Clone BS05649 Report

Search the DGRC for BS05649

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptArf79F-RC
Protein status:BS05649.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05649.5prime Sequence

579 bp (578 high quality bases) assembled on 2005-12-02

> BS05649.5prime
GAAGTTATCAGTCGACATGGGAAACGTATTCGCGAACTTATTCAAAGGCC
TATTCGGCAAAAAGGAAATGAGGATATTGATGGTCGGTTTGGATGCCGCT
GGTAAAACCACAATTCTGTACAAACTCAAATTAGGCGAAATTGTTACAAC
GATACCTACCATTGGTTTCAATGTGGAGACTGTAGAATACAAGAATATTA
GCTTTACAGTGTGGGATGTGGGTGGCCAAGACAAAATTCGTCCCCTGTGG
AGGCACTACTTCCAGAATACACAAGGTCTTATCTTCGTCGTGGACAGCAA
TGACCGAGAGCGTATCGGTGAGGCGAGAGAGGAGTTGATGCGCATGCTGG
CAGAGGACGAGCTGAGGGATGCAGTCTTACTAATCTTCGCAAACAAACAG
GATCTGCCAAATGCAATGAACGCGGCCGAAATCACCGACAAGCTCGGCTT
GCACTCACTCAGAAACCGCAACTGGTACATCCAGGCGACGTGTGCAACTA
GCGGTGATGGGCTGTACGAGGGACTCGACTGGCTGTCCAACCAATTGAAG
AACGCTAATCGCTAAAAGCTTTCTAGACC

BS05649.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8385-PA 549 Arf79F-RA 1..549 17..565 2745 100 Plus
CG8385-PD 549 Arf79F-RD 1..549 17..565 2745 100 Plus
CG8385-PB 549 Arf79F-RB 1..549 17..565 2745 100 Plus
CG8385-PE 549 Arf79F-RE 1..549 17..565 2745 100 Plus
CG8385-PC 549 Arf79F-RC 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Arf79F-RJ 1464 CG8385-RJ 341..890 16..565 2750 100 Plus
Arf79F-RI 1459 CG8385-RI 336..885 16..565 2750 100 Plus
Arf79F-RH 1456 CG8385-RH 205..754 16..565 2750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22869082..22869248 565..399 835 100 Minus
3L 28110227 3L 22869840..22869990 166..16 755 100 Minus
3L 28110227 3L 22869345..22869475 401..271 640 99.2 Minus
3L 28110227 3L 22869664..22869775 275..164 560 100 Minus
4 1348131 4 1124441..1124667 89..315 505 81.5 Plus
2R 25286936 2R 15323847..15324028 113..294 235 75.3 Plus
Blast to na_te.dros performed on 2015-02-13 15:39:02 has no hits.

BS05649.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:50 Download gff for BS05649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8385-PE 1..549 17..565 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:46 Download gff for BS05649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8385-PC 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:43:56 Download gff for BS05649.5prime
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RH 198..754 9..565 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:12 Download gff for BS05649.5prime
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RH 198..754 9..565 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:12 Download gff for BS05649.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22869082..22869246 401..565 100 <- Minus
3L 22869346..22869471 275..400 100 <- Minus
3L 22869665..22869774 165..274 100 <- Minus
3L 22869842..22869994 9..164 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:43:56 Download gff for BS05649.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22862182..22862346 401..565 100 <- Minus
arm_3L 22862446..22862571 275..400 100 <- Minus
arm_3L 22862765..22862874 165..274 100 <- Minus
arm_3L 22862942..22863094 9..164 98   Minus

BS05649.3prime Sequence

579 bp (578 high quality bases) assembled on 2005-12-02

> BS05649.3prime
ATGGTCTAGAAAGCTTTTAGCGATTAGCGTTCTTCAATTGGTTGGACAGC
CAGTCGAGTCCCTCGTACAGCCCATCACCGCTAGTTGCACACGTCGCCTG
GATGTACCAGTTGCGGTTTCTGAGTGAGTGCAAGCCGAGCTTGTCGGTGA
TTTCGGCCGCGTTCATTGCATTTGGCAGATCCTGTTTGTTTGCGAAGATT
AGTAAGACTGCATCCCTCAGCTCGTCCTCTGCCAGCATGCGCATCAACTC
CTCTCTCGCCTCACCGATACGCTCTCGGTCATTGCTGTCCACGACGAAGA
TAAGACCTTGTGTATTCTGGAAGTAGTGCCTCCACAGGGGACGAATTTTG
TCTTGGCCACCCACATCCCACACTGTAAAGCTAATATTCTTGTATTCTAC
AGTCTCCACATTGAAACCAATGGTAGGTATCGTTGTAACAATTTCGCCTA
ATTTGAGTTTGTACAGAATTGTGGTTTTACCAGCGGCATCCAAACCGACC
ATCAATATCCTCATTTCCTTTTTGCCGAATAGGCCTTTGAATAAGTTCGC
GAATACGTTTCCCATGTCGACTGATAACT

BS05649.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8385-PA 549 Arf79F-RA 1..549 565..17 2745 100 Minus
CG8385-PD 549 Arf79F-RD 1..549 565..17 2745 100 Minus
CG8385-PB 549 Arf79F-RB 1..549 565..17 2745 100 Minus
CG8385-PE 549 Arf79F-RE 1..549 565..17 2745 100 Minus
CG8385-PC 549 Arf79F-RC 1..549 565..17 2745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
Arf79F-RJ 1464 CG8385-RJ 341..890 566..17 2750 100 Minus
Arf79F-RI 1459 CG8385-RI 336..885 566..17 2750 100 Minus
Arf79F-RH 1456 CG8385-RH 205..754 566..17 2750 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22869082..22869248 17..183 835 100 Plus
3L 28110227 3L 22869840..22869990 416..566 755 100 Plus
3L 28110227 3L 22869345..22869475 181..311 640 99.2 Plus
3L 28110227 3L 22869664..22869775 307..418 560 100 Plus
4 1348131 4 1124441..1124667 493..267 505 81.5 Minus
2R 25286936 2R 15323847..15324028 469..288 235 75.3 Minus
Blast to na_te.dros performed on 2015-02-12 13:48:22 has no hits.

