Clone BS05645 Report

Search the DGRC for BS05645

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG9436-RA
Protein status:BS05645.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05645.3prime Sequence

941 bp (797 high quality bases) assembled on 2005-12-02

> BS05645.3prime
ATGGTCTAGAAAGCTTCTAGAACTCGTCGTTGAACGGGTAGTACTTATGG
CCCGACATTCCCGAAAAGGGTACCGTGCGCTGCCCGGTGTGATACTGCTC
CATGCCGGCGACGTCGTCTGGACTCAGCTCGAAGTCGAAGACGCGGAAGT
TCTCCTCGATGCGGGCCTTGTTCGACGACTTGGGCAGTGGCACCACGCCT
AGCTGGACCAGATAACGCAGGCAGATCTGTGCCGTGGTGCGGCCGTACTT
CTTGGCCAGATTCTGGGCATGCTCGTCGTAGAGGAAGGGCGGCCACTGCC
GAGCGGGCTGGGGACGTGCCAGGGGGCAGTAGGCGCAGATGACCAGTCCG
TGGCGCTTGGCATGCTCCCGGAGCTGGCGCTGCTGAAAGCCTGGGTGGCA
CTCCACCTGGTTCACTACCGGCCGGATGCGGCAGTTGGCTAGCACTCGCT
CCGTCTGCGCGGCGTTGAAGTTGGACAGGCCGATGCTGCGCGTCAGGCCC
AGATCCACCAGCTTCTCCATCTCGCGCCAGGTGTCCAGATAGTCCACGTC
CGTCAGCTCCAGGGTTCCGTGCACGTTGCTGTCATTGTGGAACTTCTGGC
CCACCGGCATGTGCATCAGGTAGAGGTCTACGTATTCCAAACCCAGGTTG
CTAAGGCTCAGGCGGCAGGCGCGCTCCACCAATGCAGGGTCGTGGTGGAT
TCCGCCTAGCTTGGTGGTCACGAAAACCTCCTCGCGTGTGACCACTCCCT
CGGCGATCTTCTCGGAGATCGCCTGGCCCACCTCAGCCTCGTTCTCGTAG
ACGAAGGCGGTGTCCAGGTGCCGGTAGCCCACGTCGAGGGCGTGGCGCGT
TGAGTGGTAGGCGTCCGACTCGAACGACTTCCAGGTGCCAAGGCCCAGAG
TTGGCATCTCGCGCCCGTTGTTCAGCCGGATGGTGGGAGCC

BS05645.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9436-PA 936 CG9436-RA 12..936 941..17 4625 100 Minus
CG10863-PA 951 CG10863-RA 433..476 535..492 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9436-RA 1303 CG9436-RA 144..1069 941..16 4630 100 Minus
CG10863-RA 1089 CG10863-RA 466..537 535..464 210 86.1 Minus
CG12766-RA 1075 CG12766-RA 152..289 845..708 180 76.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6757835..6758760 16..941 4630 100 Plus
3L 28110227 3L 3941683..3941754 464..535 210 86.1 Plus
Blast to na_te.dros performed on 2015-01-30 15:19:42 has no hits.

BS05645.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:41 Download gff for BS05645.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9436-PA 12..936 17..941 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:34 Download gff for BS05645.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9436-PA 12..936 17..941 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:12:21 Download gff for BS05645.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9436-RA 144..1076 9..941 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:32 Download gff for BS05645.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9436-RA 144..1076 9..941 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:32 Download gff for BS05645.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6757828..6758760 9..941 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:12:21 Download gff for BS05645.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2645333..2646265 9..941 99   Plus

