Clone Sequence Records
BS05637.3prime Sequence
924 bp (815 high quality bases) assembled on 2005-12-02
> BS05637.3prime
ATGGTCTAGAAAGCTTTTAGTTCTGGGTGGTGGGTGAGTGGACTTTGCCG
GCAAACAGTATGTTACCAGTGGACTCCTCCTCGATAAAGAACACAAACGG
CCGGTTTACGTTGAATTCCTCGATGGCGGTGCTGCCACCGAACTTGTTTT
CGATCTCCACAACGGTGGCTGCGTAGGCCTCCGTTCCCTTCTCGTTCACA
TTAATGCCGGCCTTCTGCAGGATGTTAGACACCTTTACTTTGCCGGCGAC
ATCAGCGCCGCGGGTTAATCCCGGCAGCGAGGCGCTGTCCTCAAAGATTT
CGCGCACACCCAGGCTGCGCAACGTCTCCTTAAGGTTCTGCTGGTAGTCG
AAATGGAACTTGGGCAGCGTCACCTTCACTTTCACCTCCTCCATGGCCCA
CTGAGCGCTCTTTAGCTCGTCGTTTTCCAGGTTCTTGACCAAGTCATGGA
TGCCATTCAGGGCGTAGGGCAGCAGGACGAACAGGGAGTTCTTGCCCTTG
TAGGGCAGACGCAGAATCTGCGCCTTCAGCTTCTCCGAGGTGGTGTAGTA
GAAGTAGTCGGTCTGCTCCATGAACTCCGCCCGCGACTGGTCGTCCTTGC
TGCGGAAGAAGGATCCCTGGAATGTGGTGGCAAACTGCCGCCGCCACAGA
CCGTTGAAGTAGATCAGATTGGTCAGCAACATTACGCTGCTGCGCACGTT
GTCCGGGGCTACTAGCTGCTGAAGTCTGCCCTGCGTGATGTTGGCGGCCC
AGGCGTTGATGGCATCTGCCGCCGCCTCGGGATTGGTGAAGTCTAGCGCC
TCCACCTCGCTGTCGTAGAAGTGTTTCAGCGTGGCCGTGAACTTCTGCTG
TGTCTCGATGAAGCTGTCCGTGAAGAGCTTGGTGCGCACACTGAGCGTCT
CGTGGAGCTGGGTCTCCTTCTTGA
BS05637.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11331-PA | 1344 | Spn27A-RA | 437..1344 | 924..17 | 4515 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn27A-RB | 2283 | CG11331-RB | 609..1516 | 924..17 | 4525 | 99.9 | Minus |
| Spn27A-RA | 1569 | CG11331-RA | 609..1516 | 924..17 | 4525 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6671832..6672739 | 17..924 | 4525 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:03:59 has no hits.
BS05637.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:23 Download gff for
BS05637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11331-PA | 438..1344 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:12 Download gff for
BS05637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11331-PA | 438..1344 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:00:02 Download gff for
BS05637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn27A-RA | 610..1522 | 8..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:36 Download gff for
BS05637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn27A-RA | 610..1522 | 8..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:36 Download gff for
BS05637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6671826..6672738 | 8..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:00:02 Download gff for
BS05637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6671826..6672738 | 8..923 | 99 | | Plus |
BS05637.5prime Sequence
853 bp (775 high quality bases) assembled on 2005-12-02
> BS05637.5prime
GAAGTTATCAGTCGACATGACAAAGATGGGCGGAAATTTGGCAGTGATGC
TGCTGTCGCTGTTTTTGAGTGCGTTAGCCACGGGCAACGGCAACTCCATA
CCGACGACCACGACGCCCCAGGGCGTATTCGAAACCCGTACGGACAAGCT
GCCCGGTGGCGCTGCCAGCGTGCCCAGTGGAGCGGGTATCTACGACGATA
TAGATACCTTTGTGCCCTTCCGGAGCGACTCGCACGATCCGTTCTCATGG
CATCTACTGAAGACGGTGCTGCAGAACGAGACAGCCGACAAGAATGTGAT
CATCTCGCCGTTCTCCGTCAAACTGGTGCTGGCCCTGCTGGCTGAGGCGG
CCGGAGCCGGAACCCAGACGCAAGTGGAGCTGGCCAACACGCAAACAGAC
