Clone Sequence Records
BS05645.3prime Sequence
941 bp (797 high quality bases) assembled on 2005-12-02
> BS05645.3prime
ATGGTCTAGAAAGCTTCTAGAACTCGTCGTTGAACGGGTAGTACTTATGG
CCCGACATTCCCGAAAAGGGTACCGTGCGCTGCCCGGTGTGATACTGCTC
CATGCCGGCGACGTCGTCTGGACTCAGCTCGAAGTCGAAGACGCGGAAGT
TCTCCTCGATGCGGGCCTTGTTCGACGACTTGGGCAGTGGCACCACGCCT
AGCTGGACCAGATAACGCAGGCAGATCTGTGCCGTGGTGCGGCCGTACTT
CTTGGCCAGATTCTGGGCATGCTCGTCGTAGAGGAAGGGCGGCCACTGCC
GAGCGGGCTGGGGACGTGCCAGGGGGCAGTAGGCGCAGATGACCAGTCCG
TGGCGCTTGGCATGCTCCCGGAGCTGGCGCTGCTGAAAGCCTGGGTGGCA
CTCCACCTGGTTCACTACCGGCCGGATGCGGCAGTTGGCTAGCACTCGCT
CCGTCTGCGCGGCGTTGAAGTTGGACAGGCCGATGCTGCGCGTCAGGCCC
AGATCCACCAGCTTCTCCATCTCGCGCCAGGTGTCCAGATAGTCCACGTC
CGTCAGCTCCAGGGTTCCGTGCACGTTGCTGTCATTGTGGAACTTCTGGC
CCACCGGCATGTGCATCAGGTAGAGGTCTACGTATTCCAAACCCAGGTTG
CTAAGGCTCAGGCGGCAGGCGCGCTCCACCAATGCAGGGTCGTGGTGGAT
TCCGCCTAGCTTGGTGGTCACGAAAACCTCCTCGCGTGTGACCACTCCCT
CGGCGATCTTCTCGGAGATCGCCTGGCCCACCTCAGCCTCGTTCTCGTAG
ACGAAGGCGGTGTCCAGGTGCCGGTAGCCCACGTCGAGGGCGTGGCGCGT
TGAGTGGTAGGCGTCCGACTCGAACGACTTCCAGGTGCCAAGGCCCAGAG
TTGGCATCTCGCGCCCGTTGTTCAGCCGGATGGTGGGAGCC
BS05645.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9436-PA | 936 | CG9436-RA | 12..936 | 941..17 | 4625 | 100 | Minus |
CG10863-PA | 951 | CG10863-RA | 433..476 | 535..492 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:19:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9436-RA | 1303 | CG9436-RA | 144..1069 | 941..16 | 4630 | 100 | Minus |
CG10863-RA | 1089 | CG10863-RA | 466..537 | 535..464 | 210 | 86.1 | Minus |
CG12766-RA | 1075 | CG12766-RA | 152..289 | 845..708 | 180 | 76.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6757835..6758760 | 16..941 | 4630 | 100 | Plus |
3L | 28110227 | 3L | 3941683..3941754 | 464..535 | 210 | 86.1 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:19:42 has no hits.
