Clone BS05646 Report

Search the DGRC for BS05646

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptSgt-RA
Protein status:BS05646.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05646.3prime Sequence

950 bp (835 high quality bases) assembled on 2005-12-02

> BS05646.3prime
ATGGTCTAGAAAGCTTCTAGGTGCTCGGTGGTGGCTGATTGCCCGGCTGC
TGTTCATTGCCAGGATTTGCGTTCGAATTGGGAAAGCCAGTCAATTGGCT
GGTCATGTTATAGATCATTTGCACCATGTCATTGGGCAGGGTCGGGGCAT
TGCCGCCGCCGAACTGCTGGCGAATGGTGTTCATGATCATTGGATTCTGA
AGCATCGACAGCAGCTGCTCCACGTCGATCTCGGCGTTGTTGAACAAATT
CCTAACCATTGGCTGGGACAGCATGTTGATTAGGTCTTCCCTTAATCGCC
CCGTTTGGGGCGGCTGGTTCCTGGCGTTTCTGGCCGCTTCCAGGTTGCTC
TTGTACACCTCGTTGTCCGGTTCCAGCTCGATGGCCTTGGCGTAGGCCTG
TTCCGCCTTCTCGAAATTGCCCATGTTGGAGTACGCCACGCCCAGGCGGC
AGTACGCCTTGCTGTAGTTGTTGTTGTACACCAGGGCGGACTTGCAATCG
GTTACGGCGCGTTCGTTCTCACCCAGCCGGATGTGGGCCGCAGCCCGATT
GCAGTAGAAGATCGGATTCTTGGGATCGAAGGCGATGGCACGATTGTACT
GCAGCAGTGCTTCATTGTACTTGTTCTCCTTCATCAGCCGGTTGCCCTCG
TTCTTGATGGATTCGGCCAGGGCCAGGGATTCCGGATTGCGTTCTGTATA
CAGCGACTGGAAGAGCTCGAACATGTCAATGTTATTGGGAACGGCGGCGG
CGGCGGCGCCGATACCAGCACTTCCGCTGGCCACCGCATCATCGTCCGGT
GCGCTCGCAGTGCTGCTGCTCTGTGTGGTGGCCTGCTCCCTCACAGCCGC
AGCCGGCGCTGCCTCCACATCATCGCCCAAGTCAAAGGCCGCCTGCAGGC
ACTGGATCGCCACCTCGATGCTTTCGGTCTGGTCGGCGACATCACGTCCC

BS05646.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5094-PA 996 Sgt-RA 174..996 839..17 4115 100 Minus
CG5094-PA 996 Sgt-RA 79..169 934..844 455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt-RB 1463 CG5094-RB 339..1276 950..14 4620 99.7 Minus
Sgt-RA 1284 CG5094-RA 160..1097 950..14 4620 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17473649..17474586 950..14 4580 99.5 Minus
Blast to na_te.dros performed on 2015-02-10 22:13:27 has no hits.

BS05646.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:43 Download gff for BS05646.3prime
Subject Subject Range Query Range Percent Splice Strand
Sgt-PA 62..996 17..950 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:37 Download gff for BS05646.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5094-PA 62..996 17..950 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:46:46 Download gff for BS05646.3prime
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 160..1105 5..950 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:44 Download gff for BS05646.3prime
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 160..1105 5..950 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:44 Download gff for BS05646.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17473649..17474594 5..950 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:46:46 Download gff for BS05646.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17473649..17474594 5..950 99   Minus

BS05646.5prime Sequence

826 bp (776 high quality bases) assembled on 2005-12-02

> BS05646.5prime
GAAGTTATCAGTCGACATGCCGGACGCAGTGCAGCAGAGTTTCGTGCGTA
GCTTCATTGACTACCTGAAGAAGCAGGGGGACGTGATGTCGCCGGACCAG
ACCGAAAGCATCGAGGTGGCGATCCAGTGCCTGCAGGCGGCCTTTGACTT
GGGCGATGATGTGGAGGCAGCGCCGGCTGCGGCTGGTGAGGAGCAGGCCA
CCACACAGAGCAGCAGCACTGCGAGCGCACCGGACGATGATGCGGTGGCC
AGCGGAAGTGCTGGTATCGGCGCCGCCGCCGCCGCCGTTCCCAATAACAT
TGACATGTTCGAGCTCTTCCAGTCGCTGTATACAGAACGCAATCCGGAAT
CCCTGGCCCTGGCCGAATCCATCAAGAACGAGGGCAACCGGCTGATGAAG
GAGAACAAGTACAATGAAGCACTGCTGCAGTACAATCGTGCCATCGCCTT
CGATCCCAAGAATCCGATCTTCTACTGCAATCGGGCTGCGGCCCACATCC
GGCTGGGTGAGAACGAACGCGCCGTAACCGATTGCAAGTCCGCCCTGGTG
TACAACAACAACTACAGCAAGGCGTACTGCCGCCTGGGCGTGGCGTACTC
CAACATGGGCAATTTCGAGAAGGCGGAACAGGCCTACGCCAAGGCCATCG
AGCTGGAACCGGACAACGAGGTGTACAAGAGCAACCTGGAAGCGGCCAGA
AACGCCAGGAACCAGCCGCCCCAAACGGGGCGATTAAGGGAAGACCTAAT
CAACATGCTGTCCCAGCCAATGGTTAGGGAATTTGTTCAACACGCCGAGA
TCGACGTGGAGCAGCTGCTGTCGATG

BS05646.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5094-PA 996 Sgt-RA 1..762 17..778 3810 100 Plus
CG5094-PA 996 Sgt-RA 776..810 792..826 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt-RB 1463 CG5094-RB 278..1087 17..826 4005 99.8 Plus
Sgt-RA 1284 CG5094-RA 99..908 17..826 4005 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17473588..17474397 17..826 3955 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 10:52:37 has no hits.

