Clone BS05636 Report

Search the DGRC for BS05636

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:36
Vector:pDNR-Dual
Associated Gene/Transcriptben-RA
Protein status:BS05636.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05636.3prime Sequence

486 bp (485 high quality bases) assembled on 2005-12-02

> BS05636.3prime
ATGGTCTAGAAAGCTTTCAGTCTTCGACGGCATATTTCTGGGTCCACTCG
CGGGCATTGCGAATGGCCTCCGCCTCGTTGACCTTCCACAACTCAGCCAC
ATCGTTGGCCAGCGGATCGTCGGGATTGGGTGCACTGAGCAGTGCCTGAA
TGGATAGCAATATGGTCCGGATCTGCAGGGCTGGACTCCACTTGTCCTTC
AGCACGTCGAGGCAAATGCGGCCCAAACGATCGATGTTCGGATGGTAGAT
CTTCGTGATGAAGCGCACTTTGGGCGCTGACATTGGATAGTCCTCCGGTA
GGAACAGCTCCAGCTTGAACACGCCGCCCTCGAAGGGCGAATCGTTCGGT
CCGGTCACGATCACATGGAAGTAACGGGCATTGTTCTCATCGGGAATGGC
ATTGATCCCAGGCACTGGCTCCTGCATCAAACGTTGAGTCTCCTTGATGA
TGCGACGTGGCAGGCTGGACATGTCGACTGATAACT

BS05636.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG18319-PA 456 ben-RA 1..456 472..17 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
ben-RE 1810 CG18319-RE 166..622 472..16 2285 100 Minus
ben-RD 1852 CG18319-RD 208..664 472..16 2285 100 Minus
ben-RB 852 CG18319-RB 246..702 472..16 2285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13998161..13998617 472..16 2285 100 Minus
2L 23513712 2L 14563181..14563558 74..451 435 74.3 Plus
Blast to na_te.dros performed on 2015-02-13 01:52:31 has no hits.

BS05636.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:21 Download gff for BS05636.3prime
Subject Subject Range Query Range Percent Splice Strand
ben-PA 1..456 17..472 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:09 Download gff for BS05636.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18319-PA 1..456 17..472 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:29:23 Download gff for BS05636.3prime
Subject Subject Range Query Range Percent Splice Strand
ben-RB 236..705 13..480 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:22:39 Download gff for BS05636.3prime
Subject Subject Range Query Range Percent Splice Strand
ben-RB 236..705 13..480 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:22:39 Download gff for BS05636.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13998151..13998620 13..480 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:29:23 Download gff for BS05636.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13892184..13892653 13..480 98   Minus

BS05636.5prime Sequence

486 bp (485 high quality bases) assembled on 2005-12-02

> BS05636.5prime
GAAGTTATCAGTCGACATGTCCAGCCTGCCACGTCGCATCATCAAGGAGA
CTCAACGTTTGATGCAGGAGCCAGTGCCTGGGATCAATGCCATTCCCGAT
GAGAACAATGCCCGTTACTTCCATGTGATCGTGACCGGACCGAACGATTC
GCCCTTCGAGGGCGGCGTGTTCAAGCTGGAGCTGTTCCTACCGGAGGACT
ATCCAATGTCAGCGCCCAAAGTGCGCTTCATCACGAAGATCTACCATCCG
AACATCGATCGTTTGGGCCGCATTTGCCTCGACGTGCTGAAGGACAAGTG
GAGTCCAGCCCTGCAGATCCGGACCATATTGCTATCCATTCAGGCACTGC
TCAGTGCACCCAATCCCGACGATCCGCTGGCCAACGATGTGGCTGAGTTG
TGGAAGGTCAACGAGGCGGAGGCCATTCGCAATGCCCGCGAGTGGACCCA
GAAATATGCCGTCGAAGACTGAAAGCTTTCTAGACC

BS05636.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG18319-PA 456 ben-RA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
ben-RE 1810 CG18319-RE 166..622 17..473 2285 100 Plus
ben-RD 1852 CG18319-RD 208..664 17..473 2285 100 Plus
ben-RB 852 CG18319-RB 246..702 17..473 2285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13998161..13998617 17..473 2285 100 Plus
2L 23513712 2L 14563181..14563558 415..38 435 74.3 Minus
Blast to na_te.dros performed on 2015-02-10 15:52:09 has no hits.

