Clone Sequence Records
BS05648.5prime Sequence
706 bp (703 high quality bases) assembled on 2005-12-02
> BS05648.5prime
GAAGTTATCAGTCGACATGGCTGCTTCAATGAGGGCGCTGCTGAAAGTGC
GAGATGGCTTCGTGGCCGGAGTGCGCTGCAATTCGCAGTACAACAAGACG
CGCGGCAACTTGAAGCTGAACGGCGATTCGCGGGTGATCTGCCAGGGATT
CACCGGCAAACAGGGCACGTTCCACAGCCAACAGGCTCTGGAGTACGGCA
CCAAGTTGGTCGGCGGCATTTCCCCCAAGAAGGGAGGCACCCAGCATCTG
GGACTGCCCGTCTTCGCTTCGGTGGCGGAGGCCAAGAAGGCCACCGATCC
ACATGCCACCGTCATCTATGTGCCACCACCGGGCGCTGCGGCCGCCATCA
TCGAGGCTCTGGAAGCGGAGATCCCCCTGATCGTTTGCATTACGGAGGGT
GTGCCGCAGCACGACATGGTGAAGGTGAAGCACGCCCTCATCAGCCAGAG
CAAGTCGCGATTGGTGGGTCCCAACTGCCCGGGAATCATCGCCCCCGAAC
AGTGCAAGATCGGCATCATGCCGGGTCACATTCACAAGCGCGGCAAGATC
GGCGTGGTCTCGCGCTCGGGAACCTTGACCTACGAGGCCGTGCACCAGAC
CACGGAGGTGGGTCTGGGCCAGACCCTGTGCGTGGGCATTGGAGGCGATC
CGTTCAACGGAACCGACTTCATCGACTGCCTGGAGGTCTTCCTCAAGGAT
CCCGAG
BS05648.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1065-PA | 987 | Scsalpha-RA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scsalpha-RB | 1250 | CG1065-RB | 109..798 | 17..706 | 3450 | 100 | Plus |
Scsalpha-RA | 1479 | CG1065-RA | 109..798 | 17..706 | 3450 | 100 | Plus |
CG6255-RA | 1188 | CG6255-RA | 541..765 | 452..676 | 375 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3816630..3817080 | 52..502 | 2255 | 100 | Plus |
3L | 28110227 | 3L | 3817434..3817640 | 500..706 | 1035 | 100 | Plus |
3R | 32079331 | 3R | 19462302..19462526 | 676..452 | 375 | 77.8 | Minus |
3L | 28110227 | 3L | 3814319..3814355 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:09:39 has no hits.
BS05648.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:48 Download gff for
BS05648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1065-PA | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:44 Download gff for
BS05648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1065-PA | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:55:57 Download gff for
BS05648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scsalpha-RA | 101..798 | 9..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:46 Download gff for
BS05648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scsalpha-RA | 101..798 | 9..706 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:46 Download gff for
BS05648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3817437..3817640 | 503..706 | 100 | | Plus |
3L | 3814311..3814355 | 9..53 | 91 | -> | Plus |
3L | 3816632..3817080 | 54..502 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:55:57 Download gff for
BS05648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3814311..3814355 | 9..53 | 91 | -> | Plus |
arm_3L | 3816632..3817080 | 54..502 | 100 | -> | Plus |
arm_3L | 3817437..3817640 | 503..706 | 100 | | Plus |
BS05648.3prime Sequence
755 bp (734 high quality bases) assembled on 2005-12-02
> BS05648.3prime
ATGGTCTAGAAAGCTTTTACACTAACTCCAGACGCTTCATCTCCTTGAAG
AGCTCGTGGCCCATTTTGGCAGGACTCCTGGTCACAATGACGCCGGCCTT
CTCCAGGGCGGCGATCTTGTCGTTGGCACCTCCCTTTCCTCCGGAAATGA
TGGCTCCAGCGTGACCCATGCGACGGCCGGGTGGCGCCGACACTCCGGCA
ATGAACGAGACGACAGGCTTGGCCTTGATGCCCGAATTGTACTCGGTCAG
GTAGTCGGCAGCCTTCTCCTCGGCAACGCCTCCGATCTCGCCGATCAGGA
TGATGCCCTTGGTCTCGGGATCCTTGAGGAAGACCTCCAGGCAGTCGATG
AAGTCGGTTCCGTTGAACGGATCGCCTCCAATGCCCACGCACAGGGTCTG
GCCCAGACCCACCTCCGTGGTCTGGTGCACGGCCTCGTAGGTCAAGGTTC
CCGAGCGCGAGACCACGCCGATCTTGCCGCGCTTGTGAATGTGACCCGGC
ATGATGCCGATCTTGCACTGTTCGGGGGCGATGATTCCCGGGCAGTTGGG
