB | 12..350 | 3..351 | 215 | 22.9 | Plus |
CG8281-PA | 348 | CG8281-PA | 22..198 | 3..159 | 152 | 25.6 | Plus |