BS05645.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:41 Download gff for
BS05645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-PA | 12..936 | 17..941 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:34 Download gff for
BS05645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-PA | 12..936 | 17..941 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:12:21 Download gff for
BS05645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 144..1076 | 9..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:32 Download gff for
BS05645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 144..1076 | 9..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:32 Download gff for
BS05645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6757828..6758760 | 9..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:12:21 Download gff for
BS05645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2645333..2646265 | 9..941 | 99 | | Plus |
BS05645.5prime Sequence
958 bp (864 high quality bases) assembled on 2005-12-02
> BS05645.5prime
GAAGTTATCAGTCGACATGACCAATCTGGCTCCCACCATCCGGCTGAACA
ACGGGCGCGAGATGCCAACTCTGGGCCTTGGCACCTGGAAGTCGTTCGAG
TCGGACGCCTACCACTCAACGCGCCACGCCCTCGACGTGGGCTACCGGCA
CCTGGACACCGCCTTCGTCTACGAGAACGAGGCTGAGGTGGGCCAGGCGA
TCTCCGAGAAGATCGCCGAGGGAGTGGTCACACGCGAGGAGGTTTTCGTG
ACCACCAAGCTAGGCGGAATCCACCACGACCCTGCATTGGTGGAGCGCGC
CTGCCGCCTGAGCCTTAGCAACCTGGGTTTGGAATACGTAGACCTCTACC
TGATGCACATGCCGGTGGGCCAGAAGTTCCACAATGACAGCAACGTGCAC
GGAACCCTGGAGCTGACGGACGTGGACTATCTGGACACCTGGCGCGAGAT
GGAGAAGCTGGTGGATCTGGGCCTGACGCGCAGCATCGGCCTGTCCAACT
TCAACGCCGCGCAGACGGAGCGAGTGCTAGCCAACTGCCGCATCCGGCCG
GTAGTGAACCAGGTGGAGTGCCACCCAGGCTTTCAGCAGCGCCAGCTCCG
GGAGCATGCCAAGCGCCACGGACTGGTCATCTGCGCCTACTGCCCCCTGG
CACGTCCCCAGCCCGCTCGGCAGTGGCCGCCCTTCCTCTACGACGAGCAT
GCCCAGAATCTGGCCAAGAAGTACGGCCGCACCACGGCACAGATCTGCCT
GCGTTATCTGGTCCAGCTAGGCGTGGTGCCACTGCCCAAGTCGTCGAACA
AGGCCCGCATCGAGGAGAACTTCCGCGTCTTCGACTTCGAGCTGAGTCCA
GACGACGTCGCCGGCATGGAGCAGTATCACACCGGGCAGCGCACGGTACC
CTTTTTCGGGATGTCGGGCCATAAGTACTACCCGTTCAACGACGAGTTCT
AGAAAGCT
BS05645.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9436-PA | 936 | CG9436-RA | 1..936 | 17..952 | 4605 | 99.6 | Plus |
CG10863-PA | 951 | CG10863-RA | 433..476 | 434..477 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9436-RA | 1303 | CG9436-RA | 133..1069 | 17..953 | 4640 | 99.8 | Plus |
CG10863-RA | 1089 | CG10863-RA | 466..537 | 434..505 | 210 | 86.1 | Plus |
CG12766-RA | 1075 | CG12766-RA | 152..289 | 124..261 | 180 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6757835..6758771 | 953..17 | 4640 | 99.7 | Minus |
3L | 28110227 | 3L | 3941683..3941754 | 505..434 | 210 | 86.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:39:50 has no hits.
BS05645.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:42 Download gff for
BS05645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-PA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:35 Download gff for
BS05645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-PA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:17:01 Download gff for
BS05645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 133..1075 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:37 Download gff for
BS05645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 133..1075 | 17..958 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:37 Download gff for
BS05645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6757829..6758771 | 17..958 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:17:01 Download gff for
