Clone Sequence Records
BS05646.3prime Sequence
950 bp (835 high quality bases) assembled on 2005-12-02
> BS05646.3prime
ATGGTCTAGAAAGCTTCTAGGTGCTCGGTGGTGGCTGATTGCCCGGCTGC
TGTTCATTGCCAGGATTTGCGTTCGAATTGGGAAAGCCAGTCAATTGGCT
GGTCATGTTATAGATCATTTGCACCATGTCATTGGGCAGGGTCGGGGCAT
TGCCGCCGCCGAACTGCTGGCGAATGGTGTTCATGATCATTGGATTCTGA
AGCATCGACAGCAGCTGCTCCACGTCGATCTCGGCGTTGTTGAACAAATT
CCTAACCATTGGCTGGGACAGCATGTTGATTAGGTCTTCCCTTAATCGCC
CCGTTTGGGGCGGCTGGTTCCTGGCGTTTCTGGCCGCTTCCAGGTTGCTC
TTGTACACCTCGTTGTCCGGTTCCAGCTCGATGGCCTTGGCGTAGGCCTG
TTCCGCCTTCTCGAAATTGCCCATGTTGGAGTACGCCACGCCCAGGCGGC
AGTACGCCTTGCTGTAGTTGTTGTTGTACACCAGGGCGGACTTGCAATCG
GTTACGGCGCGTTCGTTCTCACCCAGCCGGATGTGGGCCGCAGCCCGATT
GCAGTAGAAGATCGGATTCTTGGGATCGAAGGCGATGGCACGATTGTACT
GCAGCAGTGCTTCATTGTACTTGTTCTCCTTCATCAGCCGGTTGCCCTCG
TTCTTGATGGATTCGGCCAGGGCCAGGGATTCCGGATTGCGTTCTGTATA
CAGCGACTGGAAGAGCTCGAACATGTCAATGTTATTGGGAACGGCGGCGG
CGGCGGCGCCGATACCAGCACTTCCGCTGGCCACCGCATCATCGTCCGGT
GCGCTCGCAGTGCTGCTGCTCTGTGTGGTGGCCTGCTCCCTCACAGCCGC
AGCCGGCGCTGCCTCCACATCATCGCCCAAGTCAAAGGCCGCCTGCAGGC
ACTGGATCGCCACCTCGATGCTTTCGGTCTGGTCGGCGACATCACGTCCC
BS05646.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5094-PA | 996 | Sgt-RA | 174..996 | 839..17 | 4115 | 100 | Minus |
CG5094-PA | 996 | Sgt-RA | 79..169 | 934..844 | 455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgt-RB | 1463 | CG5094-RB | 339..1276 | 950..14 | 4620 | 99.7 | Minus |
Sgt-RA | 1284 | CG5094-RA | 160..1097 | 950..14 | 4620 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17473649..17474586 | 950..14 | 4580 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:13:27 has no hits.
BS05646.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:43 Download gff for
BS05646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-PA | 62..996 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:37 Download gff for
BS05646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5094-PA | 62..996 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:46:46 Download gff for
BS05646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-RA | 160..1105 | 5..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:44 Download gff for
BS05646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-RA | 160..1105 | 5..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:44 Download gff for
BS05646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17473649..17474594 | 5..950 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:46:46 Download gff for
BS05646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17473649..17474594 | 5..950 | 99 | | Minus |
BS05646.5prime Sequence
826 bp (776 high quality bases) assembled on 2005-12-02
> BS05646.5prime
GAAGTTATCAGTCGACATGCCGGACGCAGTGCAGCAGAGTTTCGTGCGTA
GCTTCATTGACTACCTGAAGAAGCAGGGGGACGTGATGTCGCCGGACCAG
ACCGAAAGCATCGAGGTGGCGATCCAGTGCCTGCAGGCGGCCTTTGACTT
GGGCGATGATGTGGAGGCAGCGCCGGCTGCGGCTGGTGAGGAGCAGGCCA
CCACACAGAGCAGCAGCACTGCGAGCGCACCGGACGATGATGCGGTGGCC
AGCGGAAGTGCTGGTATCGGCGCCGCCGCCGCCGCCGTTCCCAATAACAT
TGACATGTTCGAGCTCTTCCAGTCGCTGTATACAGAACGCAATCCGGAAT
CCCTGGCCCTGGCCGAATCCATCAAGAACGAGGGCAACCGGCTGATGAAG
GAGAACAAGTACAATGAAGCACTGCTGCAGTACAATCGTGCCATCGCCTT
CGATCCCAAGAATCCGATCTTCTACTGCAATCGGGCTGCGGCCCACATCC
GGCTGGGTGAGAACGAACGCGCCGTAACCGATTGCAAGTCCGCCCTGGTG
TACAACAACAACTACAGCAAGGCGTACTGCCGCCTGGGCGTGGCGTACTC
CAACATGGGCAATTTCGAGAAGGCGGAACAGGCCTACGCCAAGGCCATCG
AGCTGGAACCGGACAACGAGGTGTACAAGAGCAACCTGGAAGCGGCCAGA
AACGCCAGGAACCAGCCGCCCCAAACGGGGCGATTAAGGGAAGACCTAAT
CAACATGCTGTCCCAGCCAATGGTTAGGGAATTTGTTCAACACGCCGAGA
TCGACGTGGAGCAGCTGCTGTCGATG
BS05646.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5094-PA | 996 | Sgt-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
CG5094-PA | 996 | Sgt-RA | 776..810 | 792..826 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgt-RB | 1463 | CG5094-RB | 278..1087 | 17..826 | 4005 | 99.8 | Plus |
Sgt-RA | 1284 | CG5094-RA | 99..908 | 17..826 | 4005 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17473588..17474397 | 17..826 | 3955 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:52:37 has no hits.
