Clone Sequence Records
BS05649.5prime Sequence
579 bp (578 high quality bases) assembled on 2005-12-02
> BS05649.5prime
GAAGTTATCAGTCGACATGGGAAACGTATTCGCGAACTTATTCAAAGGCC
TATTCGGCAAAAAGGAAATGAGGATATTGATGGTCGGTTTGGATGCCGCT
GGTAAAACCACAATTCTGTACAAACTCAAATTAGGCGAAATTGTTACAAC
GATACCTACCATTGGTTTCAATGTGGAGACTGTAGAATACAAGAATATTA
GCTTTACAGTGTGGGATGTGGGTGGCCAAGACAAAATTCGTCCCCTGTGG
AGGCACTACTTCCAGAATACACAAGGTCTTATCTTCGTCGTGGACAGCAA
TGACCGAGAGCGTATCGGTGAGGCGAGAGAGGAGTTGATGCGCATGCTGG
CAGAGGACGAGCTGAGGGATGCAGTCTTACTAATCTTCGCAAACAAACAG
GATCTGCCAAATGCAATGAACGCGGCCGAAATCACCGACAAGCTCGGCTT
GCACTCACTCAGAAACCGCAACTGGTACATCCAGGCGACGTGTGCAACTA
GCGGTGATGGGCTGTACGAGGGACTCGACTGGCTGTCCAACCAATTGAAG
AACGCTAATCGCTAAAAGCTTTCTAGACC
BS05649.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8385-PA | 549 | Arf79F-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
CG8385-PD | 549 | Arf79F-RD | 1..549 | 17..565 | 2745 | 100 | Plus |
CG8385-PB | 549 | Arf79F-RB | 1..549 | 17..565 | 2745 | 100 | Plus |
CG8385-PE | 549 | Arf79F-RE | 1..549 | 17..565 | 2745 | 100 | Plus |
CG8385-PC | 549 | Arf79F-RC | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf79F-RJ | 1464 | CG8385-RJ | 341..890 | 16..565 | 2750 | 100 | Plus |
Arf79F-RI | 1459 | CG8385-RI | 336..885 | 16..565 | 2750 | 100 | Plus |
Arf79F-RH | 1456 | CG8385-RH | 205..754 | 16..565 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22869082..22869248 | 565..399 | 835 | 100 | Minus |
3L | 28110227 | 3L | 22869840..22869990 | 166..16 | 755 | 100 | Minus |
3L | 28110227 | 3L | 22869345..22869475 | 401..271 | 640 | 99.2 | Minus |
3L | 28110227 | 3L | 22869664..22869775 | 275..164 | 560 | 100 | Minus |
4 | 1348131 | 4 | 1124441..1124667 | 89..315 | 505 | 81.5 | Plus |
2R | 25286936 | 2R | 15323847..15324028 | 113..294 | 235 | 75.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:39:02 has no hits.
