Clone BS05638 Report

Search the DGRC for BS05638

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG4882-RA
Protein status:BS05638.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05638.3prime Sequence

912 bp (736 high quality bases) assembled on 2005-12-02

> BS05638.3prime
ATGGTCTAGAAAGCTTCTAGCCGTTGTGCGTGATAGTCGGCGGCACATAG
AAGGTGTCTGCTGCCTTGGGCTTCTTCTTTTTGCCGAACCAGCGCTTGGG
ATAGTAGACCTTCTTCTTGTAGATCTGGATGTCGATGTCGTCCCGGTTCT
CGAAGAACCACAGGTTCTGCCGCTTCGCCTCCAGTTCGCTGAGGGTCTTC
TGGATGGTGGCCTTACGCTCCTCCACGCTCTGCGAATCCAGTTGTCGCTG
CACCGCTGCCTCAAACTTCTTGGCCCACTCCTGATACGACTCGCCGTAGT
CGGCCAGCAGTTTGGGCTCAAACTTCTGCACATTGGCTTTGACGCTGTTC
TCCAGTAGCGATTGAATGGCATTCGATTTGCTACTCTTCTCAACGGCTTC
CTGCAGGGACTTCAGCAGCTCTTCGGATCCCTCCAGCTTGAGGCTTTCAA
CTATGCTCTGTGCGGCTAAAAGAGTCTCCTTGTGCAGGGCAGCTGAGTTC
GAGGCCAGAAAGCTGGAGGCCTCGGGCACTTGTCCGGTTAGGACATAGCC
AAGTAGGGCAACGTTCTGCTTCAGCTCTTTCAAGGACCCTTCGCCGGAGC
CCAATCGAACCATGGCGCGACCCAGTTTCTTCTCTTCGGTATTTTCGCTG
GCGTCGTCGGGGTAATTGCGAATGAACTTCACGCGAACTTTTTCCACTTC
AACATTTTTGGCAGGAGGTTGAACTTGAGAGGACTCGAANGGCTTGAACT
CCTTGGCGAAGGACCAGAAGGACTGTAGGGCCAGGGACTCCAGCNACTCG
TTGTTGCATAAGTTTCTGTCCACGAGAATAGTGGCCAGCTGGGCAGATTT
CACCGCGTGGCCATTGTGCAGCAGGAAGTCCACAGGAAGCAGCCAGAGAA
CTGGTCCCACAA

BS05638.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4882-PA 1221 CG4882-RA 356..1221 882..17 4267 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4882-RB 1626 CG4882-RB 642..1533 907..17 4398 99.6 Minus
CG4882-RA 1397 CG4882-RA 413..1304 907..17 4398 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23880910..23881588 17..695 3395 100 Plus
2R 25286936 2R 23881720..23881934 694..907 988 98.1 Plus
Blast to na_te.dros performed on 2015-02-10 19:21:13 has no hits.

BS05638.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:26 Download gff for BS05638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-PA 328..1221 17..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:15 Download gff for BS05638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-PA 328..1221 17..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:58 Download gff for BS05638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-RA 411..1304 17..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:00 Download gff for BS05638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-RA 411..1304 17..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:00 Download gff for BS05638.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23881721..23881936 695..910 97   Plus
2R 23880910..23881587 17..694 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:58 Download gff for BS05638.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19768433..19769110 17..694 100 <- Plus
arm_2R 19769244..19769459 695..910 97   Plus

