Clone BS05641 Report

Search the DGRC for BS05641

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptProsbeta7-RA
Protein status:BS05641.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05641.3prime Sequence

836 bp (798 high quality bases) assembled on 2005-12-02

> BS05641.3prime
ATGGTCTAGAAAGCTTCTAGTATCCCTTTATGGTTTCGGCGAATGTCCAG
TTTTCGTTAACTTGGAAGGGCCCCTCCACGCCGCATCCGTTGACGCTGCA
CACGCCCACAGTGTATTGGGAAATATTACGAGTATCGCGGTAGTAAAGCA
CCTCCATGCATGTGCGGATCAGTTCGGAAGCTTCTACGGCGGTAAAGTCC
CTGTCCTTGGGCTTCTTCTCACGGACCAGCGGAACGGCCAAATGGCGGGC
AAAACCAGTGGCCACCACGTAGTCCTCGTAGGATCGTCCACGGAGATCCA
CGTTGGCCAGGTACGGAGTCCCCTCGTTGTCCACGCCGCCGACAACCACG
TCAATGTAGAGGGGGTTCATCCGCGAACGACGGTTGTAGAGCACACGGGT
CATCCAACTGGCCAAGGACTTGGGCTTCATCTCGATGTTGTCGTCGCAGC
ACTGGTCCTCGATCATCTTCTGGTCGATGTTGCGCTTGATGGACTGGATG
TCAGCGAAGTCGCCGCTCCCGCCGAGCAGGATGTTCTTGTTGACCTTAAA
GACGCGCTCAATGTTTTGGTAGCGGGCCATGGATCCGTAAGACACCAGGG
TGTCGGCGGCCAGCATCACTCCTGAATCATAGCGAATGCCAAGCACGGAA
GTGCCCGTGGTGCTGGAAGCAGTGCTGTGCTTGGTTCCATAGGGTCCCAT
TGTGGTCAGCTCCCGCGGTAGCTGCTGGACCGGCGTCTGTCCGCCCGTGA
AGTTGTAGAACTCGCCGGGAGCGGGTCCGTTCTGCCACATGGGCTGCGCT
AGGCTGTTGTAGTTGTTCACATGTCGACTGATAACT

BS05641.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12000-PA 807 CG12000-RA 5..807 819..17 4015 100 Minus
CG12000-PB 807 CG12000-RB 5..807 819..17 4015 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta7-RB 1026 CG12000-RB 105..908 819..16 4020 100 Minus
Prosbeta7-RA 1215 CG12000-RA 294..1097 819..16 4020 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5357355..5357860 170..675 2515 99.8 Plus
3R 32079331 3R 5357130..5357284 16..170 775 100 Plus
3R 32079331 3R 5357924..5358071 672..819 740 100 Plus
Blast to na_te.dros performed 2015-02-10 22:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4427..4500 489..420 109 63.5 Minus

BS05641.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:32 Download gff for BS05641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12000-PB 1..807 17..822 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:23 Download gff for BS05641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12000-PB 1..807 17..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:21:21 Download gff for BS05641.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 289..1099 13..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:29 Download gff for BS05641.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 289..1099 13..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:29 Download gff for BS05641.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5357128..5357283 13..169 99 <- Plus
3R 5357355..5357856 170..671 100 <- Plus
3R 5357924..5358076 672..823 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:21:21 Download gff for BS05641.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1183646..1183798 672..823 99   Plus
arm_3R 1182850..1183005 13..169 99 <- Plus
arm_3R 1183077..1183578 170..671 100 <- Plus

BS05641.5prime Sequence

821 bp (729 high quality bases) assembled on 2005-11-29

> BS05641.5prime
GAAGTTATCAGTCGACATGTTGAACAACTACAACAGCCTAGCGCAGCCCA
TGTGGCAGAACGGACCCGCTCCCGGCGAGTTCTACAACTTCACGGGCGGA
CAGACGCCGGTCCAGCAGCTACCGCGGGAGCTGACCACAATGGGACCCTA
TGGAACCAAGCACAGCACTGCTTCCAGCACCACGGGCACTTCCGTGCTTG
GCATTCGCTATGATTCAGGAGTGATGCTGGCCGCCGACACCCTGGTGTCT
TACGGATCCATGGCCCGCTACCAAAACATTGAGCGCGTCTTTAAGGTCAA
CAAGAACATCCTGCTCGGCGGGAGCGGCGACTTCGCTGACATCCAGTCCA
TCAAGCGCAACATCGACCAGAAGATGATCGAGGACCAGTGCTGCGACGAC
AACATCGAGATGAAGCCCAAGTCCTTGGCCAGTTGGATGACCCGTGTGCT
CTACAACCGTCGTTCGCGGATGAACCCCCTCTACATTGACGTGGTTGTCG
GCGGCGTGGACAACGAGGGGACTCCGTACCTGGCCAACGTGGATCTCCGT
GGACGATCCTACGAGGACTACGTGGTGGCCACTGGTTTTGCCCGCCATTT
GGCCGTTCCGCTGGTCCGTGAGAAGAAGCCCAAGGACAGGGACTTTACCG
CCGTAGAAGCTTCCGAACTGATCCGCACATGCATGGAGGTGCTTTACTAC
CGCGATACTCGTAATATTTCCCAATACACTGTGGGCGTGTGCAGCGTCAA
CGGATGCGGCGTGGAGGGGCCCTTTCCAGTTAACGAAAACTGGACATTCG
CCGAAACCCATAAGGGATACT