BS05646.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:44 Download gff for BS05646.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgt-PA 1..810 17..826 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:38 Download gff for BS05646.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5094-PA 1..810 17..826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:27:06 Download gff for BS05646.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 99..908 17..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:41 Download gff for BS05646.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 99..908 17..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:41 Download gff for BS05646.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17473588..17474397 17..826 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:27:06 Download gff for BS05646.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17473588..17474397 17..826 99   Plus

BS05646.complete Sequence

1028 bp (1028 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635188

> BS05646.complete
GAAGTTATCAGTCGACATGCCGGACGCAGTGCAGCAGAGTTTCGTGCGTA
GCTTCATTGACTACCTGAAGAAGCAGGGGGACGTGATGTCGCCGGACCAG
ACCGAAAGCATCGAGGTGGCGATCCAGTGCCTGCAGGCGGCCTTTGACTT
GGGCGATGATGTGGAGGCAGCGCCGGCTGCGGCTGGTGAGGAGCAGGCCA
CCACACAGAGCAGCAGCACTGCGAGCGCACCGGACGATGATGCGGTGGCC
AGCGGAAGTGCTGGTATCGGCGCCGCCGCCGCCGCCGTTCCCAATAACAT
TGACATGTTCGAGCTCTTCCAGTCGCTGTATACAGAACGCAATCCGGAAT
CCCTGGCCCTGGCCGAATCCATCAAGAACGAGGGCAACCGGCTGATGAAG
GAGAACAAGTACAATGAAGCACTGCTGCAGTACAATCGTGCCATCGCCTT
CGATCCCAAGAATCCGATCTTCTACTGCAATCGGGCTGCGGCCCACATCC
GGCTGGGTGAGAACGAACGCGCCGTAACCGATTGCAAGTCCGCCCTGGTG
TACAACAACAACTACAGCAAGGCGTACTGCCGCCTGGGCGTGGCGTACTC
CAACATGGGCAATTTCGAGAAGGCGGAACAGGCCTACGCCAAGGCCATCG
AGCTGGAACCGGACAACGAGGTGTACAAGAGCAACCTGGAAGCGGCCAGA
AACGCCAGGAACCAGCCGCCCCAAACGGGGCGATTAAGGGAAGACCTAAT
CAACATGCTGTCCCAGCCAATGGTTAGGAATTTGTTCAACAACGCCGAGA
TCGACGTGGAGCAGCTGCTGTCGATGCTTCAGAATCCAATGATCATGAAC
ACCATTCGCCAGCAGTTCGGCGGCGGCAATGCCCCGACCCTGCCCAATGA
CATGGTGCAAATGATCTATAACATGACCAGCCAATTGACTGGCTTTCCCA
ATTCGAACGCAAATCCTGGCAATGAACAGCAGCCGGGCAATCAGCCACCA
CCGAGCACCTAGAAGCTTTCTAGACCAT

BS05646.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt-RB 996 CG5094-PB 1..996 17..1012 4980 100 Plus
Sgt-RA 996 CG5094-PA 1..996 17..1012 4980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt-RB 1463 CG5094-RB 278..1276 17..1015 4995 100 Plus
Sgt-RA 1284 CG5094-RA 99..1097 17..1015 4995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17473588..17474586 17..1015 4995 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:38:55 has no hits.

BS05646.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:00 Download gff for BS05646.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 1..996 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:47 Download gff for BS05646.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 106..1112 17..1024 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:33 Download gff for BS05646.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 99..1094 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:00 Download gff for BS05646.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 106..1112 17..1024 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:59 Download gff for BS05646.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 99..1094 17..1012 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:59 Download gff for BS05646.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17473588..17474583 17..1012 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:33 Download gff for BS05646.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17473588..17474583 17..1012 100   Plus

BS05646.pep Sequence

Translation from 16 to 1011

> BS05646.pep
MPDAVQQSFVRSFIDYLKKQGDVMSPDQTESIEVAIQCLQAAFDLGDDVE
AAPAAAGEEQATTQSSSTASAPDDDAVASGSAGIGAAAAAVPNNIDMFEL
FQSLYTERNPESLALAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNP
IFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNF
EKAEQAYAKAIELEPDNEVYKSNLEAARNARNQPPQTGRLREDLINMLSQ
PMVRNLFNNAEIDVEQLLSMLQNPMIMNTIRQQFGGGNAPTLPNDMVQMI
YNMTSQLTGFPNSNANPGNEQQPGNQPPPST*

BS05646.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt-PB 331 CG5094-PB 1..331 1..331 1702 100 Plus
Sgt-PA 331 CG5094-PA 1..331 1..331 1702 100 Plus
Hop-PA 490 CG2720-PA 306..485 109..287 212 29 Plus
Hop-PA 490 CG2720-PA 7..107 119..219 182 32.7 Plus
CG18472-PA 469 CG18472-PA 224..339 111..225 175 32.8 Plus
unc-45-PA 947 CG2708-PA 6..143 109..237 167 32.6 Plus