Clone BS05647 Report

Search the DGRC for BS05647

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCstF-50-RA
Protein status:BS05647.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05647.3prime Sequence

894 bp (761 high quality bases) assembled on 2005-12-02

> BS05647.3prime
ATGGTCTAGAAAGCTTTTACTGATTATTTGCTCTTCGGTACCAGAAACGT
GCCCGAAAGTCGTCGGAGCAGGTGAGGAAAGCAGGACCATTGGGCGAATG
CGTAATATAGCGGACAGGTCCGTTGTGTCCAAGCGAGTTAAGGGTCAGGC
GGCAGCCGTTACGGGAGTTCCACGAGCAAAGCGAAGTGGTGGCCTCGTCG
GGGAAAAGCACGTAATCCTCTGTGTGGTTGAATACAGCCTCTGTCTGGTG
CTCCTGCTTGCCGGTGGTTCCAGCGCCCGTGTACGTCTGAATGGGACGAC
TGGTACACAGCTCCCACAGATAAACCAGTGAATCCATACCGGAAGATAGG
AGGTACTTTCCATTCCGCGTAAACTCCAGTGAGCATATTGCCGCTCCGCC
ATGCGCCTCGGCAATGGTGTTGATGCACCGCCCGCTGATCCCATCCCATA
TTTTGATGTCACCATCATAGCTGCCTGTGGCGTAGAGTTTCCCCGTGGGC
GAATATTTCACGCAAGTAACTCCAGCCTTGTGCTGCTGCGAGGGAATGGC
ACTCACGAAGCATTGGGTGGTGGCCACATCGTAGACCCGCAAGACGTTAT
GTTCCGTTCCGATGGCTACGTAGTCACCAGTAGGATGAAAAGACAGGCAC
AGCACCGGCTCGCAGTCGGTGAACACCTTGTGGGCCTTCTTTACCGAAGG
CTTGGCAATGTCAAACAACTTAACAGTGCCATCGCGCGAGGCGGAGGCCA
GGATGTGCTCCTTGGGATGGAACTCCAGGTAAGACACTTCATCAGTGTGA
TCATAGAGCGTGCGAATCACTGGATGGCCTTGTTGTTCCCTGCCCGGCTC
GATATCTTCGGGCGCAGACTTCGCCAGCATCCGCTCCACGTCCA

BS05647.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2261-PA 1275 CstF-50-RA 398..1275 894..17 4390 100 Minus
CG2261-PB 957 CstF-50-RB 398..936 894..356 2695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
CstF-50-RA 1407 CG2261-RA 481..1359 894..16 4395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31735945..31736483 356..894 2695 100 Plus
3R 32079331 3R 31735551..31735892 16..357 1710 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:53:55 has no hits.

BS05647.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:45 Download gff for BS05647.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2261-PA 399..1275 17..893 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:39 Download gff for BS05647.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2261-PA 399..1275 17..893 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:02 Download gff for BS05647.3prime
Subject Subject Range Query Range Percent Splice Strand
CstF-50-RA 482..1359 16..893 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:05 Download gff for BS05647.3prime
Subject Subject Range Query Range Percent Splice Strand
CstF-50-RA 482..1359 16..893 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:05 Download gff for BS05647.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31735551..31735890 16..355 100 <- Plus
3R 31735945..31736482 356..893 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:02 Download gff for BS05647.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27561273..27561612 16..355 100 <- Plus
arm_3R 27561667..27562204 356..893 100   Plus