BS05646.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:44 Download gff for
BS05646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-PA | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:38 Download gff for
BS05646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5094-PA | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:27:06 Download gff for
BS05646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-RA | 99..908 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:41 Download gff for
BS05646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-RA | 99..908 | 17..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:41 Download gff for
BS05646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17473588..17474397 | 17..826 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:27:06 Download gff for
BS05646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17473588..17474397 | 17..826 | 99 | | Plus |
BS05646.complete Sequence
1028 bp (1028 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635188
> BS05646.complete
GAAGTTATCAGTCGACATGCCGGACGCAGTGCAGCAGAGTTTCGTGCGTA
GCTTCATTGACTACCTGAAGAAGCAGGGGGACGTGATGTCGCCGGACCAG
ACCGAAAGCATCGAGGTGGCGATCCAGTGCCTGCAGGCGGCCTTTGACTT
GGGCGATGATGTGGAGGCAGCGCCGGCTGCGGCTGGTGAGGAGCAGGCCA
CCACACAGAGCAGCAGCACTGCGAGCGCACCGGACGATGATGCGGTGGCC
AGCGGAAGTGCTGGTATCGGCGCCGCCGCCGCCGCCGTTCCCAATAACAT
TGACATGTTCGAGCTCTTCCAGTCGCTGTATACAGAACGCAATCCGGAAT
CCCTGGCCCTGGCCGAATCCATCAAGAACGAGGGCAACCGGCTGATGAAG
GAGAACAAGTACAATGAAGCACTGCTGCAGTACAATCGTGCCATCGCCTT
CGATCCCAAGAATCCGATCTTCTACTGCAATCGGGCTGCGGCCCACATCC
GGCTGGGTGAGAACGAACGCGCCGTAACCGATTGCAAGTCCGCCCTGGTG
TACAACAACAACTACAGCAAGGCGTACTGCCGCCTGGGCGTGGCGTACTC
CAACATGGGCAATTTCGAGAAGGCGGAACAGGCCTACGCCAAGGCCATCG
AGCTGGAACCGGACAACGAGGTGTACAAGAGCAACCTGGAAGCGGCCAGA
AACGCCAGGAACCAGCCGCCCCAAACGGGGCGATTAAGGGAAGACCTAAT
CAACATGCTGTCCCAGCCAATGGTTAGGAATTTGTTCAACAACGCCGAGA
TCGACGTGGAGCAGCTGCTGTCGATGCTTCAGAATCCAATGATCATGAAC
ACCATTCGCCAGCAGTTCGGCGGCGGCAATGCCCCGACCCTGCCCAATGA
CATGGTGCAAATGATCTATAACATGACCAGCCAATTGACTGGCTTTCCCA
ATTCGAACGCAAATCCTGGCAATGAACAGCAGCCGGGCAATCAGCCACCA
CCGAGCACCTAGAAGCTTTCTAGACCAT
BS05646.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgt-RB | 996 | CG5094-PB | 1..996 | 17..1012 | 4980 | 100 | Plus |
Sgt-RA | 996 | CG5094-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgt-RB | 1463 | CG5094-RB | 278..1276 | 17..1015 | 4995 | 100 | Plus |
Sgt-RA | 1284 | CG5094-RA | 99..1097 | 17..1015 | 4995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17473588..17474586 | 17..1015 | 4995 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:38:55 has no hits.
BS05646.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:00 Download gff for
BS05646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-RA | 1..996 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:47 Download gff for
BS05646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-RA | 106..1112 | 17..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:33 Download gff for
BS05646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-RA | 99..1094 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:00 Download gff for
BS05646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-RA | 106..1112 | 17..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:59 Download gff for
BS05646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-RA | 99..1094 | 17..1012 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:59 Download gff for
BS05646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17473588..17474583 | 17..1012 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:33 Download gff for
BS05646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17473588..17474583 | 17..1012 | 100 | | Plus |
BS05646.pep Sequence
Translation from 16 to 1011
> BS05646.pep
MPDAVQQSFVRSFIDYLKKQGDVMSPDQTESIEVAIQCLQAAFDLGDDVE
AAPAAAGEEQATTQSSSTASAPDDDAVASGSAGIGAAAAAVPNNIDMFEL
FQSLYTERNPESLALAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNP
IFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNF
EKAEQAYAKAIELEPDNEVYKSNLEAARNARNQPPQTGRLREDLINMLSQ
PMVRNLFNNAEIDVEQLLSMLQNPMIMNTIRQQFGGGNAPTLPNDMVQMI
YNMTSQLTGFPNSNANPGNEQQPGNQPPPST*
BS05646.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgt-PB | 331 | CG5094-PB | 1..331 | 1..331 | 1702 | 100 | Plus |
Sgt-PA | 331 | CG5094-PA | 1..331 | 1..331 | 1702 | 100 | Plus |
Hop-PA | 490 | CG2720-PA | 306..485 | 109..287 | 212 | 29 | Plus |
Hop-PA | 490 | CG2720-PA | 7..107 | 119..219 | 182 | 32.7 | Plus |
CG18472-PA | 469 | CG18472-PA | 224..339 | 111..225 | 175 | 32.8 | Plus |
unc-45-PA | 947 | CG2708-PA | 6..143 | 109..237 | 167 | 32.6 | Plus |