Clone Sequence Records
BS05636.3prime Sequence
486 bp (485 high quality bases) assembled on 2005-12-02
> BS05636.3prime
ATGGTCTAGAAAGCTTTCAGTCTTCGACGGCATATTTCTGGGTCCACTCG
CGGGCATTGCGAATGGCCTCCGCCTCGTTGACCTTCCACAACTCAGCCAC
ATCGTTGGCCAGCGGATCGTCGGGATTGGGTGCACTGAGCAGTGCCTGAA
TGGATAGCAATATGGTCCGGATCTGCAGGGCTGGACTCCACTTGTCCTTC
AGCACGTCGAGGCAAATGCGGCCCAAACGATCGATGTTCGGATGGTAGAT
CTTCGTGATGAAGCGCACTTTGGGCGCTGACATTGGATAGTCCTCCGGTA
GGAACAGCTCCAGCTTGAACACGCCGCCCTCGAAGGGCGAATCGTTCGGT
CCGGTCACGATCACATGGAAGTAACGGGCATTGTTCTCATCGGGAATGGC
ATTGATCCCAGGCACTGGCTCCTGCATCAAACGTTGAGTCTCCTTGATGA
TGCGACGTGGCAGGCTGGACATGTCGACTGATAACT
BS05636.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18319-PA | 456 | ben-RA | 1..456 | 472..17 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ben-RE | 1810 | CG18319-RE | 166..622 | 472..16 | 2285 | 100 | Minus |
ben-RD | 1852 | CG18319-RD | 208..664 | 472..16 | 2285 | 100 | Minus |
ben-RB | 852 | CG18319-RB | 246..702 | 472..16 | 2285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:52:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13998161..13998617 | 472..16 | 2285 | 100 | Minus |
2L | 23513712 | 2L | 14563181..14563558 | 74..451 | 435 | 74.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:52:31 has no hits.
BS05636.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:21 Download gff for
BS05636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-PA | 1..456 | 17..472 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:09 Download gff for
BS05636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18319-PA | 1..456 | 17..472 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:29:23 Download gff for
BS05636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RB | 236..705 | 13..480 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:22:39 Download gff for
BS05636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RB | 236..705 | 13..480 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:22:39 Download gff for
BS05636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13998151..13998620 | 13..480 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:29:23 Download gff for
BS05636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13892184..13892653 | 13..480 | 98 | | Minus |
BS05636.5prime Sequence
486 bp (485 high quality bases) assembled on 2005-12-02
> BS05636.5prime
GAAGTTATCAGTCGACATGTCCAGCCTGCCACGTCGCATCATCAAGGAGA
CTCAACGTTTGATGCAGGAGCCAGTGCCTGGGATCAATGCCATTCCCGAT
GAGAACAATGCCCGTTACTTCCATGTGATCGTGACCGGACCGAACGATTC
GCCCTTCGAGGGCGGCGTGTTCAAGCTGGAGCTGTTCCTACCGGAGGACT
ATCCAATGTCAGCGCCCAAAGTGCGCTTCATCACGAAGATCTACCATCCG
AACATCGATCGTTTGGGCCGCATTTGCCTCGACGTGCTGAAGGACAAGTG
GAGTCCAGCCCTGCAGATCCGGACCATATTGCTATCCATTCAGGCACTGC
TCAGTGCACCCAATCCCGACGATCCGCTGGCCAACGATGTGGCTGAGTTG
TGGAAGGTCAACGAGGCGGAGGCCATTCGCAATGCCCGCGAGTGGACCCA
GAAATATGCCGTCGAAGACTGAAAGCTTTCTAGACC
BS05636.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18319-PA | 456 | ben-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ben-RE | 1810 | CG18319-RE | 166..622 | 17..473 | 2285 | 100 | Plus |
ben-RD | 1852 | CG18319-RD | 208..664 | 17..473 | 2285 | 100 | Plus |
ben-RB | 852 | CG18319-RB | 246..702 | 17..473 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13998161..13998617 | 17..473 | 2285 | 100 | Plus |
2L | 23513712 | 2L | 14563181..14563558 | 415..38 | 435 | 74.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:52:09 has no hits.
