Clone Sequence Records
BS05647.3prime Sequence
894 bp (761 high quality bases) assembled on 2005-12-02
> BS05647.3prime
ATGGTCTAGAAAGCTTTTACTGATTATTTGCTCTTCGGTACCAGAAACGT
GCCCGAAAGTCGTCGGAGCAGGTGAGGAAAGCAGGACCATTGGGCGAATG
CGTAATATAGCGGACAGGTCCGTTGTGTCCAAGCGAGTTAAGGGTCAGGC
GGCAGCCGTTACGGGAGTTCCACGAGCAAAGCGAAGTGGTGGCCTCGTCG
GGGAAAAGCACGTAATCCTCTGTGTGGTTGAATACAGCCTCTGTCTGGTG
CTCCTGCTTGCCGGTGGTTCCAGCGCCCGTGTACGTCTGAATGGGACGAC
TGGTACACAGCTCCCACAGATAAACCAGTGAATCCATACCGGAAGATAGG
AGGTACTTTCCATTCCGCGTAAACTCCAGTGAGCATATTGCCGCTCCGCC
ATGCGCCTCGGCAATGGTGTTGATGCACCGCCCGCTGATCCCATCCCATA
TTTTGATGTCACCATCATAGCTGCCTGTGGCGTAGAGTTTCCCCGTGGGC
GAATATTTCACGCAAGTAACTCCAGCCTTGTGCTGCTGCGAGGGAATGGC
ACTCACGAAGCATTGGGTGGTGGCCACATCGTAGACCCGCAAGACGTTAT
GTTCCGTTCCGATGGCTACGTAGTCACCAGTAGGATGAAAAGACAGGCAC
AGCACCGGCTCGCAGTCGGTGAACACCTTGTGGGCCTTCTTTACCGAAGG
CTTGGCAATGTCAAACAACTTAACAGTGCCATCGCGCGAGGCGGAGGCCA
GGATGTGCTCCTTGGGATGGAACTCCAGGTAAGACACTTCATCAGTGTGA
TCATAGAGCGTGCGAATCACTGGATGGCCTTGTTGTTCCCTGCCCGGCTC
GATATCTTCGGGCGCAGACTTCGCCAGCATCCGCTCCACGTCCA
BS05647.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2261-PA | 1275 | CstF-50-RA | 398..1275 | 894..17 | 4390 | 100 | Minus |
CG2261-PB | 957 | CstF-50-RB | 398..936 | 894..356 | 2695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CstF-50-RA | 1407 | CG2261-RA | 481..1359 | 894..16 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31735945..31736483 | 356..894 | 2695 | 100 | Plus |
3R | 32079331 | 3R | 31735551..31735892 | 16..357 | 1710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:53:55 has no hits.
BS05647.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:45 Download gff for
BS05647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2261-PA | 399..1275 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:39 Download gff for
BS05647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2261-PA | 399..1275 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:02 Download gff for
BS05647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CstF-50-RA | 482..1359 | 16..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:05 Download gff for
BS05647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CstF-50-RA | 482..1359 | 16..893 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:05 Download gff for
BS05647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31735551..31735890 | 16..355 | 100 | <- | Plus |
3R | 31735945..31736482 | 356..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:02 Download gff for
BS05647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27561273..27561612 | 16..355 | 100 | <- | Plus |
arm_3R | 27561667..27562204 | 356..893 | 100 | | Plus |
BS05647.5prime Sequence
981 bp (760 high quality bases) assembled on 2005-12-02
> BS05647.5prime
GAAGTTATCAGTCGACATGCGTGATGAGATTTTGGACCCCAGTAACCTAG
TGAAGAACCGGGAGATACTCTACCGACTGATGATCAGCCAGCTGATGTAC
GACGGCCTGGAGAAGTTCGCCATGGAGCTGTCCATGCTGGTGAAGGCGGA
CCAGTGCGCTCCCAGTGAACGCCTGCTGCACGTAATGATTGCAGGGATGC
AGACGCTGAGCGACAAGGACAAAACCAACTCGGATGATGTGCTGCCCGGC
ATAGACTTGGAATTCGAGCCGGAGGCTTCGGCCTTGGCCCCGGAACCACA
TTCCTACGAAACCGCGTATGTGACCTCGCACAAGCAGGCCTGTCGCGCCG
GCGCCTTCAGTTGCGATGGTTCCCTGGTGGCCACCGGGAGCGTGGATGCC
AGCATCAAGATTCTGGACGTGGAGCGGATGCTGGCGAAGTCTGCGCCCGA
AGATATCGAGCCGGGCAGGGAACAACAAGGCCATCCAGTGATTCGCACGC
