Clone Sequence Records
BS05644.3prime Sequence
953 bp (738 high quality bases) assembled on 2005-12-02
> BS05644.3prime
ATGGTCTAGAAAGCTTTTAGTTCGTGTACTGATTCTTGAAGGTAAACTCA
GGATGCCTTTCCACACCATGGAAGAATGCAAAGTCACAGATTCGAATATT
CTGGTCCAGGCTAGACAACTTGGCCACCTCCTCGGCCGTCAGTTCGAAAT
CGAAGACGTCCAGATTCTGTTTAAGGCGAGCGGGATTCGTGCTCTTGGGA
ATGGCGGATACACCAGTGTCGATAATCCAGCGGAGGAGGACCTGCGCTGG
CGTCTTGCCATGGCTTGCGGCAATCTCCTTCACCTCAGGGATGTCCATCA
GGTCCGGCAGATCTCTCACGATGCCCGCTCCAGCATTAAACTTGGCGATT
CCCTTGGATCCCAACGGGGAGTAGGCAGTTACGGTAATGTTTTCGGACTT
GCAGAAGTCGACCAGATCTCGCTGCTGCAAATAAACGTGGTGCTCAATCT
GGTTGTTGGCCGGCCGGATCTTGCAGTTCTTCAACAGACGGGCCACCTGA
TCCTTGCTGAAGTTGGATACCCCAATGGACTTGGTGAGACCCTTCTCCAC
CAGGGCCTCCATAGCAACCCAGATGGCTGCGTGGTTCGTGGTAACGTCGA
CCTCCATTAGGCCCTCCTTGTCGAGCTTAAAGCTTCCGTCCTCGTTGATA
TTAATTGTGAAGGGAGTGTGCACCAAATATAAGTCCACATAGTCCAGTTG
CAGATCTTCCAGTGACTTTTTGATGGTTGGCTCAACTTCGTGGGGGCGGT
TGGAAACGGGTGGCACCTTGGTCACAATGAACAGCTCCTCCCGCTTGACC
TTGCCGGCGTCCAGCCAACGCTTTAGGACTCTTCCGATGGCCTTCTCATT
GCCGTAGACTGGCGCCGTATCTATGTGGCGATACCCAGCTTCCAAAGCGC
ATCGATGGCGGTTTCGATTTCTCATCAGATGCCTGCCAGGTGCCGATGCC
AAT
BS05644.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-PA | 990 | CG2767-RA | 109..990 | 898..17 | 4410 | 100 | Minus |
CG2767-PA | 990 | CG2767-RA | 52..84 | 953..921 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-RA | 1309 | CG2767-RA | 195..1134 | 953..16 | 4650 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8006217..8006783 | 66..632 | 2820 | 99.8 | Plus |
3R | 32079331 | 3R | 8007332..8007516 | 754..936 | 825 | 98.9 | Plus |
3R | 32079331 | 3R | 8006837..8006964 | 626..753 | 640 | 100 | Plus |
3R | 32079331 | 3R | 8006099..8006149 | 16..66 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:50:50 has no hits.
BS05644.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:39 Download gff for
BS05644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-PA | 52..990 | 17..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:32 Download gff for
BS05644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-PA | 52..990 | 17..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:58:13 Download gff for
BS05644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 195..1134 | 16..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:11:18 Download gff for
BS05644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 195..1134 | 16..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:11:18 Download gff for
BS05644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8006099..8006148 | 16..65 | 100 | <- | Plus |
3R | 8006217..8006776 | 66..625 | 100 | <- | Plus |
3R | 8006837..8006964 | 626..753 | 100 | <- | Plus |
3R | 8007332..8007512 | 754..932 | 98 | <- | Plus |
3R | 8007896..8007916 | 933..953 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:58:13 Download gff for
BS05644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3831821..3831870 | 16..65 | 100 | <- | Plus |
arm_3R | 3831939..3832498 | 66..625 | 100 | <- | Plus |
arm_3R | 3832559..3832686 | 626..753 | 100 | <- | Plus |
arm_3R | 3833054..3833234 | 754..932 | 98 | <- | Plus |
arm_3R | 3833618..3833638 | 933..953 | 100 | | Plus |
BS05644.5prime Sequence
867 bp (749 high quality bases) assembled on 2005-12-02
> BS05644.5prime
GAAGTTATCAGTCGACATGGTCAACACCAAGTTCTTAACGTTCAACAATG
GAGAGAAGATGCCCGTGATTGGCATCGGCACCTGGCAGGCATCTGATGAG