BS05649.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:50 Download gff for
BS05649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8385-PE | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:46 Download gff for
BS05649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8385-PC | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:43:56 Download gff for
BS05649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RH | 198..754 | 9..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:12 Download gff for
BS05649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RH | 198..754 | 9..565 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:12 Download gff for
BS05649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22869082..22869246 | 401..565 | 100 | <- | Minus |
3L | 22869346..22869471 | 275..400 | 100 | <- | Minus |
3L | 22869665..22869774 | 165..274 | 100 | <- | Minus |
3L | 22869842..22869994 | 9..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:43:56 Download gff for
BS05649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22862182..22862346 | 401..565 | 100 | <- | Minus |
arm_3L | 22862446..22862571 | 275..400 | 100 | <- | Minus |
arm_3L | 22862765..22862874 | 165..274 | 100 | <- | Minus |
arm_3L | 22862942..22863094 | 9..164 | 98 | | Minus |
BS05649.3prime Sequence
579 bp (578 high quality bases) assembled on 2005-12-02
> BS05649.3prime
ATGGTCTAGAAAGCTTTTAGCGATTAGCGTTCTTCAATTGGTTGGACAGC
CAGTCGAGTCCCTCGTACAGCCCATCACCGCTAGTTGCACACGTCGCCTG
GATGTACCAGTTGCGGTTTCTGAGTGAGTGCAAGCCGAGCTTGTCGGTGA
TTTCGGCCGCGTTCATTGCATTTGGCAGATCCTGTTTGTTTGCGAAGATT
AGTAAGACTGCATCCCTCAGCTCGTCCTCTGCCAGCATGCGCATCAACTC
CTCTCTCGCCTCACCGATACGCTCTCGGTCATTGCTGTCCACGACGAAGA
TAAGACCTTGTGTATTCTGGAAGTAGTGCCTCCACAGGGGACGAATTTTG
TCTTGGCCACCCACATCCCACACTGTAAAGCTAATATTCTTGTATTCTAC
AGTCTCCACATTGAAACCAATGGTAGGTATCGTTGTAACAATTTCGCCTA
ATTTGAGTTTGTACAGAATTGTGGTTTTACCAGCGGCATCCAAACCGACC
ATCAATATCCTCATTTCCTTTTTGCCGAATAGGCCTTTGAATAAGTTCGC
GAATACGTTTCCCATGTCGACTGATAACT
BS05649.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8385-PA | 549 | Arf79F-RA | 1..549 | 565..17 | 2745 | 100 | Minus |
CG8385-PD | 549 | Arf79F-RD | 1..549 | 565..17 | 2745 | 100 | Minus |
CG8385-PB | 549 | Arf79F-RB | 1..549 | 565..17 | 2745 | 100 | Minus |
CG8385-PE | 549 | Arf79F-RE | 1..549 | 565..17 | 2745 | 100 | Minus |
CG8385-PC | 549 | Arf79F-RC | 1..549 | 565..17 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf79F-RJ | 1464 | CG8385-RJ | 341..890 | 566..17 | 2750 | 100 | Minus |
Arf79F-RI | 1459 | CG8385-RI | 336..885 | 566..17 | 2750 | 100 | Minus |
Arf79F-RH | 1456 | CG8385-RH | 205..754 | 566..17 | 2750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22869082..22869248 | 17..183 | 835 | 100 | Plus |
3L | 28110227 | 3L | 22869840..22869990 | 416..566 | 755 | 100 | Plus |
3L | 28110227 | 3L | 22869345..22869475 | 181..311 | 640 | 99.2 | Plus |
3L | 28110227 | 3L | 22869664..22869775 | 307..418 | 560 | 100 | Plus |
4 | 1348131 | 4 | 1124441..1124667 | 493..267 | 505 | 81.5 | Minus |
2R | 25286936 | 2R | 15323847..15324028 | 469..288 | 235 | 75.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:48:22 has no hits.
BS05649.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:49 Download gff for
BS05649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8385-PE | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:45 Download gff for
BS05649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8385-PC | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:37:01 Download gff for
BS05649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RH | 198..754 | 17..573 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:11:02 Download gff for
BS05649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RH | 198..754 | 17..573 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:11:02 Download gff for
BS05649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22869082..22869246 | 17..181 | 100 | <- | Plus |
3L | 22869346..22869471 | 182..307 | 100 | <- | Plus |
3L | 22869665..22869774 | 308..417 | 100 | <- | Plus |