ACCCACCAATCGCGACTTGCTCTGGCTGATGAGGGCGTGCTTCACCTTCA
CCATGTCGTGCTGCGGCACACCCTCCGTAATGCAAACGATCAGGGGGATC
TCCGCTTCCAGAGCCTCGATGATGGCGGCCGCAGCGCCCGGTGGTGGCAC
ATAGATGACGGTGGCATGTGGATCGGTGGCCTTCTTGGCCTCCGCCACCA
AAGCG
BS05648.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1065-PA | 987 | Scsalpha-RA | 249..987 | 755..17 | 3670 | 99.8 | Minus |
CG6255-PA | 1029 | CG6255-RA | 832..908 | 175..99 | 135 | 87 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scsalpha-RB | 1250 | CG1065-RB | 357..1096 | 755..16 | 3685 | 99.9 | Minus |
Scsalpha-RA | 1479 | CG1065-RA | 357..1096 | 755..16 | 3685 | 99.9 | Minus |
CG6255-RA | 1188 | CG6255-RA | 541..1020 | 568..89 | 615 | 75.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3817434..3817722 | 520..232 | 1445 | 100 | Minus |
3L | 28110227 | 3L | 3816843..3817080 | 755..518 | 1175 | 99.6 | Minus |
3L | 28110227 | 3L | 3817783..3818000 | 233..16 | 1090 | 100 | Minus |
3R | 32079331 | 3R | 19462047..19462526 | 89..568 | 615 | 75.2 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:40:19 has no hits.
BS05648.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:47 Download gff for
BS05648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1065-PA | 249..987 | 17..755 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:42 Download gff for
BS05648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1065-PA | 249..987 | 17..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:02:39 Download gff for
BS05648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scsalpha-RA | 357..1101 | 11..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:51:23 Download gff for
BS05648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scsalpha-RA | 357..1101 | 11..755 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:51:23 Download gff for
BS05648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3816843..3817080 | 518..755 | 99 | -> | Minus |
3L | 3817437..3817721 | 233..517 | 100 | -> | Minus |
3L | 3817784..3818005 | 11..232 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:02:39 Download gff for
BS05648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3816843..3817080 | 518..755 | 99 | -> | Minus |
arm_3L | 3817437..3817721 | 233..517 | 100 | -> | Minus |
arm_3L | 3817784..3818005 | 11..232 | 98 | | Minus |
BS05648.complete Sequence
1019 bp assembled on 2007-10-17
GenBank Submission: FJ635190
> BS05648.complete
GAAGTTATCAGTCGACATGGCTGCTTCAATGAGGGCGCTGCTGAAAGTGC
GAGATGGCTTCGTGGCCGGAGTGCGCTGCAATTCGCAGTACAACAAGACG
CGCGGCAACTTGAAGCTGAACGGCGATTCGCGGGTGATCTGCCAGGGATT
CACCGGCAAACAGGGCACGTTCCACAGCCAACAGGCTCTGGAGTACGGCA
CCAAGTTGGTCGGCGGCATTTCCCCCAAGAAGGGAGGCACCCAGCATCTG
GGACTGCCCGTCTTCGCTTCGGTGGCGGAGGCCAAGAAGGCCACCGATCC
ACATGCCACCGTCATCTATGTGCCACCACCGGGCGCTGCGGCCGCCATCA
TCGAGGCTCTGGAAGCGGAGATCCCCCTGATCGTTTGCATTACGGAGGGT
GTGCCGCAGCACGACATGGTGAAGGTGAAGCACGCCCTCATCAGCCAGAG
CAAGTCGCGATTGGTGGGTCCCAACTGCCCGGGAATCATCGCCCCCGAAC
AGTGCAAGATCGGCATCATGCCGGGTCACATTCACAAGCGCGGCAAGATC
GGCGTGGTCTCGCGCTCGGGAACCTTGACCTACGAGGCCGTGCACCAGAC
CACGGAGGTGGGTCTGGGCCAGACCCTGTGCGTGGGCATTGGAGGCGATC
CGTTCAACGGAACCGACTTCATCGACTGCCTGGAGGTCTTCCTCAAGGAT
CCCGAGACCAAGGGCATCATCCTGATCGGCGAGATCGGAGGCGTTGCCGA
GGAGAAGGCTGCCGACTACCTGACCGAGTACAATTCGGGCATCAAGGCCA
AGCCTGTCGTCTCGTTCATTGCCGGAGTGTCGGCGCCACCCGGCCGTCGC
ATGGGTCACGCTGGAGCCATCATTTCCGGAGGAAAGGGAGGTGCCAACGA
CAAGATCGCCGCCCTGGAGAAGGCCGGCGTCATTGTGACCAGGAGTCCTG
