Clone Sequence Records
BS05638.3prime Sequence
912 bp (736 high quality bases) assembled on 2005-12-02
> BS05638.3prime
ATGGTCTAGAAAGCTTCTAGCCGTTGTGCGTGATAGTCGGCGGCACATAG
AAGGTGTCTGCTGCCTTGGGCTTCTTCTTTTTGCCGAACCAGCGCTTGGG
ATAGTAGACCTTCTTCTTGTAGATCTGGATGTCGATGTCGTCCCGGTTCT
CGAAGAACCACAGGTTCTGCCGCTTCGCCTCCAGTTCGCTGAGGGTCTTC
TGGATGGTGGCCTTACGCTCCTCCACGCTCTGCGAATCCAGTTGTCGCTG
CACCGCTGCCTCAAACTTCTTGGCCCACTCCTGATACGACTCGCCGTAGT
CGGCCAGCAGTTTGGGCTCAAACTTCTGCACATTGGCTTTGACGCTGTTC
TCCAGTAGCGATTGAATGGCATTCGATTTGCTACTCTTCTCAACGGCTTC
CTGCAGGGACTTCAGCAGCTCTTCGGATCCCTCCAGCTTGAGGCTTTCAA
CTATGCTCTGTGCGGCTAAAAGAGTCTCCTTGTGCAGGGCAGCTGAGTTC
GAGGCCAGAAAGCTGGAGGCCTCGGGCACTTGTCCGGTTAGGACATAGCC
AAGTAGGGCAACGTTCTGCTTCAGCTCTTTCAAGGACCCTTCGCCGGAGC
CCAATCGAACCATGGCGCGACCCAGTTTCTTCTCTTCGGTATTTTCGCTG
GCGTCGTCGGGGTAATTGCGAATGAACTTCACGCGAACTTTTTCCACTTC
AACATTTTTGGCAGGAGGTTGAACTTGAGAGGACTCGAANGGCTTGAACT
CCTTGGCGAAGGACCAGAAGGACTGTAGGGCCAGGGACTCCAGCNACTCG
TTGTTGCATAAGTTTCTGTCCACGAGAATAGTGGCCAGCTGGGCAGATTT
CACCGCGTGGCCATTGTGCAGCAGGAAGTCCACAGGAAGCAGCCAGAGAA
CTGGTCCCACAA
BS05638.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4882-PA | 1221 | CG4882-RA | 356..1221 | 882..17 | 4267 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4882-RB | 1626 | CG4882-RB | 642..1533 | 907..17 | 4398 | 99.6 | Minus |
CG4882-RA | 1397 | CG4882-RA | 413..1304 | 907..17 | 4398 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:21:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23880910..23881588 | 17..695 | 3395 | 100 | Plus |
2R | 25286936 | 2R | 23881720..23881934 | 694..907 | 988 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:21:13 has no hits.
BS05638.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:26 Download gff for
BS05638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-PA | 328..1221 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:15 Download gff for
BS05638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-PA | 328..1221 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:58 Download gff for
BS05638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-RA | 411..1304 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:00 Download gff for
BS05638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-RA | 411..1304 | 17..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:00 Download gff for
BS05638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23881721..23881936 | 695..910 | 97 | | Plus |
2R | 23880910..23881587 | 17..694 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:58 Download gff for
BS05638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19768433..19769110 | 17..694 | 100 | <- | Plus |
arm_2R | 19769244..19769459 | 695..910 | 97 | | Plus |
BS05638.5prime Sequence
854 bp (780 high quality bases) assembled on 2005-12-02
> BS05638.5prime
GAAGTTATCAGTCGACATGCTGCGATCGAGGATTTCCTGCGCACTGCCAC
CCAGGAGACTGGTGTCCTACTTCTCGGCGGAATTCAACAAGGTGGCGCAC
GAGGGACCGGCTAAATTCGCCGCAGGCAGCAGTCATGCCGTAACGAGTGT
GGATTTGGATGTGTTCGTCAATCCGGATAACCGTCCCATGGACCTGGTGG
ACCGGCTGCTCAAGCTCAGGAAACAGAAGGAGGCCAGTTTGGTGCCGCTG
ATTCCCAGTGTCTTGGTCAAGCAATTGCTGGACTCCACCAATCCGCAGGA
GACGATATCGGTGCTCCGTAATCCCATCCAGTACGGGCTCTTTGTGGACC
