Clone BS05640 Report

Search the DGRC for BS05640

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptHmgD-RA
Protein status:BS05640.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05640.5prime Sequence

369 bp (368 high quality bases) assembled on 2005-12-02

> BS05640.5prime
GAAGTTATCAGTCGACATGTCTGATAAGCCAAAACGCCCACTCTCCGCCT
ACATGCTGTGGCTCAACAGTGCCCGCGAGTCGATCAAGCGCGAGAATCCC
GGCATCAAGGTCACCGAGGTGGCCAAGCGCGGTGGTGAATTATGGAGGGC
AATGAAGGACAAGTCTGAGTGGGAGGCCAAGGCTGCTAAGGCCAAGGACG
ACTACGATCGGGCGGTCAAGGAGTTCGAGGCCAATGGTGGCAGCAGTGCT
GCCAACGGTGGTGGAGCCAAGAAGCGCGCGAAACCAGCGAAAAAGGTGGC
GAAGAAGAGCAAGAAGGAGGAGTCCGACGAGGACGACGATGATGAGAGCG
AGTAGAAGCTTTCTAGACC

BS05640.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17950-PA 339 HmgD-RA 1..339 17..355 1695 100 Plus
CG17950-PB 339 HmgD-RB 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
HmgD-RD 1495 CG17950-RD 670..1009 17..356 1700 100 Plus
HmgD-RC 967 CG17950-RC 142..481 17..356 1700 100 Plus
HmgD-RB 1279 CG17950-RB 94..433 17..356 1700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21715692..21715881 167..356 950 100 Plus
2R 25286936 2R 21715468..21715618 17..167 755 100 Plus
2R 25286936 2R 21698391..21698510 163..44 195 77.5 Minus
Blast to na_te.dros performed on 2015-02-11 16:21:40 has no hits.

BS05640.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:31 Download gff for BS05640.5prime
Subject Subject Range Query Range Percent Splice Strand
HmgD-PB 1..339 17..355 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:22 Download gff for BS05640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17950-PB 1..339 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:37:11 Download gff for BS05640.5prime
Subject Subject Range Query Range Percent Splice Strand
HmgD-RA 86..440 9..364 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:10 Download gff for BS05640.5prime
Subject Subject Range Query Range Percent Splice Strand
HmgD-RB 85..439 9..364 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:10 Download gff for BS05640.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21715459..21715617 9..166 97 -> Plus
2R 21715692..21715887 167..364 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:37:11 Download gff for BS05640.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17602964..17603122 9..166 97 -> Plus
arm_2R 17603197..17603392 167..364 97   Plus

BS05640.3prime Sequence

369 bp (368 high quality bases) assembled on 2005-12-02

> BS05640.3prime
ATGGTCTAGAAAGCTTCTACTCGCTCTCATCATCGTCGTCCTCGTCGGAC
TCCTCCTTCTTGCTCTTCTTCGCCACCTTTTTCGCTGGTTTCGCGCGCTT
CTTGGCTCCACCACCGTTGGCAGCACTGCTGCCACCATTGGCCTCGAACT
CCTTGACCGCCCGATCGTAGTCGTCCTTGGCCTTAGCAGCCTTGGCCTCC
CACTCAGACTTGTCCTTCATTGCCCTCCATAATTCACCACCGCGCTTGGC
CACCTCGGTGACCTTGATGCCGGGATTCTCGCGCTTGATCGACTCGCGGG
CACTGTTGAGCCACAGCATGTAGGCGGAGAGTGGGCGTTTTGGCTTATCA
GACATGTCGACTGATAACT

BS05640.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17950-PA 339 HmgD-RA 1..339 355..17 1695 100 Minus
CG17950-PB 339 HmgD-RB 1..339 355..17 1695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
HmgD-RD 1495 CG17950-RD 670..1009 355..16 1700 100 Minus
HmgD-RC 967 CG17950-RC 142..481 355..16 1700 100 Minus
HmgD-RB 1279 CG17950-RB 94..433 355..16 1700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21715692..21715881 205..16 950 100 Minus
2R 25286936 2R 21715468..21715618 355..205 755 100 Minus
2R 25286936 2R 21698391..21698510 209..328 195 77.5 Plus
Blast to na_te.dros performed on 2015-02-03 13:40:42 has no hits.

