Clone Sequence Records
BS05640.5prime Sequence
369 bp (368 high quality bases) assembled on 2005-12-02
> BS05640.5prime
GAAGTTATCAGTCGACATGTCTGATAAGCCAAAACGCCCACTCTCCGCCT
ACATGCTGTGGCTCAACAGTGCCCGCGAGTCGATCAAGCGCGAGAATCCC
GGCATCAAGGTCACCGAGGTGGCCAAGCGCGGTGGTGAATTATGGAGGGC
AATGAAGGACAAGTCTGAGTGGGAGGCCAAGGCTGCTAAGGCCAAGGACG
ACTACGATCGGGCGGTCAAGGAGTTCGAGGCCAATGGTGGCAGCAGTGCT
GCCAACGGTGGTGGAGCCAAGAAGCGCGCGAAACCAGCGAAAAAGGTGGC
GAAGAAGAGCAAGAAGGAGGAGTCCGACGAGGACGACGATGATGAGAGCG
AGTAGAAGCTTTCTAGACC
BS05640.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17950-PA | 339 | HmgD-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
CG17950-PB | 339 | HmgD-RB | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgD-RD | 1495 | CG17950-RD | 670..1009 | 17..356 | 1700 | 100 | Plus |
HmgD-RC | 967 | CG17950-RC | 142..481 | 17..356 | 1700 | 100 | Plus |
HmgD-RB | 1279 | CG17950-RB | 94..433 | 17..356 | 1700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21715692..21715881 | 167..356 | 950 | 100 | Plus |
2R | 25286936 | 2R | 21715468..21715618 | 17..167 | 755 | 100 | Plus |
2R | 25286936 | 2R | 21698391..21698510 | 163..44 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:21:40 has no hits.
BS05640.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:31 Download gff for
BS05640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-PB | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:22 Download gff for
BS05640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17950-PB | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:37:11 Download gff for
BS05640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RA | 86..440 | 9..364 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:10 Download gff for
BS05640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RB | 85..439 | 9..364 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:10 Download gff for
BS05640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21715459..21715617 | 9..166 | 97 | -> | Plus |
2R | 21715692..21715887 | 167..364 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:37:11 Download gff for
BS05640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17602964..17603122 | 9..166 | 97 | -> | Plus |
arm_2R | 17603197..17603392 | 167..364 | 97 | | Plus |
BS05640.3prime Sequence
369 bp (368 high quality bases) assembled on 2005-12-02
> BS05640.3prime
ATGGTCTAGAAAGCTTCTACTCGCTCTCATCATCGTCGTCCTCGTCGGAC
TCCTCCTTCTTGCTCTTCTTCGCCACCTTTTTCGCTGGTTTCGCGCGCTT
CTTGGCTCCACCACCGTTGGCAGCACTGCTGCCACCATTGGCCTCGAACT
CCTTGACCGCCCGATCGTAGTCGTCCTTGGCCTTAGCAGCCTTGGCCTCC
CACTCAGACTTGTCCTTCATTGCCCTCCATAATTCACCACCGCGCTTGGC
CACCTCGGTGACCTTGATGCCGGGATTCTCGCGCTTGATCGACTCGCGGG
CACTGTTGAGCCACAGCATGTAGGCGGAGAGTGGGCGTTTTGGCTTATCA
GACATGTCGACTGATAACT
BS05640.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17950-PA | 339 | HmgD-RA | 1..339 | 355..17 | 1695 | 100 | Minus |
CG17950-PB | 339 | HmgD-RB | 1..339 | 355..17 | 1695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgD-RD | 1495 | CG17950-RD | 670..1009 | 355..16 | 1700 | 100 | Minus |
HmgD-RC | 967 | CG17950-RC | 142..481 | 355..16 | 1700 | 100 | Minus |
HmgD-RB | 1279 | CG17950-RB | 94..433 | 355..16 | 1700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:40:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21715692..21715881 | 205..16 | 950 | 100 | Minus |
2R | 25286936 | 2R | 21715468..21715618 | 355..205 | 755 | 100 | Minus |
2R | 25286936 | 2R | 21698391..21698510 | 209..328 | 195 | 77.5 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:40:42 has no hits.