AGTTCTCTGGCTGCTTCCTGTTGGACTTCCTGCTGCACAATGGCCACGCG
GTGGAATCTGCCCAGCTGGCCACTATTCTCGTGGACAGAAACTTATGCAA
CAACGAGTTGCTGGAGTCCCTGGCCCTACAGTCCTTCTGGTCCTTCGCCA
AGGAGTTCAAGCCCTTCGAGTCCTCTCAAGTTCAACCTCCTGCCAAAAAT
GTTGAAGTGGAAAAAGTTCGCGTGAAGTTCATTCGCAATTACCCCGACGA
CGCCAGCGAAAATACCGAAGAGAAGAAACTGGGTCGCGCCATGGTTCGAT
TGGGCTCCGGCGAAGGGTCCTTGAAAGAGCTGAAGCAGAACGTTGCCCTA
CTTGGCTATGTCCTAACCGGACAAGTGCCCGAGGCCTCCAGCTTTCTGGC
CTCGAACTCAGCTGCCCTGCACAAGGAGACTCTTTTAGCCGCACAGAGCA
TAGTTGAAAGCCTCAAGCTGGAGGGATCCGAAGAGCTGCTGAAGTCCCTG
CAGG
BS05638.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4882-PA | 1221 | CG4882-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:18:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4882-RB | 1626 | CG4882-RB | 313..1150 | 17..854 | 4190 | 100 | Plus |
CG4882-RA | 1397 | CG4882-RA | 84..921 | 17..854 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23881720..23882063 | 560..217 | 1720 | 100 | Minus |
2R | 25286936 | 2R | 23881293..23881588 | 854..559 | 1480 | 100 | Minus |
2R | 25286936 | 2R | 23882114..23882317 | 220..17 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:18:36 has no hits.
BS05638.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:27 Download gff for
BS05638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:16 Download gff for
BS05638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:42 Download gff for
BS05638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-RA | 75..921 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:41 Download gff for
BS05638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-RA | 75..921 | 9..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:41 Download gff for
BS05638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23881293..23881587 | 560..854 | 100 | <- | Minus |
2R | 23881721..23882060 | 220..559 | 100 | <- | Minus |
2R | 23882115..23882326 | 9..219 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:42 Download gff for
BS05638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19768816..19769110 | 560..854 | 100 | <- | Minus |
arm_2R | 19769244..19769583 | 220..559 | 100 | <- | Minus |
arm_2R | 19769638..19769849 | 9..219 | 98 | | Minus |
BS05638.complete Sequence
1253 bp (1253 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635182
> BS05638.complete
GAAGTTATCAGTCGACATGCTGCGATCGAGGATTTCCTGCGCACTGCCAC
CCAGGAGACTGGTGTCCTACTTCTCGGCGGAATTCAACAAGGTGGCGCAC
GAGGGACCGGCTAAATTCGCCGCAGGCAGCAGTCATGCCGTAACGAGTGT
GGATTTGGATGTGTTCGTCAATCCGGATAACCGTCCCATGGACCTGGTGG
ACCGGCTGCTCAAGCTCAGGAAACAGAAGGAGGCCAGTTTGGTGCCGCTG
ATTCCCAGTGTCTTGGTCAAGCAATTGCTGGACTCCACCAATCCGCAGGA
GACGATATCGGTGCTCCGTAATCCCATCCAGTACGGGCTCTTTGTGGACC
AGTTCTCTGGCTGCTTCCTGTTGGACTTCCTGCTGCACAATGGCCACGCG
GTGGAATCTGCCCAGCTGGCCACTATTCTCGTGGACAGAAACTTATGCAA
CAACGAGTTGCTGGAGTCCCTGGCCCTACAGTCCTTCTGGTCCTTCGCCA
AGGAGTTCAAGCCCTTCGAGTCCTCTCAAGTTCAACCTCCTGCCAAAAAT
GTTGAAGTGGAAAAAGTTCGCGTGAAGTTCATTCGCAATTACCCCGACGA
CGCCAGCGAAAATACCGAAGAGAAGAAACTGGGTCGCGCCATGGTTCGAT
TGGGCTCCGGCGAAGGGTCCTTGAAAGAGCTGAAGCAGAACGTTGCCCTA
CTTGGCTATGTCCTAACCGGACAAGTGCCCGAGGCCTCCAGCTTTCTGGC
CTCGAACTCAGCTGCCCTGCACAAGGAGACTCTTTTAGCCGCACAGAGCA
