Clone BS05634 Report

Search the DGRC for BS05634

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG3163-RA
Protein status:BS05634.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05634.3prime Sequence

852 bp (812 high quality bases) assembled on 2005-12-02

> BS05634.3prime
ATGGTCTAGAAAGCTTTCATTTACTGTGGCTCTCTAGGTAAACTGTTGCA
TTGTCCACGCCCATAAACTGGTGTATACTCAGCGAGGACAGCATTTTCAT
CTGGCCCTGGTACAGCACATCGGCGATGATCTTTTCCGCGTAGATAGCCT
GTGTTCCGTCCATGGAGCGAAGCTTGTGTGCGATAATTTTCCCGAAGTTG
GAGAAGTGGTCGTCCAGCTGGCTGTCCGCACTCTTTAGGGCCAGCGAAAA
GAGGCGCTCAAAGTCAATGGTGGAAATGTCCGCTCGGAATTTACCTGGAG
GCGGCTCGTTGTCCTCCGAAATCTGCGAAGAGACCGAGGAGGACCTTTTC
CGTGTTATGTGATTGGCTTTCTGGCTCGGGCTCTGATTACTGATCAGTTT
CGTTTGGTTCTGGGTGACGATGCGCTTGCACTGCGGCGATTCGGAGTCGC
CAGGCGGAGACTTTATGGAGTCGGGCACGGATTTTCTGCGGGCGGACAGC
AGCCTGTTGTTAGCAGGCACCACGATTTCGACCTCCTTGATAGTAGCGCC
ACTGGCATGGCTGTTGGCGTTGTTGACTGTTTTAATACTGATAACGGGGT
CAGCGGCAGCGGCGGCGGCGGCCTCCTCGAAGATGTTGGCACAGAATTCG
TTGGCGCTGTTGTTGGGTGACATCTTGATCGAGTCTGCCGTCGGCTTTGG
GGGCTTGTGCAGGCTCTCGGCGTCGGAATACTCGTCGCCGTTCTCTGGCG
CCCCTAGCTGCATGGAGTTGTCCAGGCAGACCGACTGCTCGCGCTTGAAC
TTCTTGTCGGCGGGGATCTCCTCGTCCTTAAGGAACATCAGGAACTCGAA
GT

BS05634.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3163-PA 1107 CG3163-RA 272..1107 852..17 4155 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3163-RA 1239 CG3163-RA 333..1168 852..17 4165 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24029649..24030484 852..17 4165 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 22:02:23 has no hits.

BS05634.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:17 Download gff for BS05634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3163-PA 272..1107 17..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:03 Download gff for BS05634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3163-PA 272..1107 17..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:21:25 Download gff for BS05634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3163-RA 333..1172 13..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:14 Download gff for BS05634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3163-RA 333..1172 13..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:14 Download gff for BS05634.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24029649..24030488 13..852 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:21:25 Download gff for BS05634.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19917172..19918011 13..852 99   Minus

BS05634.5prime Sequence

801 bp (754 high quality bases) assembled on 2005-12-02

> BS05634.5prime
GAAGTTATCAGTCGACATGGACTTTATCGACGACTTCATCGAAGAATACA
AAAGCAATCCGTGCTTGTGGAAGGCGGACTCGGCGGACTTCAGGAACCGC
AGCCGCCGGCAGGAGGCCTACGCGAAGCTCATCGAGGTGGCCACCAAGCA
CGGGGAGATGTACAATGTGGAGCGAACAAAGCAAAAGATAAACAATCTGC
GCTGTGCATTTCGTCATCAGCTGAGGAAATACAACGAGGTCAAGAAAAAG
GGCGAGAAGTACGAGCCCTACTGCCCCAAGCGCCGCTACTTCGAGTCCCT
GATGTTCCTTAAGGACGAGGAGATCCCCGCCGACAAGAAGTTCAAGCGCG
AGCAGTCGGTCTGCCTGGACAACTCCATGCAGCTAGGGGCGCCAGAGAAC
GGCGACGAGTATTCCGACGCCGAGAGCCTGCACAAGCCCCCAAAGCCGAC
GGCAGACTCGATCAAGATGTCACCCAACAACAGCGCCAACGAATTCTGTG
CCAACATCTTCGAGGAGGCCGCCGCCGCCGCTGCCGCTGACCCCGTTATC
AGTATTAAAACAGTCAACAACGCCAACAGCCATGCCAGTGGCGCTACTAT
CAAGGAGGTCGAAATCGTGGTGCCTGCTAACAACAGGCTGCTGTCCGCCC
GCAGAAAATCCGTGCCCGACTCCATAAAGTCTCCGCCTGGCGACTCCGAA
TCGCCGCAGTGCAAGCGCATCGTCACCCAGAACCAAACGAAACTGATCAG
TAATCAGAGCCCGAGCCAGAAAGCCAATCACATAACACGGAAAAGGTCCT
C

BS05634.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3163-PA 1107 CG3163-RA 1..785 17..801 3925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3163-RA 1239 CG3163-RA 62..846 17..801 3925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24029378..24030162 17..801 3925 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:09:48 has no hits.