TCTATGATCACACTGATGAAGTGTCTTACCTGGAGTTCCATCCCAAGGAG
CACATCCTGGCCTCCGCCTCGCGCGATGGCACTGTTAAGTTGTTTGACAT
TGCCAAGCCTTCGGTAAAGAAGGCCCACAAGGTGTTCACCGACTGCGAGC
CGGTGCTGTGCCTGTCTTTTCATCCTACTGGTGACTACGTAGCCATCGGA
ACGGAACATAACGTCTTGCGGGTCTACGATGTGGCCACCACCCAATGCTT
CGTGAGTGCCATTCCCTCGCAGCAGCACAAGGCTGGAGTTACTTGCGTGA
AATATTCGCCCACGGGGGAACTCTACGCCACAGGCAGCTATGATGGTGAC
ATCAAATATGGGATGGGATCAGCGGGCGGTGCATCAACACCATTGGCGAG
GCGCATGGCGGAGCGGCATATGCTCACTGGAATTTACGCGGAATGGAAAG
TACCTCCTATCTTCCGGTATGGATTCACTGG
BS05647.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2261-PA | 1275 | CstF-50-RA | 1..840 | 17..856 | 4175 | 99.8 | Plus |
CG2261-PB | 957 | CstF-50-RB | 1..840 | 17..856 | 4175 | 99.8 | Plus |
CG2261-PA | 1275 | CstF-50-RA | 839..903 | 854..918 | 300 | 98.4 | Plus |
CG2261-PB | 957 | CstF-50-RB | 839..903 | 854..918 | 300 | 98.4 | Plus |
CG2261-PA | 1275 | CstF-50-RA | 904..967 | 918..981 | 295 | 98.4 | Plus |
CG2261-PB | 957 | CstF-50-RB | 904..936 | 918..950 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CstF-50-RA | 1407 | CG2261-RA | 83..1050 | 16..981 | 4745 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31735945..31736881 | 950..16 | 4540 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:47:39 has no hits.
BS05647.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:46 Download gff for
BS05647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2261-PB | 1..936 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:41 Download gff for
BS05647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2261-PB | 1..936 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:21:48 Download gff for
BS05647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CstF-50-RA | 77..1050 | 10..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:21:37 Download gff for
BS05647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CstF-50-RA | 77..1050 | 10..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:21:37 Download gff for
BS05647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31735860..31735890 | 951..981 | 100 | <- | Minus |
3R | 31735945..31736887 | 10..950 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:21:48 Download gff for
BS05647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27561582..27561612 | 951..981 | 100 | <- | Minus |
arm_3R | 27561667..27562609 | 10..950 | 99 | | Minus |
BS05647.complete Sequence
1307 bp (1307 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635189
> BS05647.complete
GAAGTTATCAGTCGACATGCGTGATGAGATTTTGGACCCCAGTAACCTAG
TGAAGAACCGGGAGATACTCTACCGACTGATGATCAGCCAGCTGATGTAC
GACGGCCTGGAGAAGTTCGCCATGGAGCTGTCCATGCTGGTGAAGGCGGA
CCAGTGCGCTCCCAGTGAACGCCTGCTGCACGTAATGATTGCAGGGATGC
AGACGCTGAGCGACAAGGACAAAACCAACTCGGATGATGTGCTGCCCGGC
ATAGACTTGGAATTCGAGCCGGAGGCTTCGGCCTTGGCCCCGGAACCACA
TTCCTACGAAACCGCGTATGTGACCTCGCACAAGCAGGCCTGTCGCGCCG
GCGCCTTCAGTTGCGATGGTTCCCTGGTGGCCACCGGGAGCGTGGATGCC
AGCATCAAGATTCTGGACGTGGAGCGGATGCTGGCGAAGTCTGCGCCCGA
AGATATCGAGCCGGGCAGGGAACAACAAGGCCATCCAGTGATTCGCACGC
TCTATGATCACACTGATGAAGTGTCTTACCTGGAGTTCCATCCCAAGGAG
CACATCCTGGCCTCCGCCTCGCGCGATGGCACTGTTAAGTTGTTTGACAT
TGCCAAGCCTTCGGTAAAGAAGGCCCACAAGGTGTTCACCGACTGCGAGC
CGGTGCTGTGCCTGTCTTTTCATCCTACTGGTGACTACGTAGCCATCGGA
ACGGAACATAACGTCTTGCGGGTCTACGATGTGGCCACCACCCAATGCTT
CGTGAGTGCCATTCCCTCGCAGCAGCACAAGGCTGGAGTTACTTGCGTGA
