Clone Sequence Records
BS05639.3prime Sequence
967 bp (809 high quality bases) assembled on 2005-12-02
> BS05639.3prime
ATGGTCTAGAAAGCTTCTATCTAGTGGAGTGTTTGCTTGTGGGCGCCTTT
TCTGGTGGCTCGTCCGCCGTAGAAGATGTCTGTGCTGCTTCGCTTGCTGA
ATCGGATTCAGTGTGGATTGAATGCTCCACTCCGTCGTTAAGGGCGGCTG
CCAGCTCGCCGTTGAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCC
TCGTGCTCCAGGAAAAGACCCTTCATTGTGCCATTGGACCAGAACTCCAT
TGCGTACGCCAGCAGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGC
CCACAAAGACGACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCT
ATGGAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATC
TTCGCGTGATACGGAAACCCGTTTGTCGTTGAGATGCATCTGGCCAAAGC
TTGACGCCACCAAATCGCCGGGGAGACCAAAGCGGTTGTAATCGCCACCA
TAAATGTCCTTAACTAACTTGTCCACCTTCCTATTGTCACCCTTGGTGGC
CAGTTGGATGGCCTCTTCGAAGGATGTGCAGCCGGTGAGTAGACAACACA
GGCCGAGGAATGTACCGCCGCCCAAGCTCGTGCCCGAAATCCGCTTGTAG
TTGTCGGGACCGTAGACCGCCAGGATGGAGACTCCGGATCCGACGTTCAC
CAGAATAAACGGAAACGGTTGAGAGAAATTGAACTGCTGCTTTTCGCTTT
TTAGAATGTCACGTGCGTTTTCGTAGTAGTAGCACTCCGTGCGATTATGC
AGATCGGCGAAGAGAATGCCTTTGATGAGCGTGTCCAGCTCGTCGAATTT
AGCAGCTTCATGTTGACTTGGTCGCGGAAATCCTGCTCGAACTTGAATGC
GCCCACGCCGGTGGCACAAACCGTGGTCACCAGCTCGGCCATGCCCTTCT
GCTTGGCAGCCGATTAG
BS05639.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5725-PD | 1206 | fbl-RD | 370..1206 | 853..17 | 4185 | 100 | Minus |
| CG5725-PB | 1254 | fbl-RB | 418..1254 | 853..17 | 4185 | 100 | Minus |
| CG5725-PA | 1260 | fbl-RA | 424..1260 | 853..17 | 4185 | 100 | Minus |
| CG5725-PC | 1206 | fbl-RC | 370..1206 | 853..17 | 4185 | 100 | Minus |
| CG5725-PE | 1539 | fbl-RE | 703..1539 | 853..17 | 4185 | 100 | Minus |
| CG5725-PD | 1206 | fbl-RD | 264..369 | 958..853 | 480 | 98.1 | Minus |
| CG5725-PB | 1254 | fbl-RB | 312..417 | 958..853 | 480 | 98.1 | Minus |
| CG5725-PA | 1260 | fbl-RA | 318..423 | 958..853 | 480 | 98.1 | Minus |
| CG5725-PC | 1206 | fbl-RC | 264..369 | 958..853 | 480 | 98.1 | Minus |
| CG5725-PE | 1539 | fbl-RE | 597..702 | 958..853 | 480 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fbl-RG | 2352 | CG5725-RG | 679..1621 | 958..17 | 4660 | 99.7 | Minus |
| fbl-RF | 1370 | CG5725-RF | 156..1098 | 958..17 | 4660 | 99.7 | Minus |
| fbl-RE | 2386 | CG5725-RE | 713..1655 | 958..17 | 4660 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20390885..20391182 | 314..17 | 1490 | 100 | Minus |
| 3L | 28110227 | 3L | 20390002..20390208 | 958..753 | 955 | 98.6 | Minus |
| 3L | 28110227 | 3L | 20390456..20390634 | 628..450 | 895 | 100 | Minus |
| 3L | 28110227 | 3L | 20390688..20390827 | 451..312 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 20390268..20390393 | 752..627 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:34:09 has no hits.