BS05649.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:49 Download gff for BS05649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8385-PE 1..549 17..565 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:45 Download gff for BS05649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8385-PC 1..549 17..565 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:37:01 Download gff for BS05649.3prime
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RH 198..754 17..573 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:11:02 Download gff for BS05649.3prime
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RH 198..754 17..573 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:11:02 Download gff for BS05649.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22869082..22869246 17..181 100 <- Plus
3L 22869346..22869471 182..307 100 <- Plus
3L 22869665..22869774 308..417 100 <- Plus
3L 22869842..22869994 418..573 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:37:01 Download gff for BS05649.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22862182..22862346 17..181 100 <- Plus
arm_3L 22862446..22862571 182..307 100 <- Plus
arm_3L 22862765..22862874 308..417 100 <- Plus
arm_3L 22862942..22863094 418..573 98   Plus

BS05649.complete Sequence

581 bp (581 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635191

> BS05649.complete
GAAGTTATCAGTCGACATGGGAAACGTATTCGCGAACTTATTCAAAGGCC
TATTCGGCAAAAAGGAAATGAGGATATTGATGGTCGGTTTGGATGCCGCT
GGTAAAACCACAATTCTGTACAAACTCAAATTAGGCGAAATTGTTACAAC
GATACCTACCATTGGTTTCAATGTGGAGACTGTAGAATACAAGAATATTA
GCTTTACAGTGTGGGATGTGGGTGGCCAAGACAAAATTCGTCCCCTGTGG
AGGCACTACTTCCAGAATACACAAGGTCTTATCTTCGTCGTGGACAGCAA
TGACCGAGAGCGTATCGGTGAGGCGAGAGAGGAGTTGATGCGCATGCTGG
CAGAGGACGAGCTGAGGGATGCAGTCTTACTAATCTTCGCAAACAAACAG
GATCTGCCAAATGCAATGAACGCGGCCGAAATCACCGACAAGCTCGGCTT
GCACTCACTCAGAAACCGCAACTGGTACATCCAGGCGACGTGTGCAACTA
GCGGTGATGGGCTGTACGAGGGACTCGACTGGCTGTCCAACCAATTGAAG
AACGCTAATCGCTAAAAGCTTTCTAGACCAT

BS05649.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
Arf79F-RJ 549 CG8385-PJ 1..549 17..565 2745 100 Plus
Arf79F-RI 549 CG8385-PI 1..549 17..565 2745 100 Plus
Arf79F-RH 549 CG8385-PH 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
Arf79F-RJ 1464 CG8385-RJ 341..890 16..565 2750 100 Plus
Arf79F-RI 1459 CG8385-RI 336..885 16..565 2750 100 Plus
Arf79F-RH 1456 CG8385-RH 205..754 16..565 2750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22869082..22869248 565..399 835 100 Minus
3L 28110227 3L 22869840..22869990 166..16 755 100 Minus
3L 28110227 3L 22869345..22869475 401..271 640 99.2 Minus
3L 28110227 3L 22869664..22869775 275..164 560 100 Minus
4 1348131 4 1124441..1124667 89..315 505 81.5 Plus
2R 25286936 2R 15323847..15324028 113..294 235 75.3 Plus
Blast to na_te.dros performed on 2014-11-26 22:18:13 has no hits.

BS05649.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:42 Download gff for BS05649.complete
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RE 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:27 Download gff for BS05649.complete
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RH 203..759 9..565 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:35 Download gff for BS05649.complete
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RH 206..752 17..563 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:42 Download gff for BS05649.complete
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RE 394..950 9..565 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:04 Download gff for BS05649.complete
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RH 206..752 17..563 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:04 Download gff for BS05649.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22869665..22869774 165..274 100 <- Minus
3L 22869842..22869989 17..164 100   Minus
3L 22869084..22869246 401..563 100 <- Minus
3L 22869346..22869471 275..400 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:35 Download gff for BS05649.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22862765..22862874 165..274 100 <- Minus
arm_3L 22862942..22863089 17..164 100   Minus
arm_3L 22862184..22862346 401..563 100 <- Minus
arm_3L 22862446..22862571 275..400 100 <- Minus

BS05649.pep Sequence

Translation from 16 to 564

> BS05649.pep
MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERI
GEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRN
RNWYIQATCATSGDGLYEGLDWLSNQLKNANR*

BS05649.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
Arf79F-PJ 182 CG8385-PJ 1..182 1..182 946 100 Plus
Arf79F-PI 182 CG8385-PI 1..182 1..182 946 100 Plus
Arf79F-PH 182 CG8385-PH 1..182 1..182 946 100 Plus
Arf79F-PF 182 CG8385-PF 1..182 1..182 946 100 Plus
Arf79F-PC 182 CG8385-PC 1..182 1..182 946 100 Plus