Clone BS05648 Report

Search the DGRC for BS05648

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptScsalpha-RA
Protein status:BS05648.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05648.5prime Sequence

706 bp (703 high quality bases) assembled on 2005-12-02

> BS05648.5prime
GAAGTTATCAGTCGACATGGCTGCTTCAATGAGGGCGCTGCTGAAAGTGC
GAGATGGCTTCGTGGCCGGAGTGCGCTGCAATTCGCAGTACAACAAGACG
CGCGGCAACTTGAAGCTGAACGGCGATTCGCGGGTGATCTGCCAGGGATT
CACCGGCAAACAGGGCACGTTCCACAGCCAACAGGCTCTGGAGTACGGCA
CCAAGTTGGTCGGCGGCATTTCCCCCAAGAAGGGAGGCACCCAGCATCTG
GGACTGCCCGTCTTCGCTTCGGTGGCGGAGGCCAAGAAGGCCACCGATCC
ACATGCCACCGTCATCTATGTGCCACCACCGGGCGCTGCGGCCGCCATCA
TCGAGGCTCTGGAAGCGGAGATCCCCCTGATCGTTTGCATTACGGAGGGT
GTGCCGCAGCACGACATGGTGAAGGTGAAGCACGCCCTCATCAGCCAGAG
CAAGTCGCGATTGGTGGGTCCCAACTGCCCGGGAATCATCGCCCCCGAAC
AGTGCAAGATCGGCATCATGCCGGGTCACATTCACAAGCGCGGCAAGATC
GGCGTGGTCTCGCGCTCGGGAACCTTGACCTACGAGGCCGTGCACCAGAC
CACGGAGGTGGGTCTGGGCCAGACCCTGTGCGTGGGCATTGGAGGCGATC
CGTTCAACGGAACCGACTTCATCGACTGCCTGGAGGTCTTCCTCAAGGAT
CCCGAG

BS05648.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1065-PA 987 Scsalpha-RA 1..690 17..706 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
Scsalpha-RB 1250 CG1065-RB 109..798 17..706 3450 100 Plus
Scsalpha-RA 1479 CG1065-RA 109..798 17..706 3450 100 Plus
CG6255-RA 1188 CG6255-RA 541..765 452..676 375 77.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3816630..3817080 52..502 2255 100 Plus
3L 28110227 3L 3817434..3817640 500..706 1035 100 Plus
3R 32079331 3R 19462302..19462526 676..452 375 77.8 Minus
3L 28110227 3L 3814319..3814355 17..53 185 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:09:39 has no hits.

BS05648.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:48 Download gff for BS05648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1065-PA 1..690 17..706 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:44 Download gff for BS05648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1065-PA 1..690 17..706 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:55:57 Download gff for BS05648.5prime
Subject Subject Range Query Range Percent Splice Strand
Scsalpha-RA 101..798 9..706 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:46 Download gff for BS05648.5prime
Subject Subject Range Query Range Percent Splice Strand
Scsalpha-RA 101..798 9..706 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:46 Download gff for BS05648.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3817437..3817640 503..706 100   Plus
3L 3814311..3814355 9..53 91 -> Plus
3L 3816632..3817080 54..502 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:55:57 Download gff for BS05648.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3814311..3814355 9..53 91 -> Plus
arm_3L 3816632..3817080 54..502 100 -> Plus
arm_3L 3817437..3817640 503..706 100   Plus