BS05634.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:18 Download gff for BS05634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3163-PA 1..785 17..801 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:05 Download gff for BS05634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3163-PA 1..785 17..801 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:56:00 Download gff for BS05634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3163-RA 62..846 17..801 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:07 Download gff for BS05634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3163-RA 62..846 17..801 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:07 Download gff for BS05634.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24029378..24030162 17..801 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:56:00 Download gff for BS05634.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19916901..19917685 17..801 100   Plus

BS05634.complete Sequence

1139 bp (1139 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ638784

> BS05634.complete
GAAGTTATCAGTCGACATGGACTTTATCGACGACTTCATCGAAGAATACA
AAAGCAATCCGTGCTTGTGGAAGGCGGACTCGGCGGACTTCAGGAACCGC
AGCCGCCGGCAGGAGGCCTACGCGAAGCTCATCGAGGTGGCCACCAAGCA
CGGGGAGATGTACAATGTGGAGCGAACAAAGCAAAAGATAAACAATCTGC
GCTGTGCATTTCGTCATCAGCTGAGGAAATACAACGAGGTCAAGAAAAAG
GGCGAGAAGTACGAGCCCTACTGCCCCAAGCGCCGCTACTTCGAGTCCCT
GATGTTCCTTAAGGACGAGGAGATCCCCGCCGACAAGAAGTTCAAGCGCG
AGCAGTCGGTCTGCCTGGACAACTCCATGCAGCTAGGGGCGCCAGAGAAC
GGCGACGAGTATTCCGACGCCGAGAGCCTGCACAAGCCCCCAAAGCCGAC
GGCAGACTCGATCAAGATGTCACCCAACAACAGCGCCAACGAATTCTGTG
CCAACATCTTCGAGGAGGCCGCCGCCGCCGCTGCCGCTGACCCCGTTATC
AGTATTAAAACAGTCAACAACGCCAACAGCCATGCCAGTGGCGCTACTAT
CAAGGAGGTCGAAATCGTGGTGCCTGCTAACAACAGGCTGCTGTCCGCCC
GCAGAAAATCCGTGCCCGACTCCATAAAGTCTCCGCCTGGCGACTCCGAA
TCGCCGCAGTGCAAGCGCATCGTCACCCAGAACCAAACGAAACTGATCAG
TAATCAGAGCCCGAGCCAGAAAGCCAATCACATAACACGGAAAAGGTCCT
CCTCGGTCTCTTCGCAGATTTCGGAGGACAACGAGCCGCCTCCAGGTAAA
TTCCGAGCGGACATTTCCACCATTGACTTTGAGCGCCTCTTTTCGCTGGC
CCTAAAGAGTGCGGACAGCCAGCTGGACGACCACTTCTCCAACTTCGGGA
AAATTATCGCACACAAGCTTCGCTCCATGGACGGAACACAGGCTATCTAC
GCGGAAAAGATCATCGCCGATGTGCTGTACCAGGGCCAGATGAAAATGCT
GTCCTCGCTGAGTATACACCAGTTTATGGGCGTGGACAATGCAACAGTTT
ACCTAGAGAGCCACAGTAAATGAAAGCTTTCTAGACCAT

BS05634.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3163-RA 1107 CG3163-PA 1..1107 17..1123 5535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3163-RA 1239 CG3163-RA 62..1168 17..1123 5535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24029378..24030484 17..1123 5535 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:35:41 has no hits.

BS05634.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:16 Download gff for BS05634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3163-RA 1..1107 17..1123 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:07 Download gff for BS05634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3163-RA 58..1168 17..1127 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:46 Download gff for BS05634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3163-RA 62..1167 17..1122 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:16 Download gff for BS05634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3163-RA 58..1168 17..1127 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:47 Download gff for BS05634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3163-RA 62..1167 17..1122 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:47 Download gff for BS05634.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24029378..24030483 17..1122 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:46 Download gff for BS05634.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19916901..19918006 17..1122 100   Plus

BS05634.pep Sequence

Translation from 16 to 1122

> BS05634.pep
MDFIDDFIEEYKSNPCLWKADSADFRNRSRRQEAYAKLIEVATKHGEMYN
VERTKQKINNLRCAFRHQLRKYNEVKKKGEKYEPYCPKRRYFESLMFLKD
EEIPADKKFKREQSVCLDNSMQLGAPENGDEYSDAESLHKPPKPTADSIK
MSPNNSANEFCANIFEEAAAAAAADPVISIKTVNNANSHASGATIKEVEI
VVPANNRLLSARRKSVPDSIKSPPGDSESPQCKRIVTQNQTKLISNQSPS
QKANHITRKRSSSVSSQISEDNEPPPGKFRADISTIDFERLFSLALKSAD
SQLDDHFSNFGKIIAHKLRSMDGTQAIYAEKIIADVLYQGQMKMLSSLSI
HQFMGVDNATVYLESHSK*

BS05634.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3163-PA 368 CG3163-PA 1..368 1..368 1896 100 Plus
CG5180-PC 355 CG5180-PC 12..350 3..351 215 22.9 Plus
CG5180-PB 355 CG5180-PB 12..350 3..351 215 22.9 Plus
CG8281-PA 348 CG8281-PA 22..198 3..159 152 25.6 Plus