BS05638.5prime Sequence

854 bp (780 high quality bases) assembled on 2005-12-02

> BS05638.5prime
GAAGTTATCAGTCGACATGCTGCGATCGAGGATTTCCTGCGCACTGCCAC
CCAGGAGACTGGTGTCCTACTTCTCGGCGGAATTCAACAAGGTGGCGCAC
GAGGGACCGGCTAAATTCGCCGCAGGCAGCAGTCATGCCGTAACGAGTGT
GGATTTGGATGTGTTCGTCAATCCGGATAACCGTCCCATGGACCTGGTGG
ACCGGCTGCTCAAGCTCAGGAAACAGAAGGAGGCCAGTTTGGTGCCGCTG
ATTCCCAGTGTCTTGGTCAAGCAATTGCTGGACTCCACCAATCCGCAGGA
GACGATATCGGTGCTCCGTAATCCCATCCAGTACGGGCTCTTTGTGGACC
AGTTCTCTGGCTGCTTCCTGTTGGACTTCCTGCTGCACAATGGCCACGCG
GTGGAATCTGCCCAGCTGGCCACTATTCTCGTGGACAGAAACTTATGCAA
CAACGAGTTGCTGGAGTCCCTGGCCCTACAGTCCTTCTGGTCCTTCGCCA
AGGAGTTCAAGCCCTTCGAGTCCTCTCAAGTTCAACCTCCTGCCAAAAAT
GTTGAAGTGGAAAAAGTTCGCGTGAAGTTCATTCGCAATTACCCCGACGA
CGCCAGCGAAAATACCGAAGAGAAGAAACTGGGTCGCGCCATGGTTCGAT
TGGGCTCCGGCGAAGGGTCCTTGAAAGAGCTGAAGCAGAACGTTGCCCTA
CTTGGCTATGTCCTAACCGGACAAGTGCCCGAGGCCTCCAGCTTTCTGGC
CTCGAACTCAGCTGCCCTGCACAAGGAGACTCTTTTAGCCGCACAGAGCA
TAGTTGAAAGCCTCAAGCTGGAGGGATCCGAAGAGCTGCTGAAGTCCCTG
CAGG

BS05638.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4882-PA 1221 CG4882-RA 1..838 17..854 4190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4882-RB 1626 CG4882-RB 313..1150 17..854 4190 100 Plus
CG4882-RA 1397 CG4882-RA 84..921 17..854 4190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23881720..23882063 560..217 1720 100 Minus
2R 25286936 2R 23881293..23881588 854..559 1480 100 Minus
2R 25286936 2R 23882114..23882317 220..17 1020 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:18:36 has no hits.

BS05638.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:27 Download gff for BS05638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-PA 1..838 17..854 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:16 Download gff for BS05638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-PA 1..838 17..854 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:42 Download gff for BS05638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-RA 75..921 9..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:41 Download gff for BS05638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-RA 75..921 9..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:41 Download gff for BS05638.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23881293..23881587 560..854 100 <- Minus
2R 23881721..23882060 220..559 100 <- Minus
2R 23882115..23882326 9..219 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:42 Download gff for BS05638.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19768816..19769110 560..854 100 <- Minus
arm_2R 19769244..19769583 220..559 100 <- Minus
arm_2R 19769638..19769849 9..219 98   Minus