GAAATCGAAACCGCCATCGATGCGGCTTTGGAAGCTGGGTATCGCCACAT
AGATACGGCGCCAGTCTACGGCAATGAGAAGGCCATCGGAAGAGTCCTAA
AGCGTTGGCTGGACGCCGGCAAGGTCAAGCGGGAGGAGCTGTTCATTGTG
ACCAAGGTGCCACCCGTTTCCAACCGCCCCCACGAAGTTGAGCCAACCAT
CAAAAAGTCACTGGAAGATCTGCAACTGGACTATGTGGACTTATATTTGG
TGCACACTCCCTTCACAATTAATATCAACGAGGACGGAAGCTTTAAGCTC
GACAAGGAGGGCCTAATGGAGGTCGACGTTACCACGAACCACGCAGCCAT
CTGGGTTGCTATGGAGGCCCTGGTGGAGAAGGGTCTCACCAAGTCCATTG
GGGTATCCAACTTCAGCAAGGATCAGGTGGCCCGTCTGTTGAAGAACTGC
AAGATCCGGCCGGCCAACAACCAGATTGAGCACCACGTTTATTTGCAGCA
GCGAGATCTGGTCGACTTCTGCAAGTCCGAAAACATTACCGTAACTGCCT
ACTCCCCGTTGGGATCCAAGGGAATCGCCAAGTTTAATGCTGGAGCGGGC
ATCGTGAGAGATCTGCCGGACCTGATGGACATCCCTGAGGTGAAGGAGAT
TGCCCGCAGCCATGGCAAGACGCCAGCGCAGGTCCTCCTCCGCTGGATTA
TCGACACTGGTGTATCCGCCATTCCCAAGAGCACGAATCCCGCTCGCCTT
AAACAGAATCTGGACGT
BS05644.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-PA | 990 | CG2767-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
CG2767-PA | 990 | CG2767-RA | 742..851 | 758..867 | 550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-RA | 1309 | CG2767-RA | 144..994 | 17..867 | 4210 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8006307..8006783 | 867..391 | 2325 | 99.2 | Minus |
3R | 32079331 | 3R | 8007332..8007516 | 269..85 | 925 | 100 | Minus |
3R | 32079331 | 3R | 8006837..8006964 | 397..270 | 640 | 100 | Minus |
3R | 32079331 | 3R | 8007895..8007967 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:18:52 has no hits.
BS05644.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:40 Download gff for
BS05644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:33 Download gff for
BS05644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:37:20 Download gff for
BS05644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 133..994 | 7..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:47 Download gff for
BS05644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 133..994 | 7..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:47 Download gff for
BS05644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8006307..8006776 | 398..867 | 99 | <- | Minus |
3R | 8006837..8006964 | 270..397 | 100 | <- | Minus |
3R | 8007332..8007512 | 89..269 | 100 | <- | Minus |
3R | 8007896..8007978 | 7..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:37:20 Download gff for
BS05644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3832029..3832498 | 398..867 | 99 | <- | Minus |
arm_3R | 3832559..3832686 | 270..397 | 100 | <- | Minus |
arm_3R | 3833054..3833234 | 89..269 | 100 | <- | Minus |
arm_3R | 3833618..3833700 | 7..88 | 95 | | Minus |
BS05644.complete Sequence
1022 bp (1022 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635186
> BS05644.complete
GAAGTTATCAGTCGACATGGTCAACACCAAGTTCTTAACGTTCAACAATG
GAGAGAAGATGCCCGTGATTGGCATCGGCACCTGGCAGGCATCTGATGAG
GAAATCGAAACCGCCATCGATGCGGCTTTGGAAGCTGGGTATCGCCACAT
AGATACGGCGCCAGTCTACGGCAATGAGAAGGCCATCGGAAGAGTCCTAA
AGCGTTGGCTGGACGCCGGCAAGGTCAAGCGGGAGGAGCTGTTCATTGTG
ACCAAGGTGCCACCCGTTTCCAACCGCCCCCACGAAGTTGAGCCAACCAT
CAAAAAGTCACTGGAAGATCTGCAACTGGACTATGTGGACTTATATTTGG
TGCACACTCCCTTCACAATTAATATCAACGAGGACGGAAGCTTTAAGCTC
GACAAGGAGGGCCTAATGGAGGTCGACGTTACCACGAACCACGCAGCCAT
CTGGGTTGCTATGGAGGCCCTGGTGGAGAAGGGTCTCACCAAGTCCATTG
GGGTATCCAACTTCAGCAAGGATCAGGTGGCCCGTCTGTTGAAGAACTGC
AAGATCCGGCCGGCCAACAACCAGATTGAGCACCACGTTTATTTGCAGCA
GCGAGATCTGGTCGACTTCTGCAAGTCCGAAAACATTACCGTAACTGCCT