BS05648.3prime Sequence

755 bp (734 high quality bases) assembled on 2005-12-02

> BS05648.3prime
ATGGTCTAGAAAGCTTTTACACTAACTCCAGACGCTTCATCTCCTTGAAG
AGCTCGTGGCCCATTTTGGCAGGACTCCTGGTCACAATGACGCCGGCCTT
CTCCAGGGCGGCGATCTTGTCGTTGGCACCTCCCTTTCCTCCGGAAATGA
TGGCTCCAGCGTGACCCATGCGACGGCCGGGTGGCGCCGACACTCCGGCA
ATGAACGAGACGACAGGCTTGGCCTTGATGCCCGAATTGTACTCGGTCAG
GTAGTCGGCAGCCTTCTCCTCGGCAACGCCTCCGATCTCGCCGATCAGGA
TGATGCCCTTGGTCTCGGGATCCTTGAGGAAGACCTCCAGGCAGTCGATG
AAGTCGGTTCCGTTGAACGGATCGCCTCCAATGCCCACGCACAGGGTCTG
GCCCAGACCCACCTCCGTGGTCTGGTGCACGGCCTCGTAGGTCAAGGTTC
CCGAGCGCGAGACCACGCCGATCTTGCCGCGCTTGTGAATGTGACCCGGC
ATGATGCCGATCTTGCACTGTTCGGGGGCGATGATTCCCGGGCAGTTGGG
ACCCACCAATCGCGACTTGCTCTGGCTGATGAGGGCGTGCTTCACCTTCA
CCATGTCGTGCTGCGGCACACCCTCCGTAATGCAAACGATCAGGGGGATC
TCCGCTTCCAGAGCCTCGATGATGGCGGCCGCAGCGCCCGGTGGTGGCAC
ATAGATGACGGTGGCATGTGGATCGGTGGCCTTCTTGGCCTCCGCCACCA
AAGCG

BS05648.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1065-PA 987 Scsalpha-RA 249..987 755..17 3670 99.8 Minus
CG6255-PA 1029 CG6255-RA 832..908 175..99 135 87 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Scsalpha-RB 1250 CG1065-RB 357..1096 755..16 3685 99.9 Minus
Scsalpha-RA 1479 CG1065-RA 357..1096 755..16 3685 99.9 Minus
CG6255-RA 1188 CG6255-RA 541..1020 568..89 615 75.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3817434..3817722 520..232 1445 100 Minus
3L 28110227 3L 3816843..3817080 755..518 1175 99.6 Minus
3L 28110227 3L 3817783..3818000 233..16 1090 100 Minus
3R 32079331 3R 19462047..19462526 89..568 615 75.2 Plus
Blast to na_te.dros performed on 2015-02-03 13:40:19 has no hits.

BS05648.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:47 Download gff for BS05648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1065-PA 249..987 17..755 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:42 Download gff for BS05648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1065-PA 249..987 17..755 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:02:39 Download gff for BS05648.3prime
Subject Subject Range Query Range Percent Splice Strand
Scsalpha-RA 357..1101 11..755 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:51:23 Download gff for BS05648.3prime
Subject Subject Range Query Range Percent Splice Strand
Scsalpha-RA 357..1101 11..755 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:51:23 Download gff for BS05648.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3816843..3817080 518..755 99 -> Minus
3L 3817437..3817721 233..517 100 -> Minus
3L 3817784..3818005 11..232 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:02:39 Download gff for BS05648.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3816843..3817080 518..755 99 -> Minus
arm_3L 3817437..3817721 233..517 100 -> Minus
arm_3L 3817784..3818005 11..232 98   Minus

BS05648.complete Sequence

1019 bp assembled on 2007-10-17

GenBank Submission: FJ635190

> BS05648.complete
GAAGTTATCAGTCGACATGGCTGCTTCAATGAGGGCGCTGCTGAAAGTGC
GAGATGGCTTCGTGGCCGGAGTGCGCTGCAATTCGCAGTACAACAAGACG
CGCGGCAACTTGAAGCTGAACGGCGATTCGCGGGTGATCTGCCAGGGATT
CACCGGCAAACAGGGCACGTTCCACAGCCAACAGGCTCTGGAGTACGGCA
CCAAGTTGGTCGGCGGCATTTCCCCCAAGAAGGGAGGCACCCAGCATCTG
GGACTGCCCGTCTTCGCTTCGGTGGCGGAGGCCAAGAAGGCCACCGATCC
ACATGCCACCGTCATCTATGTGCCACCACCGGGCGCTGCGGCCGCCATCA
TCGAGGCTCTGGAAGCGGAGATCCCCCTGATCGTTTGCATTACGGAGGGT
GTGCCGCAGCACGACATGGTGAAGGTGAAGCACGCCCTCATCAGCCAGAG
CAAGTCGCGATTGGTGGGTCCCAACTGCCCGGGAATCATCGCCCCCGAAC
AGTGCAAGATCGGCATCATGCCGGGTCACATTCACAAGCGCGGCAAGATC
GGCGTGGTCTCGCGCTCGGGAACCTTGACCTACGAGGCCGTGCACCAGAC
CACGGAGGTGGGTCTGGGCCAGACCCTGTGCGTGGGCATTGGAGGCGATC
CGTTCAACGGAACCGACTTCATCGACTGCCTGGAGGTCTTCCTCAAGGAT
CCCGAGACCAAGGGCATCATCCTGATCGGCGAGATCGGAGGCGTTGCCGA
GGAGAAGGCTGCCGACTACCTGACCGAGTACAATTCGGGCATCAAGGCCA
AGCCTGTCGTCTCGTTCATTGCCGGAGTGTCGGCGCCACCCGGCCGTCGC
ATGGGTCACGCTGGAGCCATCATTTCCGGAGGAAAGGGAGGTGCCAACGA
CAAGATCGCCGCCCTGGAGAAGGCCGGCGTCATTGTGACCAGGAGTCCTG
CCAAAATGGGCCACGAGCTCTTCAAGGAGATGAAGCGTCTGGAGTTAGTG
TAAAAGCTTTCTAGACCAT