ATTCGATCGCAAAATAATGTGCGGGAGTTCTACCGCAAGACACTTAATTC
CTTCAAGAAGGAGAACCAGCTCCACGAGACGCTCAGTGTGCGCACCAAGC
TCTTCACGGACAGCTTCATCGAGACACAGCAGAAGTTCACGGCCACGCTG
AAACACTTCTACGACAGCGAGGTGGAGGCGCTAGACTTCACCAATCCCGA
GGCGGCGGCAGATGCCATCAACGCCTGGGCCGCCAACATCACGCAGGGCA
GACTTCAGCAGCTAGTAGCCCCGGACAACGTGCGCAGCAGCGTAATGTTG
CTGACCAATCTGATCTACTTCAACGGTCTGTGGCGGCGGCAGTTTGCCAC
CACATTCCAGGGATCCTTCTTCCGCAGCAAAGACGACCAGTCGCGGGCGG
AGTTCATGGAGCAGACCGACTACTTCTACTACACCACCTCGGAAAAGCTG
AAG
BS05637.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11331-PA | 1344 | Spn27A-RA | 1..837 | 17..853 | 4135 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn27A-RB | 2283 | CG11331-RB | 173..1009 | 17..853 | 4155 | 99.8 | Plus |
| Spn27A-RA | 1569 | CG11331-RA | 173..1009 | 17..853 | 4155 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6672339..6673175 | 853..17 | 4155 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:59:07 has no hits.
BS05637.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:24 Download gff for
BS05637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11331-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:13 Download gff for
BS05637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11331-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:13:18 Download gff for
BS05637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn27A-RA | 168..1009 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:50 Download gff for
BS05637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn27A-RA | 168..1009 | 9..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:50 Download gff for
BS05637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6672339..6673180 | 9..853 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:13:18 Download gff for
BS05637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6672339..6673180 | 9..853 | 99 | | Minus |
BS05637.complete Sequence
1376 bp (1376 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635181
> BS05637.complete
GAAGTTATCAGTCGACATGACAAAGATGGGCGGAAATTTGGCAGTGATGC
TGCTGTCGCTGTTTTTGAGTGCGTTAGCCACGGGCAACGGCAACTCCATA
CCGACGACCACGACGCCCCAGGGCGTATTCGAAACCCGTACGGACAAGCT
GCCCGGTGGCGCTGCCAGCGTGCCCAGTGGAGCGGGTATCTACGACGATA
TAGATACCTTTGTGCCCTTCCGGAGCGACTCGCACGATCCGTTCTCATGG
CATCTACTGAAGACGGTGCTGCAGAACGAGACAGCCGACAAGAATGTGAT
CATCTCGCCGTTCTCCGTCAAACTGGTGCTGGCCCTGCTGGCTGAGGCGG
CCGGAGCCGGAACCCAGACGCAAGTGGAGCTGGCCAACACGCAAACAGAC
ATTCGATCGCAAAATAATGTGCGGGAGTTCTACCGCAAGACACTTAATTC
CTTCAAGAAGGAGAACCAGCTCCACGAGACGCTCAGTGTGCGCACCAAGC
TCTTCACGGACAGCTTCATCGAGACACAGCAGAAGTTCACGGCCACGCTG
AAACACTTCTACGACAGCGAGGTGGAGGCGCTAGACTTCACCAATCCCGA
GGCGGCGGCAGATGCCATCAACGCCTGGGCCGCCAACATCACGCAGGGCA
GACTTCAGCAGCTAGTAGCCCCGGACAACGTGCGCAGCAGCGTAATGTTG
CTGACCAATCTGATCTACTTCAACGGTCTGTGGCGGCGGCAGTTTGCCAC
CACATTCCAGGGATCCTTCTTCCGCAGCAAGGACGACCAGTCGCGGGCGG
AGTTCATGGAGCAGACCGACTACTTCTACTACACCACCTCGGAGAAGCTG
AAGGCGCAGATTCTGCGTCTGCCCTACAAGGGCAAGAACTCCCTGTTCGT
CCTGCTGCCCTACGCCCTGAATGGCATCCATGACTTGGTCAAGAACCTGG
AAAACGACGAGCTAAAGAGCGCTCAGTGGGCCATGGAGGAGGTGAAAGTG
