Clone Sequence Records
BS05641.3prime Sequence
836 bp (798 high quality bases) assembled on 2005-12-02
> BS05641.3prime
ATGGTCTAGAAAGCTTCTAGTATCCCTTTATGGTTTCGGCGAATGTCCAG
TTTTCGTTAACTTGGAAGGGCCCCTCCACGCCGCATCCGTTGACGCTGCA
CACGCCCACAGTGTATTGGGAAATATTACGAGTATCGCGGTAGTAAAGCA
CCTCCATGCATGTGCGGATCAGTTCGGAAGCTTCTACGGCGGTAAAGTCC
CTGTCCTTGGGCTTCTTCTCACGGACCAGCGGAACGGCCAAATGGCGGGC
AAAACCAGTGGCCACCACGTAGTCCTCGTAGGATCGTCCACGGAGATCCA
CGTTGGCCAGGTACGGAGTCCCCTCGTTGTCCACGCCGCCGACAACCACG
TCAATGTAGAGGGGGTTCATCCGCGAACGACGGTTGTAGAGCACACGGGT
CATCCAACTGGCCAAGGACTTGGGCTTCATCTCGATGTTGTCGTCGCAGC
ACTGGTCCTCGATCATCTTCTGGTCGATGTTGCGCTTGATGGACTGGATG
TCAGCGAAGTCGCCGCTCCCGCCGAGCAGGATGTTCTTGTTGACCTTAAA
GACGCGCTCAATGTTTTGGTAGCGGGCCATGGATCCGTAAGACACCAGGG
TGTCGGCGGCCAGCATCACTCCTGAATCATAGCGAATGCCAAGCACGGAA
GTGCCCGTGGTGCTGGAAGCAGTGCTGTGCTTGGTTCCATAGGGTCCCAT
TGTGGTCAGCTCCCGCGGTAGCTGCTGGACCGGCGTCTGTCCGCCCGTGA
AGTTGTAGAACTCGCCGGGAGCGGGTCCGTTCTGCCACATGGGCTGCGCT
AGGCTGTTGTAGTTGTTCACATGTCGACTGATAACT
BS05641.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12000-PA | 807 | CG12000-RA | 5..807 | 819..17 | 4015 | 100 | Minus |
CG12000-PB | 807 | CG12000-RB | 5..807 | 819..17 | 4015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta7-RB | 1026 | CG12000-RB | 105..908 | 819..16 | 4020 | 100 | Minus |
Prosbeta7-RA | 1215 | CG12000-RA | 294..1097 | 819..16 | 4020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5357355..5357860 | 170..675 | 2515 | 99.8 | Plus |
3R | 32079331 | 3R | 5357130..5357284 | 16..170 | 775 | 100 | Plus |
3R | 32079331 | 3R | 5357924..5358071 | 672..819 | 740 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:02:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4427..4500 | 489..420 | 109 | 63.5 | Minus |
BS05641.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:32 Download gff for
BS05641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12000-PB | 1..807 | 17..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:23 Download gff for
BS05641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12000-PB | 1..807 | 17..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:21:21 Download gff for
BS05641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta7-RA | 289..1099 | 13..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:29 Download gff for
BS05641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta7-RA | 289..1099 | 13..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:29 Download gff for
BS05641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5357128..5357283 | 13..169 | 99 | <- | Plus |
3R | 5357355..5357856 | 170..671 | 100 | <- | Plus |
3R | 5357924..5358076 | 672..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:21:21 Download gff for
BS05641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1183646..1183798 | 672..823 | 99 | | Plus |
arm_3R | 1182850..1183005 | 13..169 | 99 | <- | Plus |
arm_3R | 1183077..1183578 | 170..671 | 100 | <- | Plus |
BS05641.5prime Sequence
821 bp (729 high quality bases) assembled on 2005-11-29
> BS05641.5prime
GAAGTTATCAGTCGACATGTTGAACAACTACAACAGCCTAGCGCAGCCCA
TGTGGCAGAACGGACCCGCTCCCGGCGAGTTCTACAACTTCACGGGCGGA