BS05647.5prime Sequence

981 bp (760 high quality bases) assembled on 2005-12-02

> BS05647.5prime
GAAGTTATCAGTCGACATGCGTGATGAGATTTTGGACCCCAGTAACCTAG
TGAAGAACCGGGAGATACTCTACCGACTGATGATCAGCCAGCTGATGTAC
GACGGCCTGGAGAAGTTCGCCATGGAGCTGTCCATGCTGGTGAAGGCGGA
CCAGTGCGCTCCCAGTGAACGCCTGCTGCACGTAATGATTGCAGGGATGC
AGACGCTGAGCGACAAGGACAAAACCAACTCGGATGATGTGCTGCCCGGC
ATAGACTTGGAATTCGAGCCGGAGGCTTCGGCCTTGGCCCCGGAACCACA
TTCCTACGAAACCGCGTATGTGACCTCGCACAAGCAGGCCTGTCGCGCCG
GCGCCTTCAGTTGCGATGGTTCCCTGGTGGCCACCGGGAGCGTGGATGCC
AGCATCAAGATTCTGGACGTGGAGCGGATGCTGGCGAAGTCTGCGCCCGA
AGATATCGAGCCGGGCAGGGAACAACAAGGCCATCCAGTGATTCGCACGC
TCTATGATCACACTGATGAAGTGTCTTACCTGGAGTTCCATCCCAAGGAG
CACATCCTGGCCTCCGCCTCGCGCGATGGCACTGTTAAGTTGTTTGACAT
TGCCAAGCCTTCGGTAAAGAAGGCCCACAAGGTGTTCACCGACTGCGAGC
CGGTGCTGTGCCTGTCTTTTCATCCTACTGGTGACTACGTAGCCATCGGA
ACGGAACATAACGTCTTGCGGGTCTACGATGTGGCCACCACCCAATGCTT
CGTGAGTGCCATTCCCTCGCAGCAGCACAAGGCTGGAGTTACTTGCGTGA
AATATTCGCCCACGGGGGAACTCTACGCCACAGGCAGCTATGATGGTGAC
ATCAAATATGGGATGGGATCAGCGGGCGGTGCATCAACACCATTGGCGAG
GCGCATGGCGGAGCGGCATATGCTCACTGGAATTTACGCGGAATGGAAAG
TACCTCCTATCTTCCGGTATGGATTCACTGG

BS05647.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2261-PA 1275 CstF-50-RA 1..840 17..856 4175 99.8 Plus
CG2261-PB 957 CstF-50-RB 1..840 17..856 4175 99.8 Plus
CG2261-PA 1275 CstF-50-RA 839..903 854..918 300 98.4 Plus
CG2261-PB 957 CstF-50-RB 839..903 854..918 300 98.4 Plus
CG2261-PA 1275 CstF-50-RA 904..967 918..981 295 98.4 Plus
CG2261-PB 957 CstF-50-RB 904..936 918..950 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
CstF-50-RA 1407 CG2261-RA 83..1050 16..981 4745 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31735945..31736881 950..16 4540 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 08:47:39 has no hits.

BS05647.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:46 Download gff for BS05647.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2261-PB 1..936 17..950 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:41 Download gff for BS05647.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2261-PB 1..936 17..950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:21:48 Download gff for BS05647.5prime
Subject Subject Range Query Range Percent Splice Strand
CstF-50-RA 77..1050 10..981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:21:37 Download gff for BS05647.5prime
Subject Subject Range Query Range Percent Splice Strand
CstF-50-RA 77..1050 10..981 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:21:37 Download gff for BS05647.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31735860..31735890 951..981 100 <- Minus
3R 31735945..31736887 10..950 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:21:48 Download gff for BS05647.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27561582..27561612 951..981 100 <- Minus
arm_3R 27561667..27562609 10..950 99   Minus

BS05647.complete Sequence

1307 bp (1307 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635189

> BS05647.complete
GAAGTTATCAGTCGACATGCGTGATGAGATTTTGGACCCCAGTAACCTAG
TGAAGAACCGGGAGATACTCTACCGACTGATGATCAGCCAGCTGATGTAC
GACGGCCTGGAGAAGTTCGCCATGGAGCTGTCCATGCTGGTGAAGGCGGA
CCAGTGCGCTCCCAGTGAACGCCTGCTGCACGTAATGATTGCAGGGATGC
AGACGCTGAGCGACAAGGACAAAACCAACTCGGATGATGTGCTGCCCGGC
ATAGACTTGGAATTCGAGCCGGAGGCTTCGGCCTTGGCCCCGGAACCACA
TTCCTACGAAACCGCGTATGTGACCTCGCACAAGCAGGCCTGTCGCGCCG
GCGCCTTCAGTTGCGATGGTTCCCTGGTGGCCACCGGGAGCGTGGATGCC
AGCATCAAGATTCTGGACGTGGAGCGGATGCTGGCGAAGTCTGCGCCCGA
AGATATCGAGCCGGGCAGGGAACAACAAGGCCATCCAGTGATTCGCACGC
TCTATGATCACACTGATGAAGTGTCTTACCTGGAGTTCCATCCCAAGGAG
CACATCCTGGCCTCCGCCTCGCGCGATGGCACTGTTAAGTTGTTTGACAT
TGCCAAGCCTTCGGTAAAGAAGGCCCACAAGGTGTTCACCGACTGCGAGC
CGGTGCTGTGCCTGTCTTTTCATCCTACTGGTGACTACGTAGCCATCGGA
ACGGAACATAACGTCTTGCGGGTCTACGATGTGGCCACCACCCAATGCTT
CGTGAGTGCCATTCCCTCGCAGCAGCACAAGGCTGGAGTTACTTGCGTGA
AATATTCGCCCACGGGGAAACTCTACGCCACAGGCAGCTATGATGGTGAC
ATCAAAATATGGGATGGGATCAGCGGGCGGTGCATCAACACCATTGCCGA
GGCGCATGGCGGAGCGGCAATATGCTCACTGGAGTTTACGCGGAATGGAA
AGTACCTCCTATCTTCCGGTATGGATTCACTGGTTTATCTGTGGGAGCTG
TGTACCAGTCGTCCCATTCAGACGTACACGGGCGCTGGAACCACCGGCAA
GCAGGAGCACCAGACAGAGGCTGTATTCAACCACACAGAGGATTACGTGC
TTTTCCCCGACGAGGCCACCACTTCGCTTTGCTCGTGGAACTCCCGTAAC
GGCTGCCGCCTGACCCTTAACTCGCTTGGACACAACGGACCTGTCCGCTA
TATTACGCATTCGCCCAATGGTCCTGCTTTCCTCACCTGCTCCGACGACT
TTCGGGCACGTTTCTGGTACCGAAGAGCAAATAATCAGTAAAAGCTTTCT
AGACCAT