BS05639.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:28 Download gff for
BS05639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5725-PC | 256..1206 | 17..967 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:17 Download gff for
BS05639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5725-PB | 304..1254 | 17..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:57 Download gff for
BS05639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RE | 705..1660 | 12..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:59 Download gff for
BS05639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RE | 705..1660 | 12..967 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:59 Download gff for
BS05639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20389994..20390208 | 753..967 | 97 | -> | Minus |
| 3L | 20390268..20390393 | 627..752 | 100 | -> | Minus |
| 3L | 20390458..20390634 | 450..626 | 100 | -> | Minus |
| 3L | 20390690..20390825 | 314..449 | 100 | -> | Minus |
| 3L | 20390886..20391187 | 12..313 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:57 Download gff for
BS05639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20383094..20383308 | 753..967 | 97 | -> | Minus |
| arm_3L | 20383368..20383493 | 627..752 | 100 | -> | Minus |
| arm_3L | 20383558..20383734 | 450..626 | 100 | -> | Minus |
| arm_3L | 20383790..20383925 | 314..449 | 100 | -> | Minus |
| arm_3L | 20383986..20384287 | 12..313 | 99 | | Minus |
BS05639.5prime Sequence
909 bp (797 high quality bases) assembled on 2005-12-02
> BS05639.5prime
GAAGTTATCAGTCGACATGACGGAGGACGAACAGATTAACCTGCGCAATC
AGTTGGCGAGGGCGATGCCATGGTTTGGCATGGACATCGGCGGAACCCTC
ACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAGGA
TCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAACT
CGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACAAT
GTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAGAC
CACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGCCG
AGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCGAG
CAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAGCT
GGACACGCTCATCAAAGGCATTCTCTTCGCCGATCTGCATAATCGCACGG
AGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGCAG
CAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGATC
CGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGATTT
CGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTACTC
ACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGTGA
CAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTACN
ACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTNCAGCTTTGGCCAGATG
CATCTCAACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGCCNACGC
CACTCTGGT
BS05639.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5725-PB | 1254 | fbl-RB | 1..893 | 17..909 | 4383 | 99.5 | Plus |
| CG5725-PA | 1260 | fbl-RA | 52..899 | 62..909 | 4158 | 99.5 | Plus |
| CG5725-PE | 1539 | fbl-RE | 332..1178 | 63..909 | 4153 | 99.5 | Plus |
| CG5725-PD | 1206 | fbl-RD | 1..845 | 65..909 | 4143 | 99.5 | Plus |
| CG5725-PC | 1206 | fbl-RC | 1..845 | 65..909 | 4143 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fbl-RB | 1910 | CG5725-RB | 384..1277 | 16..909 | 4422 | 99.6 | Plus |
| fbl-RC | 2093 | CG5725-RC | 153..1001 | 61..909 | 4197 | 99.5 | Plus |
| fbl-RA | 1866 | CG5725-RA | 382..1233 | 58..909 | 4197 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20389913..20390208 | 239..534 | 1480 | 100 | Plus |
| 3L | 28110227 | 3L | 20388668..20388847 | 62..241 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 20390456..20390630 | 659..833 | 864 | 99.4 | Plus |
| 3L | 28110227 | 3L | 20390268..20390393 | 535..660 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 20390688..20390761 | 836..909 | 359 | 98.6 | Plus |
| 3L | 28110227 | 3L | 20384812..20384858 | 16..62 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:18:22 has no hits.
BS05639.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:29 Download gff for
BS05639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5725-PB | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:19 Download gff for
BS05639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5725-PB | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:34 Download gff for
BS05639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RB | 380..1277 | 12..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:50:33 Download gff for
BS05639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RB | 380..1277 | 12..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:50:33 Download gff for
BS05639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20390268..20390393 | 535..660 | 100 | -> | Plus |
| 3L | 20390458..20390634 | 661..837 | 98 | -> | Plus |
| 3L | 20389916..20390208 | 242..534 | 100 | -> | Plus |
| 3L | 20390690..20390761 | 838..909 | 98 | | Plus |
| 3L | 20384808..20384858 | 12..62 | 96 | -> | Plus |
| 3L | 20388669..20388847 | 63..241 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:34 Download gff for
BS05639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20377908..20377958 | 12..62 | 96 | -> | Plus |
| arm_3L | 20381769..20381947 | 63..241 | 100 | -> | Plus |
| arm_3L | 20383016..20383308 | 242..534 | 100 | -> | Plus |
| arm_3L | 20383368..20383493 | 535..660 | 100 | -> | Plus |
| arm_3L | 20383558..20383734 | 661..837 | 98 | -> | Plus |
| arm_3L | 20383790..20383861 | 838..909 | 98 | | Plus |
BS05639.complete Sequence