CAGACGCCGGTCCAGCAGCTACCGCGGGAGCTGACCACAATGGGACCCTA
TGGAACCAAGCACAGCACTGCTTCCAGCACCACGGGCACTTCCGTGCTTG
GCATTCGCTATGATTCAGGAGTGATGCTGGCCGCCGACACCCTGGTGTCT
TACGGATCCATGGCCCGCTACCAAAACATTGAGCGCGTCTTTAAGGTCAA
CAAGAACATCCTGCTCGGCGGGAGCGGCGACTTCGCTGACATCCAGTCCA
TCAAGCGCAACATCGACCAGAAGATGATCGAGGACCAGTGCTGCGACGAC
AACATCGAGATGAAGCCCAAGTCCTTGGCCAGTTGGATGACCCGTGTGCT
CTACAACCGTCGTTCGCGGATGAACCCCCTCTACATTGACGTGGTTGTCG
GCGGCGTGGACAACGAGGGGACTCCGTACCTGGCCAACGTGGATCTCCGT
GGACGATCCTACGAGGACTACGTGGTGGCCACTGGTTTTGCCCGCCATTT
GGCCGTTCCGCTGGTCCGTGAGAAGAAGCCCAAGGACAGGGACTTTACCG
CCGTAGAAGCTTCCGAACTGATCCGCACATGCATGGAGGTGCTTTACTAC
CGCGATACTCGTAATATTTCCCAATACACTGTGGGCGTGTGCAGCGTCAA
CGGATGCGGCGTGGAGGGGCCCTTTCCAGTTAACGAAAACTGGACATTCG
CCGAAACCCATAAGGGATACT
BS05641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12000-PA | 807 | CG12000-RA | 1..792 | 17..808 | 3910 | 99.7 | Plus |
CG12000-PB | 807 | CG12000-RB | 1..792 | 17..808 | 3910 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta7-RB | 1026 | CG12000-RB | 100..905 | 16..821 | 3955 | 99.5 | Plus |
Prosbeta7-RA | 1215 | CG12000-RA | 289..1094 | 16..821 | 3955 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5357355..5357860 | 670..165 | 2515 | 99.8 | Minus |
3R | 32079331 | 3R | 5357924..5358076 | 168..16 | 765 | 100 | Minus |
3R | 32079331 | 3R | 5357133..5357284 | 821..670 | 685 | 96.7 | Minus |
Blast to na_te.dros performed 2015-02-12 06:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4427..4500 | 351..420 | 109 | 63.5 | Plus |
BS05641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:33 Download gff for
BS05641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12000-PB | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:25 Download gff for
BS05641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12000-PB | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:36:26 Download gff for
BS05641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta7-RA | 289..1094 | 16..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:51 Download gff for
BS05641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta7-RA | 289..1094 | 16..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:51 Download gff for
BS05641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5357133..5357283 | 671..821 | 97 | <- | Minus |
3R | 5357355..5357856 | 169..670 | 100 | <- | Minus |
3R | 5357924..5358076 | 16..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:36:26 Download gff for
BS05641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1182855..1183005 | 671..821 | 97 | <- | Minus |
arm_3R | 1183077..1183578 | 169..670 | 100 | <- | Minus |
arm_3R | 1183646..1183798 | 16..168 | 100 | | Minus |
BS05641.complete Sequence
839 bp (839 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635185
> BS05641.complete
GAAGTTATCAGTCGACATGTTGAACAACTACAACAGCCTAGCGCAGCCCA
TGTGGCAGAACGGACCCGCTCCCGGCGAGTTCTACAACTTCACGGGCGGA
CAGACGCCGGTCCAGCAGCTACCGCGGGAGCTGACCACAATGGGACCCTA
TGGAACCAAGCACAGCACTGCTTCCAGCACCACGGGCACTTCCGTGCTTG
GCATTCGCTATGATTCAGGAGTGATGCTGGCCGCCGACACCCTGGTGTCT
TACGGATCCATGGCCCGCTACCAAAACATTGAGCGCGTCTTTAAGGTCAA