BS05638.complete Sequence

1253 bp (1253 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635182

> BS05638.complete
GAAGTTATCAGTCGACATGCTGCGATCGAGGATTTCCTGCGCACTGCCAC
CCAGGAGACTGGTGTCCTACTTCTCGGCGGAATTCAACAAGGTGGCGCAC
GAGGGACCGGCTAAATTCGCCGCAGGCAGCAGTCATGCCGTAACGAGTGT
GGATTTGGATGTGTTCGTCAATCCGGATAACCGTCCCATGGACCTGGTGG
ACCGGCTGCTCAAGCTCAGGAAACAGAAGGAGGCCAGTTTGGTGCCGCTG
ATTCCCAGTGTCTTGGTCAAGCAATTGCTGGACTCCACCAATCCGCAGGA
GACGATATCGGTGCTCCGTAATCCCATCCAGTACGGGCTCTTTGTGGACC
AGTTCTCTGGCTGCTTCCTGTTGGACTTCCTGCTGCACAATGGCCACGCG
GTGGAATCTGCCCAGCTGGCCACTATTCTCGTGGACAGAAACTTATGCAA
CAACGAGTTGCTGGAGTCCCTGGCCCTACAGTCCTTCTGGTCCTTCGCCA
AGGAGTTCAAGCCCTTCGAGTCCTCTCAAGTTCAACCTCCTGCCAAAAAT
GTTGAAGTGGAAAAAGTTCGCGTGAAGTTCATTCGCAATTACCCCGACGA
CGCCAGCGAAAATACCGAAGAGAAGAAACTGGGTCGCGCCATGGTTCGAT
TGGGCTCCGGCGAAGGGTCCTTGAAAGAGCTGAAGCAGAACGTTGCCCTA
CTTGGCTATGTCCTAACCGGACAAGTGCCCGAGGCCTCCAGCTTTCTGGC
CTCGAACTCAGCTGCCCTGCACAAGGAGACTCTTTTAGCCGCACAGAGCA
TAGTTGAAAGCCTCAAGCTGGAGGGATCCGAAGAGCTGCTGAAGTCCCTG
CAGGAAGCCGTTGAGAAGAGTAGCAAATCGAATGCCATTCAATCGCTACT
GGAGAACAGCGTCAAAGCCAATGTGCAGAAGTTTGAGCCCAAACTGCTGG
CCGACTACGGCGAGTCGTATCAGGAGTGGGCCAAGAAGTTTGAGGCAGCG
GTGCAGCGACAACTGGATTCGCAGAGCGTGGAGGAGCGTAAGGCCACCAT
CCAGAAGACCCTCAGCGAACTGGAGGCGAAGCGGCAGAACCTGTGGTTCT
TCGAGAACCGGGACGACATCGACATCCAGATCTACAAGAAGAAGGTCTAC
TATCCCAAGCGCTGGTTCGGCAAAAAGAAGAAGCCCAAGGCAGCAGACAC
CTTCTATGTGCCGCCGACTATCACGCACAACGGCTAGAAGCTTTCTAGAC
CAT

BS05638.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4882-RB 1221 CG4882-PB 1..1221 17..1237 6105 100 Plus
CG4882-RA 1221 CG4882-PA 1..1221 17..1237 6105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4882-RB 1626 CG4882-RB 313..1533 17..1237 6105 100 Plus
CG4882-RA 1397 CG4882-RA 84..1304 17..1237 6105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23880910..23881588 1237..559 3395 100 Minus
2R 25286936 2R 23881720..23882063 560..217 1720 100 Minus
2R 25286936 2R 23882114..23882317 220..17 1020 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:48:44 has no hits.

BS05638.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:05 Download gff for BS05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG4882-RA 1..1221 17..1237 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:54 Download gff for BS05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG4882-RA 106..1335 9..1237 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:34 Download gff for BS05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG4882-RA 84..1304 17..1237 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:05 Download gff for BS05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG4882-RA 106..1335 9..1237 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:12 Download gff for BS05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG4882-RA 84..1304 17..1237 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:12 Download gff for BS05638.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23880910..23881587 560..1237 100 <- Minus
2R 23881721..23882060 220..559 100 <- Minus
2R 23882115..23882317 17..219 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:34 Download gff for BS05638.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19768433..19769110 560..1237 100 <- Minus
arm_2R 19769244..19769583 220..559 100 <- Minus
arm_2R 19769638..19769840 17..219 100   Minus

BS05638.pep Sequence

Translation from 16 to 1236

> BS05638.pep
MLRSRISCALPPRRLVSYFSAEFNKVAHEGPAKFAAGSSHAVTSVDLDVF
VNPDNRPMDLVDRLLKLRKQKEASLVPLIPSVLVKQLLDSTNPQETISVL
RNPIQYGLFVDQFSGCFLLDFLLHNGHAVESAQLATILVDRNLCNNELLE
SLALQSFWSFAKEFKPFESSQVQPPAKNVEVEKVRVKFIRNYPDDASENT
EEKKLGRAMVRLGSGEGSLKELKQNVALLGYVLTGQVPEASSFLASNSAA
LHKETLLAAQSIVESLKLEGSEELLKSLQEAVEKSSKSNAIQSLLENSVK
ANVQKFEPKLLADYGESYQEWAKKFEAAVQRQLDSQSVEERKATIQKTLS
ELEAKRQNLWFFENRDDIDIQIYKKKVYYPKRWFGKKKKPKAADTFYVPP
TITHNG*

BS05638.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4882-PB 406 CG4882-PB 1..406 1..406 2048 100 Plus
CG4882-PA 406 CG4882-PA 1..406 1..406 2048 100 Plus