BS05645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2645334..2646276 | 17..958 | 99 | | Minus |
BS05645.complete Sequence
968 bp (968 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635187
> BS05645.complete
GAAGTTATCAGTCGACATGACCAATCTGGCTCCCACCATCCGGCTGAACA
ACGGGCGCGAGATGCCAACTCTGGGCCTTGGCACCTGGAAGTCGTTCGAG
TCGGACGCCTACCACTCAACGCGCCACGCCCTCGACGTGGGCTACCGGCA
CCTGGACACCGCCTTCGTCTACGAGAACGAGGCTGAGGTGGGCCAGGCGA
TCTCCGAGAAGATCGCCGAGGGAGTGGTCACACGCGAGGAGGTTTTCGTG
ACCACCAAGCTAGGCGGAATCCACCACGACCCTGCATTGGTGGAGCGCGC
CTGCCGCCTGAGCCTTAGCAACCTGGGTTTGGAATACGTAGACCTCTACC
TGATGCACATGCCGGTGGGCCAGAAGTTCCACAATGACAGCAACGTGCAC
GGAACCCTGGAGCTGACGGACGTGGACTATCTGGACACCTGGCGCGAGAT
GGAGAAGCTGGTGGATCTGGGCCTGACGCGCAGCATCGGCCTGTCCAACT
TCAACGCCGCGCAGACGGAGCGAGTGCTAGCCAACTGCCGCATCCGGCCG
GTAGTGAACCAGGTGGAGTGCCACCCAGGCTTTCAGCAGCGCCAGCTCCG
GGAGCATGCCAAGCGCCACGGACTGGTCATCTGCGCCTACTGCCCCCTGG
CACGTCCCCAGCCCGCTCGGCAGTGGCCGCCCTTCCTCTACGACGAGCAT
GCCCAGAATCTGGCCAAGAAGTACGGCCGCACCACGGCACAGATCTGCCT
GCGTTATCTGGTCCAGCTAGGCGTGGTGCCACTGCCCAAGTCGTCGAACA
AGGCCCGCATCGAGGAGAACTTCCGCGTCTTCGACTTCGAGCTGAGTCCA
GACGACGTCGCCGGCATGGAGCAGTATCACACCGGGCAGCGCACGGTACC
CTTTTCGGGAATGTCGGGCCATAAGTACTACCCGTTCAACGACGAGTTCT
AGAAGCTTTCTAGACCAT
BS05645.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9436-RA | 936 | CG9436-PA | 1..936 | 17..952 | 4680 | 100 | Plus |
CG10863-RA | 951 | CG10863-PA | 433..504 | 434..505 | 210 | 86.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9436-RA | 1303 | CG9436-RA | 133..1069 | 17..953 | 4685 | 100 | Plus |
CG10863-RA | 1089 | CG10863-RA | 466..537 | 434..505 | 210 | 86.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6757835..6758771 | 953..17 | 4685 | 100 | Minus |
3L | 28110227 | 3L | 3941683..3941754 | 505..434 | 210 | 86.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:27:13 has no hits.
BS05645.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:11 Download gff for
BS05645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:01 Download gff for
BS05645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 129..1072 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:20 Download gff for
BS05645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 133..1068 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:11 Download gff for
BS05645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 116..1059 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:06 Download gff for
BS05645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 133..1068 | 17..952 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:06 Download gff for
BS05645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6757836..6758771 | 17..952 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:20 Download gff for
BS05645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2645341..2646276 | 17..952 | 100 | | Minus |
BS05645.pep Sequence
Translation from 16 to 951
> BS05645.pep
MTNLAPTIRLNNGREMPTLGLGTWKSFESDAYHSTRHALDVGYRHLDTAF
VYENEAEVGQAISEKIAEGVVTREEVFVTTKLGGIHHDPALVERACRLSL
SNLGLEYVDLYLMHMPVGQKFHNDSNVHGTLELTDVDYLDTWREMEKLVD
LGLTRSIGLSNFNAAQTERVLANCRIRPVVNQVECHPGFQQRQLREHAKR
HGLVICAYCPLARPQPARQWPPFLYDEHAQNLAKKYGRTTAQICLRYLVQ
LGVVPLPKSSNKARIEENFRVFDFELSPDDVAGMEQYHTGQRTVPFSGMS
GHKYYPFNDEF*
BS05645.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9436-PA | 311 | CG9436-PA | 1..311 | 1..311 | 1661 | 100 | Plus |
CG10638-PD | 317 | CG10638-PD | 3..317 | 4..311 | 950 | 57.1 | Plus |
CG10638-PA | 317 | CG10638-PA | 3..317 | 4..311 | 950 | 57.1 | Plus |
CG10863-PA | 316 | CG10863-PA | 1..316 | 1..311 | 910 | 51.9 | Plus |
CG12766-PA | 320 | CG12766-PA | 12..314 | 11..308 | 833 | 50.8 | Plus |