BS05636.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:22 Download gff for
BS05636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:11 Download gff for
BS05636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18319-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:58:49 Download gff for
BS05636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RB | 236..705 | 9..476 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:05 Download gff for
BS05636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RB | 236..705 | 9..476 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:05 Download gff for
BS05636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13998151..13998620 | 9..476 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:58:49 Download gff for
BS05636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13892184..13892653 | 9..476 | 98 | | Plus |
BS05636.complete Sequence
488 bp (488 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635180
> BS05636.complete
GAAGTTATCAGTCGACATGTCCAGCCTGCCACGTCGCATCATCAAGGAGA
CTCAACGTTTGATGCAGGAGCCAGTGCCTGGGATCAATGCCATTCCCGAT
GAGAACAATGCCCGTTACTTCCATGTGATCGTGACCGGACCGAACGATTC
GCCCTTCGAGGGCGGCGTGTTCAAGCTGGAGCTGTTCCTACCGGAGGACT
ATCCAATGTCAGCGCCCAAAGTGCGCTTCATCACGAAGATCTACCATCCG
AACATCGATCGTTTGGGCCGCATTTGCCTCGACGTGCTGAAGGACAAGTG
GAGTCCAGCCCTGCAGATCCGGACCATATTGCTATCCATTCAGGCACTGC
TCAGTGCACCCAATCCCGACGATCCGCTGGCCAACGATGTGGCTGAGTTG
TGGAAGGTCAACGAGGCGGAGGCCATTCGCAATGCCCGCGAGTGGACCCA
GAAATATGCCGTCGAAGACTGAAAGCTTTCTAGACCAT
BS05636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ben-RE | 456 | CG18319-PE | 1..456 | 17..472 | 2280 | 100 | Plus |
ben-RD | 456 | CG18319-PD | 1..456 | 17..472 | 2280 | 100 | Plus |
ben-RB | 456 | CG18319-PB | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ben-RE | 1810 | CG18319-RE | 166..622 | 17..473 | 2285 | 100 | Plus |
ben-RD | 1852 | CG18319-RD | 208..664 | 17..473 | 2285 | 100 | Plus |
ben-RB | 852 | CG18319-RB | 246..702 | 17..473 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13998161..13998617 | 17..473 | 2285 | 100 | Plus |
2L | 23513712 | 2L | 14563181..14563558 | 415..38 | 435 | 74.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:15:47 has no hits.
BS05636.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:25:53 Download gff for
BS05636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:44 Download gff for
BS05636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RA | 227..696 | 9..476 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:04 Download gff for
BS05636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RB | 246..700 | 17..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:25:53 Download gff for
BS05636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RA | 227..696 | 9..476 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:48 Download gff for
BS05636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RB | 246..700 | 17..471 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:48 Download gff for
BS05636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13998161..13998615 | 17..471 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:04 Download gff for
BS05636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13892194..13892648 | 17..471 | 100 | | Plus |
BS05636.pep Sequence
Translation from 16 to 471
> BS05636.pep
MSSLPRRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGG
VFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQ
IRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYAVE
D*
BS05636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ben-PE | 151 | CG18319-PE | 1..151 | 1..151 | 792 | 100 | Plus |
ben-PD | 151 | CG18319-PD | 1..151 | 1..151 | 792 | 100 | Plus |
ben-PB | 151 | CG18319-PB | 1..151 | 1..151 | 792 | 100 | Plus |
ben-PC | 151 | CG18319-PC | 1..151 | 1..151 | 792 | 100 | Plus |
ben-PA | 151 | CG18319-PA | 1..151 | 1..151 | 792 | 100 | Plus |