1286 bp (1286 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635183
> BS05639.complete
GAAGTTATCAGTCGACATGACGGAGGACGAACAGATTAACCTGCGCAATC
AGTTGGCGAGGGCGATGCCATGGTTTGGCATGGACATCGGCGGAACCCTC
ACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAGGA
TCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAACT
CGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACAAT
GTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAGAC
CACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGCCG
AGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCGAG
CAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAGCT
GGACACGCTCATCAAAGGCATTCTCTTCGCCGATCTGCATAATCGCACGG
AGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGCAG
CAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGATC
CGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGATTT
CGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTACTC
ACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGTGA
CAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTACA
ACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGATG
CATCTCAACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGCCAACGC
CACTCTGGTCACCATAACGAATAATATCGGCTCCATAGCAAGGATGTGCG
CGCTGAATGAGAAGATCGATAGGGTCGTCTTTGTGGGCAACTTTCTGCGA
GTTAACCCCATTTCCATGAAGCTGCTGGCGTACGCAATGGAGTTCTGGTC
CAATGGCACAATGAAGGGTCTTTTCCTGGAGCACGAGGGATACTTTGGGG
CTCTGGGTTGCCTGCTGCAGTTCAACGGCGAGCTGGCAGCCGCCCTTAAC
GACGGAGTGGAGCATTCAATCCACACTGAATCCGATTCAGCAAGCGAAGC
AGCACAGACATCTTCTACGGCGGACGAGCCACCAGAAAAGGCGCCCACAA
GCAAACACTCCACTAGATAGAAGCTTTCTAGACCAT
BS05639.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fbl-RB | 1254 | CG5725-PB | 1..1254 | 17..1270 | 6270 | 100 | Plus |
| fbl-RA | 1260 | CG5725-PA | 48..1260 | 58..1270 | 6050 | 99.9 | Plus |
| fbl-RG | 1287 | CG5725-PG | 79..1287 | 62..1270 | 6045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fbl-RB | 1910 | CG5725-RB | 384..1638 | 16..1270 | 6275 | 100 | Plus |
| fbl-RC | 2093 | CG5725-RC | 153..1362 | 61..1270 | 6050 | 100 | Plus |
| fbl-RA | 1866 | CG5725-RA | 382..1594 | 58..1270 | 6050 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20390885..20391182 | 973..1270 | 1490 | 100 | Plus |
| 3L | 28110227 | 3L | 20389913..20390208 | 239..534 | 1480 | 100 | Plus |
| 3L | 28110227 | 3L | 20388668..20388847 | 62..241 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 20390456..20390634 | 659..837 | 895 | 100 | Plus |
| 3L | 28110227 | 3L | 20390688..20390827 | 836..975 | 700 | 100 | Plus |
| 3L | 28110227 | 3L | 20390268..20390393 | 535..660 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 20384812..20384858 | 16..62 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:33:30 has no hits.
BS05639.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:06 Download gff for
BS05639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RB | 1..1254 | 17..1270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:56 Download gff for
BS05639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RB | 378..1641 | 12..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:23 Download gff for
BS05639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RB | 385..1638 | 17..1270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:06 Download gff for
BS05639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RB | 378..1641 | 12..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:14 Download gff for
BS05639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RB | 385..1638 | 17..1270 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:14 Download gff for
BS05639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20390886..20391182 | 974..1270 | 100 | | Plus |
| 3L | 20384813..20384858 | 17..62 | 100 | -> | Plus |
| 3L | 20388669..20388847 | 63..241 | 100 | -> | Plus |
| 3L | 20389916..20390208 | 242..534 | 100 | -> | Plus |
| 3L | 20390268..20390393 | 535..660 | 100 | -> | Plus |
| 3L | 20390458..20390634 | 661..837 | 100 | -> | Plus |
| 3L | 20390690..20390825 | 838..973 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:23 Download gff for
BS05639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20383986..20384282 | 974..1270 | 100 | | Plus |
| arm_3L | 20383016..20383308 | 242..534 | 100 | -> | Plus |
| arm_3L | 20377913..20377958 | 17..62 | 100 | -> | Plus |
| arm_3L | 20381769..20381947 | 63..241 | 100 | -> | Plus |
| arm_3L | 20383368..20383493 | 535..660 | 100 | -> | Plus |
| arm_3L | 20383558..20383734 | 661..837 | 100 | -> | Plus |
| arm_3L | 20383790..20383925 | 838..973 | 100 | -> | Plus |
BS05639.pep Sequence
Translation from 16 to 1269
> BS05639.pep
MTEDEQINLRNQLARAMPWFGMDIGGTLTKLVYFEPKDITPDEQDREAGI
LRNIRRYLTKNSAYGKTGHRDTHLQMDNVEIRKRRGSLHFIRFQTTDMGN
FLSLAKQKGMAELVTTVCATGGGAFKFEQDFRDQVNMKLAKFDELDTLIK
GILFADLHNRTECYYYENARDILKSEKQQFNFSQPFPFILVNVGSGVSIL
AVYGPDNYKRISGTSLGGGTFLGLCCLLTGCTSFEEAIQLATKGDNRKVD
KLVKDIYGGDYNRFGLPGDLVASSFGQMHLNDKRVSVSREDLANATLVTI
TNNIGSIARMCALNEKIDRVVFVGNFLRVNPISMKLLAYAMEFWSNGTMK
GLFLEHEGYFGALGCLLQFNGELAAALNDGVEHSIHTESDSASEAAQTSS
TADEPPEKAPTSKHSTR*
BS05639.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fbl-PB | 417 | CG5725-PB | 1..417 | 1..417 | 2171 | 100 | Plus |
| fbl-PA | 419 | CG5725-PA | 18..419 | 16..417 | 2097 | 100 | Plus |
| fbl-PG | 428 | CG5725-PG | 27..428 | 16..417 | 2097 | 100 | Plus |
| fbl-PC | 401 | CG5725-PC | 1..401 | 17..417 | 2093 | 100 | Plus |
| fbl-PD | 401 | CG5725-PD | 1..401 | 17..417 | 2093 | 100 | Plus |