AATATTCGCCCACGGGGAAACTCTACGCCACAGGCAGCTATGATGGTGAC
ATCAAAATATGGGATGGGATCAGCGGGCGGTGCATCAACACCATTGCCGA
GGCGCATGGCGGAGCGGCAATATGCTCACTGGAGTTTACGCGGAATGGAA
AGTACCTCCTATCTTCCGGTATGGATTCACTGGTTTATCTGTGGGAGCTG
TGTACCAGTCGTCCCATTCAGACGTACACGGGCGCTGGAACCACCGGCAA
GCAGGAGCACCAGACAGAGGCTGTATTCAACCACACAGAGGATTACGTGC
TTTTCCCCGACGAGGCCACCACTTCGCTTTGCTCGTGGAACTCCCGTAAC
GGCTGCCGCCTGACCCTTAACTCGCTTGGACACAACGGACCTGTCCGCTA
TATTACGCATTCGCCCAATGGTCCTGCTTTCCTCACCTGCTCCGACGACT
TTCGGGCACGTTTCTGGTACCGAAGAGCAAATAATCAGTAAAAGCTTTCT
AGACCAT
BS05647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CstF-50-RA | 1275 | CG2261-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CstF-50-RA | 1407 | CG2261-RA | 83..1359 | 16..1292 | 6385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31735945..31736881 | 952..16 | 4685 | 100 | Minus |
3R | 32079331 | 3R | 31735551..31735892 | 1292..951 | 1710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:55:39 has no hits.
BS05647.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:01 Download gff for
BS05647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CstF-50-RA | 1..1275 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:49 Download gff for
BS05647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CstF-50-RA | 56..1338 | 10..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:38 Download gff for
BS05647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CstF-50-RA | 84..1356 | 17..1289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:02 Download gff for
BS05647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CstF-50-RA | 84..1356 | 17..1289 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:02 Download gff for
BS05647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31735554..31735890 | 953..1289 | 100 | <- | Minus |
3R | 31735945..31736880 | 17..952 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:38 Download gff for
BS05647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27561276..27561612 | 953..1289 | 100 | <- | Minus |
arm_3R | 27561667..27562602 | 17..952 | 100 | | Minus |
BS05647.pep Sequence
Translation from 16 to 1290
> BS05647.pep
MRDEILDPSNLVKNREILYRLMISQLMYDGLEKFAMELSMLVKADQCAPS
ERLLHVMIAGMQTLSDKDKTNSDDVLPGIDLEFEPEASALAPEPHSYETA
YVTSHKQACRAGAFSCDGSLVATGSVDASIKILDVERMLAKSAPEDIEPG
REQQGHPVIRTLYDHTDEVSYLEFHPKEHILASASRDGTVKLFDIAKPSV
KKAHKVFTDCEPVLCLSFHPTGDYVAIGTEHNVLRVYDVATTQCFVSAIP
SQQHKAGVTCVKYSPTGKLYATGSYDGDIKIWDGISGRCINTIAEAHGGA
AICSLEFTRNGKYLLSSGMDSLVYLWELCTSRPIQTYTGAGTTGKQEHQT
EAVFNHTEDYVLFPDEATTSLCSWNSRNGCRLTLNSLGHNGPVRYITHSP
NGPAFLTCSDDFRARFWYRRANNQ*
BS05647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CstF-50-PA | 424 | CG2261-PA | 1..424 | 1..424 | 2250 | 100 | Plus |
wds-PB | 361 | CG17437-PB | 54..281 | 88..339 | 246 | 26.6 | Plus |
wds-PA | 361 | CG17437-PA | 54..281 | 88..339 | 246 | 26.6 | Plus |
wds-PB | 361 | CG17437-PB | 110..326 | 102..339 | 232 | 25.4 | Plus |
wds-PA | 361 | CG17437-PA | 110..326 | 102..339 | 232 | 25.4 | Plus |
CG12325-PB | 949 | CG12325-PB | 310..531 | 168..400 | 218 | 26.9 | Plus |
CG12325-PA | 949 | CG12325-PA | 310..531 | 168..400 | 218 | 26.9 | Plus |
wds-PB | 361 | CG17437-PB | 67..268 | 161..417 | 175 | 22.3 | Plus |
wds-PA | 361 | CG17437-PA | 67..268 | 161..417 | 175 | 22.3 | Plus |