BS05636.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:22 Download gff for BS05636.5prime
Subject Subject Range Query Range Percent Splice Strand
ben-PA 1..456 17..472 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:11 Download gff for BS05636.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18319-PA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:58:49 Download gff for BS05636.5prime
Subject Subject Range Query Range Percent Splice Strand
ben-RB 236..705 9..476 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:05 Download gff for BS05636.5prime
Subject Subject Range Query Range Percent Splice Strand
ben-RB 236..705 9..476 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:05 Download gff for BS05636.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13998151..13998620 9..476 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:58:49 Download gff for BS05636.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13892184..13892653 9..476 98   Plus

BS05636.complete Sequence

488 bp (488 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635180

> BS05636.complete
GAAGTTATCAGTCGACATGTCCAGCCTGCCACGTCGCATCATCAAGGAGA
CTCAACGTTTGATGCAGGAGCCAGTGCCTGGGATCAATGCCATTCCCGAT
GAGAACAATGCCCGTTACTTCCATGTGATCGTGACCGGACCGAACGATTC
GCCCTTCGAGGGCGGCGTGTTCAAGCTGGAGCTGTTCCTACCGGAGGACT
ATCCAATGTCAGCGCCCAAAGTGCGCTTCATCACGAAGATCTACCATCCG
AACATCGATCGTTTGGGCCGCATTTGCCTCGACGTGCTGAAGGACAAGTG
GAGTCCAGCCCTGCAGATCCGGACCATATTGCTATCCATTCAGGCACTGC
TCAGTGCACCCAATCCCGACGATCCGCTGGCCAACGATGTGGCTGAGTTG
TGGAAGGTCAACGAGGCGGAGGCCATTCGCAATGCCCGCGAGTGGACCCA
GAAATATGCCGTCGAAGACTGAAAGCTTTCTAGACCAT

BS05636.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
ben-RE 456 CG18319-PE 1..456 17..472 2280 100 Plus
ben-RD 456 CG18319-PD 1..456 17..472 2280 100 Plus
ben-RB 456 CG18319-PB 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
ben-RE 1810 CG18319-RE 166..622 17..473 2285 100 Plus
ben-RD 1852 CG18319-RD 208..664 17..473 2285 100 Plus
ben-RB 852 CG18319-RB 246..702 17..473 2285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13998161..13998617 17..473 2285 100 Plus
2L 23513712 2L 14563181..14563558 415..38 435 74.3 Minus
Blast to na_te.dros performed on 2014-11-28 00:15:47 has no hits.

BS05636.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:25:53 Download gff for BS05636.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:44 Download gff for BS05636.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RA 227..696 9..476 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:04 Download gff for BS05636.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RB 246..700 17..471 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:25:53 Download gff for BS05636.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RA 227..696 9..476 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:48 Download gff for BS05636.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RB 246..700 17..471 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:48 Download gff for BS05636.complete
Subject Subject Range Query Range Percent Splice Strand
X 13998161..13998615 17..471 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:04 Download gff for BS05636.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13892194..13892648 17..471 100   Plus

BS05636.pep Sequence

Translation from 16 to 471

> BS05636.pep
MSSLPRRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGG
VFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQ
IRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYAVE
D*

BS05636.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
ben-PE 151 CG18319-PE 1..151 1..151 792 100 Plus
ben-PD 151 CG18319-PD 1..151 1..151 792 100 Plus
ben-PB 151 CG18319-PB 1..151 1..151 792 100 Plus
ben-PC 151 CG18319-PC 1..151 1..151 792 100 Plus
ben-PA 151 CG18319-PA 1..151 1..151 792 100 Plus