CCAAAATGGGCCACGAGCTCTTCAAGGAGATGAAGCGTCTGGAGTTAGTG
TAAAAGCTTTCTAGACCAT
BS05648.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scsalpha-RB | 987 | CG1065-PB | 1..987 | 17..1003 | 4935 | 100 | Plus |
Scsalpha-RA | 987 | CG1065-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
CG6255-RA | 1029 | CG6255-PA | 439..918 | 452..931 | 615 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scsalpha-RB | 1250 | CG1065-RB | 109..1096 | 17..1004 | 4940 | 100 | Plus |
Scsalpha-RA | 1479 | CG1065-RA | 109..1096 | 17..1004 | 4940 | 100 | Plus |
CG6255-RA | 1188 | CG6255-RA | 541..1020 | 452..931 | 615 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3816630..3817080 | 52..502 | 2255 | 100 | Plus |
3L | 28110227 | 3L | 3817434..3817722 | 500..788 | 1445 | 100 | Plus |
3L | 28110227 | 3L | 3817783..3818000 | 787..1004 | 1090 | 100 | Plus |
3R | 32079331 | 3R | 19462047..19462526 | 931..452 | 615 | 75.2 | Minus |
3L | 28110227 | 3L | 3814319..3814355 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:40:46 has no hits.
BS05648.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:58 Download gff for
BS05648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scsalpha-RA | 1..987 | 17..1003 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:07 Download gff for
BS05648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scsalpha-RA | 127..1127 | 9..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:57 Download gff for
BS05648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scsalpha-RA | 109..1093 | 17..1001 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:13 Download gff for
BS05648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scsalpha-RA | 135..1119 | 17..1001 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:52 Download gff for
BS05648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scsalpha-RA | 109..1093 | 17..1001 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:52 Download gff for
BS05648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3814319..3814355 | 17..53 | 100 | -> | Plus |
3L | 3816632..3817080 | 54..502 | 100 | -> | Plus |
3L | 3817437..3817721 | 503..787 | 100 | -> | Plus |
3L | 3817784..3817997 | 788..1001 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:57 Download gff for
BS05648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3814319..3814355 | 17..53 | 100 | -> | Plus |
arm_3L | 3816632..3817080 | 54..502 | 100 | -> | Plus |
arm_3L | 3817437..3817721 | 503..787 | 100 | -> | Plus |
arm_3L | 3817784..3817997 | 788..1001 | 100 | | Plus |
BS05648.pep Sequence
Translation from 16 to 1002
> BS05648.pep
MAASMRALLKVRDGFVAGVRCNSQYNKTRGNLKLNGDSRVICQGFTGKQG
TFHSQQALEYGTKLVGGISPKKGGTQHLGLPVFASVAEAKKATDPHATVI
YVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALISQSKSRLV
GPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGL
GQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEKAAD
YLTEYNSGIKAKPVVSFIAGVSAPPGRRMGHAGAIISGGKGGANDKIAAL
EKAGVIVTRSPAKMGHELFKEMKRLELV*
BS05648.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scsalpha-PB | 328 | CG1065-PB | 1..328 | 1..328 | 1691 | 100 | Plus |
Scsalpha-PA | 328 | CG1065-PA | 1..328 | 1..328 | 1691 | 100 | Plus |
CG6255-PA | 342 | CG6255-PA | 21..329 | 20..328 | 1112 | 67.6 | Plus |
ATPCL-PF | 1095 | CG8322-PF | 539..799 | 74..322 | 211 | 27.7 | Plus |
ATPCL-PG | 1096 | CG8322-PG | 540..800 | 74..322 | 211 | 27.7 | Plus |