BS05645.5prime Sequence

958 bp (864 high quality bases) assembled on 2005-12-02

> BS05645.5prime
GAAGTTATCAGTCGACATGACCAATCTGGCTCCCACCATCCGGCTGAACA
ACGGGCGCGAGATGCCAACTCTGGGCCTTGGCACCTGGAAGTCGTTCGAG
TCGGACGCCTACCACTCAACGCGCCACGCCCTCGACGTGGGCTACCGGCA
CCTGGACACCGCCTTCGTCTACGAGAACGAGGCTGAGGTGGGCCAGGCGA
TCTCCGAGAAGATCGCCGAGGGAGTGGTCACACGCGAGGAGGTTTTCGTG
ACCACCAAGCTAGGCGGAATCCACCACGACCCTGCATTGGTGGAGCGCGC
CTGCCGCCTGAGCCTTAGCAACCTGGGTTTGGAATACGTAGACCTCTACC
TGATGCACATGCCGGTGGGCCAGAAGTTCCACAATGACAGCAACGTGCAC
GGAACCCTGGAGCTGACGGACGTGGACTATCTGGACACCTGGCGCGAGAT
GGAGAAGCTGGTGGATCTGGGCCTGACGCGCAGCATCGGCCTGTCCAACT
TCAACGCCGCGCAGACGGAGCGAGTGCTAGCCAACTGCCGCATCCGGCCG
GTAGTGAACCAGGTGGAGTGCCACCCAGGCTTTCAGCAGCGCCAGCTCCG
GGAGCATGCCAAGCGCCACGGACTGGTCATCTGCGCCTACTGCCCCCTGG
CACGTCCCCAGCCCGCTCGGCAGTGGCCGCCCTTCCTCTACGACGAGCAT
GCCCAGAATCTGGCCAAGAAGTACGGCCGCACCACGGCACAGATCTGCCT
GCGTTATCTGGTCCAGCTAGGCGTGGTGCCACTGCCCAAGTCGTCGAACA
AGGCCCGCATCGAGGAGAACTTCCGCGTCTTCGACTTCGAGCTGAGTCCA
GACGACGTCGCCGGCATGGAGCAGTATCACACCGGGCAGCGCACGGTACC
CTTTTTCGGGATGTCGGGCCATAAGTACTACCCGTTCAACGACGAGTTCT
AGAAAGCT

BS05645.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9436-PA 936 CG9436-RA 1..936 17..952 4605 99.6 Plus
CG10863-PA 951 CG10863-RA 433..476 434..477 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9436-RA 1303 CG9436-RA 133..1069 17..953 4640 99.8 Plus
CG10863-RA 1089 CG10863-RA 466..537 434..505 210 86.1 Plus
CG12766-RA 1075 CG12766-RA 152..289 124..261 180 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6757835..6758771 953..17 4640 99.7 Minus
3L 28110227 3L 3941683..3941754 505..434 210 86.1 Minus
Blast to na_te.dros performed on 2015-02-11 09:39:50 has no hits.

BS05645.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:42 Download gff for BS05645.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9436-PA 1..936 17..952 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:35 Download gff for BS05645.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9436-PA 1..936 17..952 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:17:01 Download gff for BS05645.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9436-RA 133..1075 17..958 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:37 Download gff for BS05645.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9436-RA 133..1075 17..958 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:37 Download gff for BS05645.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6757829..6758771 17..958 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:17:01 Download gff for BS05645.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2645334..2646276 17..958 99   Minus