TAGTTGAAAGCCTCAAGCTGGAGGGATCCGAAGAGCTGCTGAAGTCCCTG
CAGGAAGCCGTTGAGAAGAGTAGCAAATCGAATGCCATTCAATCGCTACT
GGAGAACAGCGTCAAAGCCAATGTGCAGAAGTTTGAGCCCAAACTGCTGG
CCGACTACGGCGAGTCGTATCAGGAGTGGGCCAAGAAGTTTGAGGCAGCG
GTGCAGCGACAACTGGATTCGCAGAGCGTGGAGGAGCGTAAGGCCACCAT
CCAGAAGACCCTCAGCGAACTGGAGGCGAAGCGGCAGAACCTGTGGTTCT
TCGAGAACCGGGACGACATCGACATCCAGATCTACAAGAAGAAGGTCTAC
TATCCCAAGCGCTGGTTCGGCAAAAAGAAGAAGCCCAAGGCAGCAGACAC
CTTCTATGTGCCGCCGACTATCACGCACAACGGCTAGAAGCTTTCTAGAC
CAT
BS05638.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4882-RB | 1221 | CG4882-PB | 1..1221 | 17..1237 | 6105 | 100 | Plus |
CG4882-RA | 1221 | CG4882-PA | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4882-RB | 1626 | CG4882-RB | 313..1533 | 17..1237 | 6105 | 100 | Plus |
CG4882-RA | 1397 | CG4882-RA | 84..1304 | 17..1237 | 6105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23880910..23881588 | 1237..559 | 3395 | 100 | Minus |
2R | 25286936 | 2R | 23881720..23882063 | 560..217 | 1720 | 100 | Minus |
2R | 25286936 | 2R | 23882114..23882317 | 220..17 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:48:44 has no hits.
BS05638.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:05 Download gff for
BS05638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-RA | 1..1221 | 17..1237 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:54 Download gff for
BS05638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-RA | 106..1335 | 9..1237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:34 Download gff for
BS05638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-RA | 84..1304 | 17..1237 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:05 Download gff for
BS05638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-RA | 106..1335 | 9..1237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:12 Download gff for
BS05638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-RA | 84..1304 | 17..1237 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:12 Download gff for
BS05638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23880910..23881587 | 560..1237 | 100 | <- | Minus |
2R | 23881721..23882060 | 220..559 | 100 | <- | Minus |
2R | 23882115..23882317 | 17..219 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:34 Download gff for
BS05638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19768433..19769110 | 560..1237 | 100 | <- | Minus |
arm_2R | 19769244..19769583 | 220..559 | 100 | <- | Minus |
arm_2R | 19769638..19769840 | 17..219 | 100 | | Minus |
BS05638.pep Sequence
Translation from 16 to 1236
> BS05638.pep
MLRSRISCALPPRRLVSYFSAEFNKVAHEGPAKFAAGSSHAVTSVDLDVF
VNPDNRPMDLVDRLLKLRKQKEASLVPLIPSVLVKQLLDSTNPQETISVL
RNPIQYGLFVDQFSGCFLLDFLLHNGHAVESAQLATILVDRNLCNNELLE
SLALQSFWSFAKEFKPFESSQVQPPAKNVEVEKVRVKFIRNYPDDASENT
EEKKLGRAMVRLGSGEGSLKELKQNVALLGYVLTGQVPEASSFLASNSAA
LHKETLLAAQSIVESLKLEGSEELLKSLQEAVEKSSKSNAIQSLLENSVK
ANVQKFEPKLLADYGESYQEWAKKFEAAVQRQLDSQSVEERKATIQKTLS
ELEAKRQNLWFFENRDDIDIQIYKKKVYYPKRWFGKKKKPKAADTFYVPP
TITHNG*
BS05638.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4882-PB | 406 | CG4882-PB | 1..406 | 1..406 | 2048 | 100 | Plus |
CG4882-PA | 406 | CG4882-PA | 1..406 | 1..406 | 2048 | 100 | Plus |