BS05640.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:30 Download gff for BS05640.3prime
Subject Subject Range Query Range Percent Splice Strand
HmgD-PB 1..339 17..355 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:20 Download gff for BS05640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17950-PB 1..339 17..355 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:02:43 Download gff for BS05640.3prime
Subject Subject Range Query Range Percent Splice Strand
HmgD-RA 86..440 8..363 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:51:26 Download gff for BS05640.3prime
Subject Subject Range Query Range Percent Splice Strand
HmgD-RB 85..439 8..363 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:51:26 Download gff for BS05640.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21715459..21715617 206..363 97 -> Minus
2R 21715692..21715887 8..205 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:02:43 Download gff for BS05640.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17602964..17603122 206..363 97 -> Minus
arm_2R 17603197..17603392 8..205 97   Minus

BS05640.complete Sequence

371 bp (371 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635184

> BS05640.complete
GAAGTTATCAGTCGACATGTCTGATAAGCCAAAACGCCCACTCTCCGCCT
ACATGCTGTGGCTCAACAGTGCCCGCGAGTCGATCAAGCGCGAGAATCCC
GGCATCAAGGTCACCGAGGTGGCCAAGCGCGGTGGTGAATTATGGAGGGC
AATGAAGGACAAGTCTGAGTGGGAGGCCAAGGCTGCTAAGGCCAAGGACG
ACTACGATCGGGCGGTCAAGGAGTTCGAGGCCAATGGTGGCAGCAGTGCT
GCCAACGGTGGTGGAGCCAAGAAGCGCGCGAAACCAGCGAAAAAGGTGGC
GAAGAAGAGCAAGAAGGAGGAGTCCGACGAGGACGACGATGATGAGAGCG
AGTAGAAGCTTTCTAGACCAT

BS05640.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
HmgD-RD 339 CG17950-PD 1..339 17..355 1695 100 Plus
HmgD-RC 339 CG17950-PC 1..339 17..355 1695 100 Plus
HmgD-RB 339 CG17950-PB 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
HmgD-RD 1495 CG17950-RD 670..1009 17..356 1700 100 Plus
HmgD-RC 967 CG17950-RC 142..481 17..356 1700 100 Plus
HmgD-RB 1279 CG17950-RB 94..433 17..356 1700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21715692..21715881 167..356 950 100 Plus
2R 25286936 2R 21715468..21715618 17..167 755 100 Plus
2R 25286936 2R 21698391..21698510 163..44 195 77.5 Minus
Blast to na_te.dros performed on 2014-11-27 13:01:29 has no hits.

BS05640.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:05 Download gff for BS05640.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RB 1..339 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:05 Download gff for BS05640.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RB 318..672 9..364 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:43:41 Download gff for BS05640.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RA 95..433 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:05 Download gff for BS05640.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RB 318..672 9..364 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:30 Download gff for BS05640.complete
Subject Subject Range Query Range Percent Splice Strand
HmgD-RB 94..432 17..355 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:30 Download gff for BS05640.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21715468..21715617 17..166 100 -> Plus
2R 21715692..21715880 167..355 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:43:41 Download gff for BS05640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17602973..17603122 17..166 100 -> Plus
arm_2R 17603197..17603385 167..355 100   Plus

BS05640.pep Sequence

Translation from 16 to 354

> BS05640.pep
MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKS
EWEAKAAKAKDDYDRAVKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKK
EESDEDDDDESE*

BS05640.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
HmgD-PD 112 CG17950-PD 1..112 1..112 577 100 Plus
HmgD-PC 112 CG17950-PC 1..112 1..112 577 100 Plus
HmgD-PB 112 CG17950-PB 1..112 1..112 577 100 Plus
HmgD-PA 112 CG17950-PA 1..112 1..112 577 100 Plus
HmgZ-PD 111 CG17921-PD 4..111 3..112 382 64.9 Plus