AAGGTGACGCTGCCCAAGTTCCATTTCGACTACCAGCAGAACCTTAAGGA
GACGTTGCGCAGCCTGGGTGTGCGCGAAATCTTTGAGGACAGCGCCTCGC
TGCCGGGATTAACCCGCGGCGCTGATGTCGCCGGCAAAGTAAAGGTGTCT
AACATCCTGCAGAAGGCCGGCATTAATGTGAACGAGAAGGGAACGGAGGC
CTACGCAGCCACCGTTGTGGAGATCGAAAACAAGTTCGGTGGCAGCACCG
CCATCGAGGAATTCAACGTAAACCGGCCGTTTGTGTTCTTTATCGAGGAG
GAGTCCACTGGTAACATACTGTTTGCCGGCAAAGTCCACTCACCCACCAC
CCAGAACTAAAAGCTTTCTAGACCAT
BS05637.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn27A-RB | 1344 | CG11331-PB | 1..1344 | 17..1360 | 6720 | 100 | Plus |
| Spn27A-RA | 1344 | CG11331-PA | 1..1344 | 17..1360 | 6720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn27A-RB | 2283 | CG11331-RB | 173..1516 | 17..1360 | 6720 | 100 | Plus |
| Spn27A-RA | 1569 | CG11331-RA | 173..1516 | 17..1360 | 6720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6671832..6673175 | 1360..17 | 6720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:30:28 has no hits.
BS05637.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:04 Download gff for
BS05637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn27A-RA | 1..1344 | 17..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:53 Download gff for
BS05637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn27A-RA | 165..1519 | 9..1369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:35 Download gff for
BS05637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn27A-RA | 173..1514 | 17..1358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:04 Download gff for
BS05637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn27A-RA | 165..1519 | 9..1369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:37 Download gff for
BS05637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn27A-RA | 173..1514 | 17..1358 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:37 Download gff for
BS05637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6671834..6673175 | 17..1358 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:35 Download gff for
BS05637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6671834..6673175 | 17..1358 | 100 | | Minus |
BS05637.pep Sequence
Translation from 16 to 1359
> BS05637.pep
MTKMGGNLAVMLLSLFLSALATGNGNSIPTTTTPQGVFETRTDKLPGGAA
SVPSGAGIYDDIDTFVPFRSDSHDPFSWHLLKTVLQNETADKNVIISPFS
VKLVLALLAEAAGAGTQTQVELANTQTDIRSQNNVREFYRKTLNSFKKEN
QLHETLSVRTKLFTDSFIETQQKFTATLKHFYDSEVEALDFTNPEAAADA
INAWAANITQGRLQQLVAPDNVRSSVMLLTNLIYFNGLWRRQFATTFQGS
FFRSKDDQSRAEFMEQTDYFYYTTSEKLKAQILRLPYKGKNSLFVLLPYA
LNGIHDLVKNLENDELKSAQWAMEEVKVKVTLPKFHFDYQQNLKETLRSL
GVREIFEDSASLPGLTRGADVAGKVKVSNILQKAGINVNEKGTEAYAATV
VEIENKFGGSTAIEEFNVNRPFVFFIEEESTGNILFAGKVHSPTTQN*
BS05637.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn27A-PB | 447 | CG11331-PB | 1..447 | 1..447 | 2276 | 100 | Plus |
| Spn27A-PA | 447 | CG11331-PA | 1..447 | 1..447 | 2276 | 100 | Plus |
| Spn55B-PA | 374 | CG10913-PA | 30..368 | 92..438 | 409 | 32.4 | Plus |
| Spn42Dd-PB | 372 | CG9456-PB | 24..372 | 84..443 | 389 | 29.7 | Plus |
| Spn38F-PA | 372 | CG9334-PA | 21..370 | 81..443 | 389 | 29.2 | Plus |