3L | 22869842..22869994 | 418..573 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:37:01 Download gff for
BS05649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22862182..22862346 | 17..181 | 100 | <- | Plus |
arm_3L | 22862446..22862571 | 182..307 | 100 | <- | Plus |
arm_3L | 22862765..22862874 | 308..417 | 100 | <- | Plus |
arm_3L | 22862942..22863094 | 418..573 | 98 | | Plus |
BS05649.complete Sequence
581 bp (581 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635191
> BS05649.complete
GAAGTTATCAGTCGACATGGGAAACGTATTCGCGAACTTATTCAAAGGCC
TATTCGGCAAAAAGGAAATGAGGATATTGATGGTCGGTTTGGATGCCGCT
GGTAAAACCACAATTCTGTACAAACTCAAATTAGGCGAAATTGTTACAAC
GATACCTACCATTGGTTTCAATGTGGAGACTGTAGAATACAAGAATATTA
GCTTTACAGTGTGGGATGTGGGTGGCCAAGACAAAATTCGTCCCCTGTGG
AGGCACTACTTCCAGAATACACAAGGTCTTATCTTCGTCGTGGACAGCAA
TGACCGAGAGCGTATCGGTGAGGCGAGAGAGGAGTTGATGCGCATGCTGG
CAGAGGACGAGCTGAGGGATGCAGTCTTACTAATCTTCGCAAACAAACAG
GATCTGCCAAATGCAATGAACGCGGCCGAAATCACCGACAAGCTCGGCTT
GCACTCACTCAGAAACCGCAACTGGTACATCCAGGCGACGTGTGCAACTA
GCGGTGATGGGCTGTACGAGGGACTCGACTGGCTGTCCAACCAATTGAAG
AACGCTAATCGCTAAAAGCTTTCTAGACCAT
BS05649.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf79F-RJ | 549 | CG8385-PJ | 1..549 | 17..565 | 2745 | 100 | Plus |
Arf79F-RI | 549 | CG8385-PI | 1..549 | 17..565 | 2745 | 100 | Plus |
Arf79F-RH | 549 | CG8385-PH | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf79F-RJ | 1464 | CG8385-RJ | 341..890 | 16..565 | 2750 | 100 | Plus |
Arf79F-RI | 1459 | CG8385-RI | 336..885 | 16..565 | 2750 | 100 | Plus |
Arf79F-RH | 1456 | CG8385-RH | 205..754 | 16..565 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22869082..22869248 | 565..399 | 835 | 100 | Minus |
3L | 28110227 | 3L | 22869840..22869990 | 166..16 | 755 | 100 | Minus |
3L | 28110227 | 3L | 22869345..22869475 | 401..271 | 640 | 99.2 | Minus |
3L | 28110227 | 3L | 22869664..22869775 | 275..164 | 560 | 100 | Minus |
4 | 1348131 | 4 | 1124441..1124667 | 89..315 | 505 | 81.5 | Plus |
2R | 25286936 | 2R | 15323847..15324028 | 113..294 | 235 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:18:13 has no hits.
BS05649.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:42 Download gff for
BS05649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RE | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:27 Download gff for
BS05649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RH | 203..759 | 9..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:35 Download gff for
BS05649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RH | 206..752 | 17..563 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:42 Download gff for
BS05649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RE | 394..950 | 9..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:04 Download gff for
BS05649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RH | 206..752 | 17..563 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:04 Download gff for
BS05649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22869665..22869774 | 165..274 | 100 | <- | Minus |
3L | 22869842..22869989 | 17..164 | 100 | | Minus |
3L | 22869084..22869246 | 401..563 | 100 | <- | Minus |
3L | 22869346..22869471 | 275..400 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:35 Download gff for
BS05649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22862765..22862874 | 165..274 | 100 | <- | Minus |
arm_3L | 22862942..22863089 | 17..164 | 100 | | Minus |
arm_3L | 22862184..22862346 | 401..563 | 100 | <- | Minus |
arm_3L | 22862446..22862571 | 275..400 | 100 | <- | Minus |
BS05649.pep Sequence
Translation from 16 to 564
> BS05649.pep
MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERI
GEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRN
RNWYIQATCATSGDGLYEGLDWLSNQLKNANR*
BS05649.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf79F-PJ | 182 | CG8385-PJ | 1..182 | 1..182 | 946 | 100 | Plus |
Arf79F-PI | 182 | CG8385-PI | 1..182 | 1..182 | 946 | 100 | Plus |
Arf79F-PH | 182 | CG8385-PH | 1..182 | 1..182 | 946 | 100 | Plus |
Arf79F-PF | 182 | CG8385-PF | 1..182 | 1..182 | 946 | 100 | Plus |
Arf79F-PC | 182 | CG8385-PC | 1..182 | 1..182 | 946 | 100 | Plus |