BS05645.complete Sequence

968 bp (968 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635187

> BS05645.complete
GAAGTTATCAGTCGACATGACCAATCTGGCTCCCACCATCCGGCTGAACA
ACGGGCGCGAGATGCCAACTCTGGGCCTTGGCACCTGGAAGTCGTTCGAG
TCGGACGCCTACCACTCAACGCGCCACGCCCTCGACGTGGGCTACCGGCA
CCTGGACACCGCCTTCGTCTACGAGAACGAGGCTGAGGTGGGCCAGGCGA
TCTCCGAGAAGATCGCCGAGGGAGTGGTCACACGCGAGGAGGTTTTCGTG
ACCACCAAGCTAGGCGGAATCCACCACGACCCTGCATTGGTGGAGCGCGC
CTGCCGCCTGAGCCTTAGCAACCTGGGTTTGGAATACGTAGACCTCTACC
TGATGCACATGCCGGTGGGCCAGAAGTTCCACAATGACAGCAACGTGCAC
GGAACCCTGGAGCTGACGGACGTGGACTATCTGGACACCTGGCGCGAGAT
GGAGAAGCTGGTGGATCTGGGCCTGACGCGCAGCATCGGCCTGTCCAACT
TCAACGCCGCGCAGACGGAGCGAGTGCTAGCCAACTGCCGCATCCGGCCG
GTAGTGAACCAGGTGGAGTGCCACCCAGGCTTTCAGCAGCGCCAGCTCCG
GGAGCATGCCAAGCGCCACGGACTGGTCATCTGCGCCTACTGCCCCCTGG
CACGTCCCCAGCCCGCTCGGCAGTGGCCGCCCTTCCTCTACGACGAGCAT
GCCCAGAATCTGGCCAAGAAGTACGGCCGCACCACGGCACAGATCTGCCT
GCGTTATCTGGTCCAGCTAGGCGTGGTGCCACTGCCCAAGTCGTCGAACA
AGGCCCGCATCGAGGAGAACTTCCGCGTCTTCGACTTCGAGCTGAGTCCA
GACGACGTCGCCGGCATGGAGCAGTATCACACCGGGCAGCGCACGGTACC
CTTTTCGGGAATGTCGGGCCATAAGTACTACCCGTTCAACGACGAGTTCT
AGAAGCTTTCTAGACCAT

BS05645.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9436-RA 936 CG9436-PA 1..936 17..952 4680 100 Plus
CG10863-RA 951 CG10863-PA 433..504 434..505 210 86.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9436-RA 1303 CG9436-RA 133..1069 17..953 4685 100 Plus
CG10863-RA 1089 CG10863-RA 466..537 434..505 210 86.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6757835..6758771 953..17 4685 100 Minus
3L 28110227 3L 3941683..3941754 505..434 210 86.1 Minus
Blast to na_te.dros performed on 2014-11-27 15:27:13 has no hits.

BS05645.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:11 Download gff for BS05645.complete
Subject Subject Range Query Range Percent Splice Strand
CG9436-RA 1..936 17..952 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:01 Download gff for BS05645.complete
Subject Subject Range Query Range Percent Splice Strand
CG9436-RA 129..1072 17..960 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:20 Download gff for BS05645.complete
Subject Subject Range Query Range Percent Splice Strand
CG9436-RA 133..1068 17..952 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:11 Download gff for BS05645.complete
Subject Subject Range Query Range Percent Splice Strand
CG9436-RA 116..1059 17..960 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:06 Download gff for BS05645.complete
Subject Subject Range Query Range Percent Splice Strand
CG9436-RA 133..1068 17..952 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:06 Download gff for BS05645.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6757836..6758771 17..952 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:20 Download gff for BS05645.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2645341..2646276 17..952 100   Minus

BS05645.pep Sequence

Translation from 16 to 951

> BS05645.pep
MTNLAPTIRLNNGREMPTLGLGTWKSFESDAYHSTRHALDVGYRHLDTAF
VYENEAEVGQAISEKIAEGVVTREEVFVTTKLGGIHHDPALVERACRLSL
SNLGLEYVDLYLMHMPVGQKFHNDSNVHGTLELTDVDYLDTWREMEKLVD
LGLTRSIGLSNFNAAQTERVLANCRIRPVVNQVECHPGFQQRQLREHAKR
HGLVICAYCPLARPQPARQWPPFLYDEHAQNLAKKYGRTTAQICLRYLVQ
LGVVPLPKSSNKARIEENFRVFDFELSPDDVAGMEQYHTGQRTVPFSGMS
GHKYYPFNDEF*

BS05645.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9436-PA 311 CG9436-PA 1..311 1..311 1661 100 Plus
CG10638-PD 317 CG10638-PD 3..317 4..311 950 57.1 Plus
CG10638-PA 317 CG10638-PA 3..317 4..311 950 57.1 Plus
CG10863-PA 316 CG10863-PA 1..316 1..311 910 51.9 Plus
CG12766-PA 320 CG12766-PA 12..314 11..308 833 50.8 Plus