BS05648.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
Scsalpha-RB 987 CG1065-PB 1..987 17..1003 4935 100 Plus
Scsalpha-RA 987 CG1065-PA 1..987 17..1003 4935 100 Plus
CG6255-RA 1029 CG6255-PA 439..918 452..931 615 75.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Scsalpha-RB 1250 CG1065-RB 109..1096 17..1004 4940 100 Plus
Scsalpha-RA 1479 CG1065-RA 109..1096 17..1004 4940 100 Plus
CG6255-RA 1188 CG6255-RA 541..1020 452..931 615 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3816630..3817080 52..502 2255 100 Plus
3L 28110227 3L 3817434..3817722 500..788 1445 100 Plus
3L 28110227 3L 3817783..3818000 787..1004 1090 100 Plus
3R 32079331 3R 19462047..19462526 931..452 615 75.2 Minus
3L 28110227 3L 3814319..3814355 17..53 185 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:40:46 has no hits.

BS05648.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:58 Download gff for BS05648.complete
Subject Subject Range Query Range Percent Splice Strand
Scsalpha-RA 1..987 17..1003 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:07 Download gff for BS05648.complete
Subject Subject Range Query Range Percent Splice Strand
Scsalpha-RA 127..1127 9..1009 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:57 Download gff for BS05648.complete
Subject Subject Range Query Range Percent Splice Strand
Scsalpha-RA 109..1093 17..1001 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:13 Download gff for BS05648.complete
Subject Subject Range Query Range Percent Splice Strand
Scsalpha-RA 135..1119 17..1001 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:52 Download gff for BS05648.complete
Subject Subject Range Query Range Percent Splice Strand
Scsalpha-RA 109..1093 17..1001 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:52 Download gff for BS05648.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3814319..3814355 17..53 100 -> Plus
3L 3816632..3817080 54..502 100 -> Plus
3L 3817437..3817721 503..787 100 -> Plus
3L 3817784..3817997 788..1001 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:57 Download gff for BS05648.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3814319..3814355 17..53 100 -> Plus
arm_3L 3816632..3817080 54..502 100 -> Plus
arm_3L 3817437..3817721 503..787 100 -> Plus
arm_3L 3817784..3817997 788..1001 100   Plus

BS05648.pep Sequence

Translation from 16 to 1002

> BS05648.pep
MAASMRALLKVRDGFVAGVRCNSQYNKTRGNLKLNGDSRVICQGFTGKQG
TFHSQQALEYGTKLVGGISPKKGGTQHLGLPVFASVAEAKKATDPHATVI
YVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALISQSKSRLV
GPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGL
GQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEKAAD
YLTEYNSGIKAKPVVSFIAGVSAPPGRRMGHAGAIISGGKGGANDKIAAL
EKAGVIVTRSPAKMGHELFKEMKRLELV*

BS05648.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Scsalpha-PB 328 CG1065-PB 1..328 1..328 1691 100 Plus
Scsalpha-PA 328 CG1065-PA 1..328 1..328 1691 100 Plus
CG6255-PA 342 CG6255-PA 21..329 20..328 1112 67.6 Plus
ATPCL-PF 1095 CG8322-PF 539..799 74..322 211 27.7 Plus
ATPCL-PG 1096 CG8322-PG 540..800 74..322 211 27.7 Plus