BS05640.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:30 Download gff for
BS05640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-PB | 1..339 | 17..355 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:20 Download gff for
BS05640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17950-PB | 1..339 | 17..355 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:02:43 Download gff for
BS05640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RA | 86..440 | 8..363 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:51:26 Download gff for
BS05640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RB | 85..439 | 8..363 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:51:26 Download gff for
BS05640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21715459..21715617 | 206..363 | 97 | -> | Minus |
2R | 21715692..21715887 | 8..205 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:02:43 Download gff for
BS05640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17602964..17603122 | 206..363 | 97 | -> | Minus |
arm_2R | 17603197..17603392 | 8..205 | 97 | | Minus |
BS05640.complete Sequence
371 bp (371 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635184
> BS05640.complete
GAAGTTATCAGTCGACATGTCTGATAAGCCAAAACGCCCACTCTCCGCCT
ACATGCTGTGGCTCAACAGTGCCCGCGAGTCGATCAAGCGCGAGAATCCC
GGCATCAAGGTCACCGAGGTGGCCAAGCGCGGTGGTGAATTATGGAGGGC
AATGAAGGACAAGTCTGAGTGGGAGGCCAAGGCTGCTAAGGCCAAGGACG
ACTACGATCGGGCGGTCAAGGAGTTCGAGGCCAATGGTGGCAGCAGTGCT
GCCAACGGTGGTGGAGCCAAGAAGCGCGCGAAACCAGCGAAAAAGGTGGC
GAAGAAGAGCAAGAAGGAGGAGTCCGACGAGGACGACGATGATGAGAGCG
AGTAGAAGCTTTCTAGACCAT
BS05640.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgD-RD | 339 | CG17950-PD | 1..339 | 17..355 | 1695 | 100 | Plus |
HmgD-RC | 339 | CG17950-PC | 1..339 | 17..355 | 1695 | 100 | Plus |
HmgD-RB | 339 | CG17950-PB | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgD-RD | 1495 | CG17950-RD | 670..1009 | 17..356 | 1700 | 100 | Plus |
HmgD-RC | 967 | CG17950-RC | 142..481 | 17..356 | 1700 | 100 | Plus |
HmgD-RB | 1279 | CG17950-RB | 94..433 | 17..356 | 1700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21715692..21715881 | 167..356 | 950 | 100 | Plus |
2R | 25286936 | 2R | 21715468..21715618 | 17..167 | 755 | 100 | Plus |
2R | 25286936 | 2R | 21698391..21698510 | 163..44 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:01:29 has no hits.
BS05640.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:05 Download gff for
BS05640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RB | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:05 Download gff for
BS05640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RB | 318..672 | 9..364 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:43:41 Download gff for
BS05640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RA | 95..433 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:05 Download gff for
BS05640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RB | 318..672 | 9..364 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:30 Download gff for
BS05640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RB | 94..432 | 17..355 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:30 Download gff for
BS05640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21715468..21715617 | 17..166 | 100 | -> | Plus |
2R | 21715692..21715880 | 167..355 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:43:41 Download gff for
BS05640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17602973..17603122 | 17..166 | 100 | -> | Plus |
arm_2R | 17603197..17603385 | 167..355 | 100 | | Plus |
BS05640.pep Sequence
Translation from 16 to 354
> BS05640.pep
MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKS
EWEAKAAKAKDDYDRAVKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKK
EESDEDDDDESE*
BS05640.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgD-PD | 112 | CG17950-PD | 1..112 | 1..112 | 577 | 100 | Plus |
HmgD-PC | 112 | CG17950-PC | 1..112 | 1..112 | 577 | 100 | Plus |
HmgD-PB | 112 | CG17950-PB | 1..112 | 1..112 | 577 | 100 | Plus |
HmgD-PA | 112 | CG17950-PA | 1..112 | 1..112 | 577 | 100 | Plus |
HmgZ-PD | 111 | CG17921-PD | 4..111 | 3..112 | 382 | 64.9 | Plus |