BS05647.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
CstF-50-RA 1275 CG2261-PA 1..1275 17..1291 6375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
CstF-50-RA 1407 CG2261-RA 83..1359 16..1292 6385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31735945..31736881 952..16 4685 100 Minus
3R 32079331 3R 31735551..31735892 1292..951 1710 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:55:39 has no hits.

BS05647.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:01 Download gff for BS05647.complete
Subject Subject Range Query Range Percent Splice Strand
CstF-50-RA 1..1275 17..1291 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:49 Download gff for BS05647.complete
Subject Subject Range Query Range Percent Splice Strand
CstF-50-RA 56..1338 10..1292 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:38 Download gff for BS05647.complete
Subject Subject Range Query Range Percent Splice Strand
CstF-50-RA 84..1356 17..1289 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:02 Download gff for BS05647.complete
Subject Subject Range Query Range Percent Splice Strand
CstF-50-RA 84..1356 17..1289 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:02 Download gff for BS05647.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31735554..31735890 953..1289 100 <- Minus
3R 31735945..31736880 17..952 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:38 Download gff for BS05647.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27561276..27561612 953..1289 100 <- Minus
arm_3R 27561667..27562602 17..952 100   Minus

BS05647.pep Sequence

Translation from 16 to 1290

> BS05647.pep
MRDEILDPSNLVKNREILYRLMISQLMYDGLEKFAMELSMLVKADQCAPS
ERLLHVMIAGMQTLSDKDKTNSDDVLPGIDLEFEPEASALAPEPHSYETA
YVTSHKQACRAGAFSCDGSLVATGSVDASIKILDVERMLAKSAPEDIEPG
REQQGHPVIRTLYDHTDEVSYLEFHPKEHILASASRDGTVKLFDIAKPSV
KKAHKVFTDCEPVLCLSFHPTGDYVAIGTEHNVLRVYDVATTQCFVSAIP
SQQHKAGVTCVKYSPTGKLYATGSYDGDIKIWDGISGRCINTIAEAHGGA
AICSLEFTRNGKYLLSSGMDSLVYLWELCTSRPIQTYTGAGTTGKQEHQT
EAVFNHTEDYVLFPDEATTSLCSWNSRNGCRLTLNSLGHNGPVRYITHSP
NGPAFLTCSDDFRARFWYRRANNQ*

BS05647.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
CstF-50-PA 424 CG2261-PA 1..424 1..424 2250 100 Plus
wds-PB 361 CG17437-PB 54..281 88..339 246 26.6 Plus
wds-PA 361 CG17437-PA 54..281 88..339 246 26.6 Plus
wds-PB 361 CG17437-PB 110..326 102..339 232 25.4 Plus
wds-PA 361 CG17437-PA 110..326 102..339 232 25.4 Plus
CG12325-PB 949 CG12325-PB 310..531 168..400 218 26.9 Plus
CG12325-PA 949 CG12325-PA 310..531 168..400 218 26.9 Plus
wds-PB 361 CG17437-PB 67..268 161..417 175 22.3 Plus
wds-PA 361 CG17437-PA 67..268 161..417 175 22.3 Plus