ACTCCCCGTTGGGATCCAAGGGAATCGCCAAGTTTAATGCTGGAGCGGGC
ATCGTGAGAGATCTGCCGGACCTGATGGACATCCCTGAGGTGAAGGAGAT
TGCCGCAAGCCATGGCAAGACGCCAGCGCAGGTCCTCCTCCGCTGGATTA
TCGACACTGGTGTATCCGCCATTCCCAAGAGCACGAATCCCGCTCGCCTT
AAACAGAATCTGGACGTCTTCGATTTCGAACTGACGGCCGAGGAGGTGGC
CAAGTTGTCTAGCCTGGACCAGAATATTCGAATCTGTGACTTTGCATTCT
TCCATGGTGTGGAAAGGCATCCTGAGTTTACCTTCAAGAATCAGTACACG
AACTAAAAGCTTTCTAGACCAT
BS05644.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-RA | 990 | CG2767-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-RA | 1309 | CG2767-RA | 144..1134 | 17..1007 | 4955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8006217..8006783 | 957..391 | 2820 | 99.8 | Minus |
3R | 32079331 | 3R | 8007332..8007516 | 269..85 | 925 | 100 | Minus |
3R | 32079331 | 3R | 8006837..8006964 | 397..270 | 640 | 100 | Minus |
3R | 32079331 | 3R | 8007895..8007967 | 89..17 | 365 | 100 | Minus |
3R | 32079331 | 3R | 8006099..8006149 | 1007..957 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:57:13 has no hits.
BS05644.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:08 Download gff for
BS05644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 1..990 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:59 Download gff for
BS05644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 142..1143 | 7..1007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:29 Download gff for
BS05644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 144..1131 | 17..1004 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:09 Download gff for
BS05644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 142..1143 | 7..1007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:43 Download gff for
BS05644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 144..1131 | 17..1004 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:43 Download gff for
BS05644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8006102..8006148 | 958..1004 | 100 | <- | Minus |
3R | 8006217..8006776 | 398..957 | 100 | <- | Minus |
3R | 8006837..8006964 | 270..397 | 100 | <- | Minus |
3R | 8007332..8007512 | 89..269 | 100 | <- | Minus |
3R | 8007896..8007967 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:29 Download gff for
BS05644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3832559..3832686 | 270..397 | 100 | <- | Minus |
arm_3R | 3833054..3833234 | 89..269 | 100 | <- | Minus |
arm_3R | 3833618..3833689 | 17..88 | 100 | | Minus |
arm_3R | 3831824..3831870 | 958..1004 | 100 | <- | Minus |
arm_3R | 3831939..3832498 | 398..957 | 100 | <- | Minus |
BS05644.pep Sequence
Translation from 16 to 1005
> BS05644.pep
MVNTKFLTFNNGEKMPVIGIGTWQASDEEIETAIDAALEAGYRHIDTAPV
YGNEKAIGRVLKRWLDAGKVKREELFIVTKVPPVSNRPHEVEPTIKKSLE
DLQLDYVDLYLVHTPFTININEDGSFKLDKEGLMEVDVTTNHAAIWVAME
ALVEKGLTKSIGVSNFSKDQVARLLKNCKIRPANNQIEHHVYLQQRDLVD
FCKSENITVTAYSPLGSKGIAKFNAGAGIVRDLPDLMDIPEVKEIAASHG
KTPAQVLLRWIIDTGVSAIPKSTNPARLKQNLDVFDFELTAEEVAKLSSL
DQNIRICDFAFFHGVERHPEFTFKNQYTN*
BS05644.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-PA | 329 | CG2767-PA | 1..329 | 1..329 | 1705 | 100 | Plus |
CG6084-PA | 316 | CG6084-PA | 8..310 | 9..319 | 622 | 42.8 | Plus |
CG6084-PD | 316 | CG6084-PD | 8..316 | 9..327 | 616 | 42 | Plus |
CG10638-PD | 317 | CG10638-PD | 10..317 | 10..327 | 604 | 40.4 | Plus |
CG10638-PA | 317 | CG10638-PA | 10..317 | 10..327 | 604 | 40.4 | Plus |