BS05641.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12000-PA 807 CG12000-RA 1..792 17..808 3910 99.7 Plus
CG12000-PB 807 CG12000-RB 1..792 17..808 3910 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta7-RB 1026 CG12000-RB 100..905 16..821 3955 99.5 Plus
Prosbeta7-RA 1215 CG12000-RA 289..1094 16..821 3955 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5357355..5357860 670..165 2515 99.8 Minus
3R 32079331 3R 5357924..5358076 168..16 765 100 Minus
3R 32079331 3R 5357133..5357284 821..670 685 96.7 Minus
Blast to na_te.dros performed 2015-02-12 06:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4427..4500 351..420 109 63.5 Plus

BS05641.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:33 Download gff for BS05641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12000-PB 1..805 17..821 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:25 Download gff for BS05641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12000-PB 1..805 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:36:26 Download gff for BS05641.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 289..1094 16..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:51 Download gff for BS05641.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 289..1094 16..821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:51 Download gff for BS05641.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5357133..5357283 671..821 97 <- Minus
3R 5357355..5357856 169..670 100 <- Minus
3R 5357924..5358076 16..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:36:26 Download gff for BS05641.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1182855..1183005 671..821 97 <- Minus
arm_3R 1183077..1183578 169..670 100 <- Minus
arm_3R 1183646..1183798 16..168 100   Minus

BS05641.complete Sequence

839 bp (839 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635185

> BS05641.complete
GAAGTTATCAGTCGACATGTTGAACAACTACAACAGCCTAGCGCAGCCCA
TGTGGCAGAACGGACCCGCTCCCGGCGAGTTCTACAACTTCACGGGCGGA
CAGACGCCGGTCCAGCAGCTACCGCGGGAGCTGACCACAATGGGACCCTA
TGGAACCAAGCACAGCACTGCTTCCAGCACCACGGGCACTTCCGTGCTTG
GCATTCGCTATGATTCAGGAGTGATGCTGGCCGCCGACACCCTGGTGTCT
TACGGATCCATGGCCCGCTACCAAAACATTGAGCGCGTCTTTAAGGTCAA
CAAGAACATCCTGCTCGGCGGGAGCGGCGACTTCGCTGACATCCAGTCCA
TCAAGCGCAACATCGACCAGAAGATGATCGAGGACCAGTGCTGCGACGAC
AACATCGAGATGAAGCCCAAGTCCTTGGCCAGTTGGATGACCCGTGTGCT
CTACAACCGTCGTTCGCGGATGAACCCCCTCTACATTGACGTGGTTGTCG
GCGGCGTGGACAACGAGGGGACTCCGTACCTGGCCAACGTGGATCTCCGT
GGACGATCCTACGAGGACTACGTGGTGGCCACTGGTTTTGCCCGCCATTT
GGCCGTTCCGCTGGTCCGTGAGAAGAAGCCCAAGGACAGGGACTTTACCG
CCGTAGAAGCTTCCGAACTGATCCGCACATGCATGGAGGTGCTTTACTAC
CGCGATACTCGTAATATTTCCCAATACACTGTGGGCGTGTGCAGCGTCAA
CGGATGCGGCGTGGAGGGGCCCTTCCAAGTTAACGAAAACTGGACATTCG
CCGAAACCATAAAGGGATACTAGAAGCTTTCTAGACCAT

BS05641.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta7-RB 807 CG12000-PB 1..807 17..823 4035 100 Plus
Prosbeta7-RA 807 CG12000-PA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta7-RB 1026 CG12000-RB 100..908 16..824 4045 100 Plus
Prosbeta7-RA 1215 CG12000-RA 289..1097 16..824 4045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5357355..5357860 670..165 2515 99.8 Minus
3R 32079331 3R 5357130..5357284 824..670 775 100 Minus
3R 32079331 3R 5357924..5358076 168..16 765 100 Minus
Blast to na_te.dros performed 2014-11-28 00:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4427..4500 351..420 109 63.5 Plus

BS05641.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:07 Download gff for BS05641.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RB 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:57 Download gff for BS05641.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RB 98..908 16..827 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:48 Download gff for BS05641.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 295..1096 22..823 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:07 Download gff for BS05641.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RB 98..908 16..827 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:13 Download gff for BS05641.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 295..1096 22..823 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:13 Download gff for BS05641.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5357131..5357283 671..823 100 <- Minus
3R 5357355..5357856 169..670 100 <- Minus
3R 5357924..5358070 22..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:48 Download gff for BS05641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1182853..1183005 671..823 100 <- Minus
arm_3R 1183077..1183578 169..670 100 <- Minus
arm_3R 1183646..1183792 22..168 100   Minus

BS05641.pep Sequence

Translation from 16 to 822

> BS05641.pep
MLNNYNSLAQPMWQNGPAPGEFYNFTGGQTPVQQLPRELTTMGPYGTKHS
TASSTTGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILL
GGSGDFADIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWMTRVLYNRRS
RMNPLYIDVVVGGVDNEGTPYLANVDLRGRSYEDYVVATGFARHLAVPLV
REKKPKDRDFTAVEASELIRTCMEVLYYRDTRNISQYTVGVCSVNGCGVE
GPFQVNENWTFAETIKGY*

BS05641.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta7-PB 268 CG12000-PB 1..268 1..268 1417 100 Plus
Prosbeta7-PA 268 CG12000-PA 1..268 1..268 1417 100 Plus