CAAGAACATCCTGCTCGGCGGGAGCGGCGACTTCGCTGACATCCAGTCCA
TCAAGCGCAACATCGACCAGAAGATGATCGAGGACCAGTGCTGCGACGAC
AACATCGAGATGAAGCCCAAGTCCTTGGCCAGTTGGATGACCCGTGTGCT
CTACAACCGTCGTTCGCGGATGAACCCCCTCTACATTGACGTGGTTGTCG
GCGGCGTGGACAACGAGGGGACTCCGTACCTGGCCAACGTGGATCTCCGT
GGACGATCCTACGAGGACTACGTGGTGGCCACTGGTTTTGCCCGCCATTT
GGCCGTTCCGCTGGTCCGTGAGAAGAAGCCCAAGGACAGGGACTTTACCG
CCGTAGAAGCTTCCGAACTGATCCGCACATGCATGGAGGTGCTTTACTAC
CGCGATACTCGTAATATTTCCCAATACACTGTGGGCGTGTGCAGCGTCAA
CGGATGCGGCGTGGAGGGGCCCTTCCAAGTTAACGAAAACTGGACATTCG
CCGAAACCATAAAGGGATACTAGAAGCTTTCTAGACCAT
BS05641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta7-RB | 807 | CG12000-PB | 1..807 | 17..823 | 4035 | 100 | Plus |
Prosbeta7-RA | 807 | CG12000-PA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta7-RB | 1026 | CG12000-RB | 100..908 | 16..824 | 4045 | 100 | Plus |
Prosbeta7-RA | 1215 | CG12000-RA | 289..1097 | 16..824 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5357355..5357860 | 670..165 | 2515 | 99.8 | Minus |
3R | 32079331 | 3R | 5357130..5357284 | 824..670 | 775 | 100 | Minus |
3R | 32079331 | 3R | 5357924..5358076 | 168..16 | 765 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4427..4500 | 351..420 | 109 | 63.5 | Plus |
BS05641.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:07 Download gff for
BS05641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RB | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:57 Download gff for
BS05641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RB | 98..908 | 16..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:48 Download gff for
BS05641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta7-RA | 295..1096 | 22..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:07 Download gff for
BS05641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RB | 98..908 | 16..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:13 Download gff for
BS05641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta7-RA | 295..1096 | 22..823 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:13 Download gff for
BS05641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5357131..5357283 | 671..823 | 100 | <- | Minus |
3R | 5357355..5357856 | 169..670 | 100 | <- | Minus |
3R | 5357924..5358070 | 22..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:48 Download gff for
BS05641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1182853..1183005 | 671..823 | 100 | <- | Minus |
arm_3R | 1183077..1183578 | 169..670 | 100 | <- | Minus |
arm_3R | 1183646..1183792 | 22..168 | 100 | | Minus |
BS05641.pep Sequence
Translation from 16 to 822
> BS05641.pep
MLNNYNSLAQPMWQNGPAPGEFYNFTGGQTPVQQLPRELTTMGPYGTKHS
TASSTTGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILL
GGSGDFADIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWMTRVLYNRRS
RMNPLYIDVVVGGVDNEGTPYLANVDLRGRSYEDYVVATGFARHLAVPLV
REKKPKDRDFTAVEASELIRTCMEVLYYRDTRNISQYTVGVCSVNGCGVE
GPFQVNENWTFAETIKGY*
BS05641.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta7-PB | 268 | CG12000-PB | 1..268 | 1..268 | 1417 | 100 | Plus |
Prosbeta7-PA | 268 | CG12000-PA | 1..268 | 1..268 | 1417 | 100 | Plus |