Clone Sequence Records
BS05650.3prime Sequence
907 bp (808 high quality bases) assembled on 2005-12-02
> BS05650.3prime
ATGGTCTAGAAAGCTTTTAATCGCTACCAAGGATTCCGGTATCGATGTTG
CTCCAGCGCCCCGAACGCCGGTAACCGAACATGCTCTTCAGTATCTCCAG
GCCGGACTCCACAGTGGTGCGCACGTCGCGCTCGCTGCCTAGCTTTGGGT
TGATCTCCACCAGATCGACGCCCTGCACCCGCTTGGTGTCCCGGAGTGCC
TCCACGATGCTGATTCCCTCGCGGAGCGTGAGGCCACCGCGCACCGCGGT
GCCAGTGCTAGGCGCCACATTGCTGTCCAAGGCGTCGATGTCAAAGCTGA
CGTGGATCTTGTTCTGCGGATTAAGGGCGTCCAGCGTCATCTCGATAATC
TTGGGCACGCCCACCCGGTCGATAGTATCCATTGCATAGTAGCGTATTCC
GACTTTGTTTAGGATGAACGCCTCGTAGGGGTCAATGTCCCGGAGTCCGA
TGTAAACCAGCTGATCCTTGGGCAAGCAGTTGGGCGCGATTTCCTGGAGG
CCAGCGTGCTGCCAGGTGTTACGGAGCTGTTCCAACAGAAAGGATACAGG
CATCCCATGGATGTTGCCCGACTGCGAGGTGCTATGCAGATTGATGTCCG
CATGTGCGTCGATCCACACCAGGGACAAATTCGGCGTGTGTTGCAGGTGC
CCGGCCACGGATCCGAAGCCGATCGCATGATCACCACCAATGGCTAAAAA
CTGCGTGTTCTCCACGAGCATGAGTTTCACCTGTTCAATCAGTGCCCGAT
TGCAGGCCATGAAGTCCGCGTAGTTTCGGATGTGGTGATAGTGCACACGC
TGCTGCTGGAGAAGGGGCTCGTCTACGGCGTACTGCAGATTTCCGTAGTC
CCGTATCACCAGGCCATCATGACTGCTCTGAAACACCTGACGCAGACTGC
TCTGCCG
BS05650.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18104-PA | 1056 | arg-RA | 166..1056 | 907..17 | 4405 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
arg-RA | 1243 | CG18104-RA | 243..1134 | 907..16 | 4430 | 99.8 | Minus |
elav-RD | 10506 | CG4262-RD | 9627..9832 | 663..868 | 1030 | 100 | Plus |
elav-RD | 10506 | CG4262-RD | 9380..9567 | 477..664 | 940 | 100 | Plus |
elav-RD | 10506 | CG4262-RD | 10025..10064 | 868..907 | 185 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 527562..527919 | 373..16 | 1790 | 100 | Minus |
X | 23542271 | X | 509909..510114 | 868..663 | 1030 | 100 | Minus |
X | 23542271 | X | 510174..510361 | 664..477 | 940 | 100 | Minus |
X | 23542271 | X | 526501..526601 | 477..377 | 505 | 100 | Minus |
X | 23542271 | X | 509677..509716 | 907..868 | 185 | 97.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:14:02 has no hits.
BS05650.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:17:51 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:48 Download gff for
BS05650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18104-PA | 166..1056 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:39:36 Download gff for
BS05650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 260..1151 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:20 Download gff for
BS05650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 243..1134 | 16..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:20 Download gff for
BS05650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 509910..510113 | 664..867 | 100 | -> | Minus |
X | 510175..510361 | 477..663 | 100 | -> | Minus |
X | 526502..526601 | 377..476 | 100 | -> | Minus |
X | 527559..527919 | 16..376 | 99 | | Minus |
X | 509677..509716 | 868..907 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:39:36 Download gff for
BS05650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 403710..403749 | 868..907 | 97 | -> | Minus |
arm_X | 403943..404146 | 664..867 | 100 | -> | Minus |
arm_X | 404208..404394 | 477..663 | 100 | -> | Minus |
arm_X | 420535..420634 | 377..476 | 100 | -> | Minus |
arm_X | 421592..421952 | 16..376 | 99 | | Minus |
BS05650.5prime Sequence
980 bp (833 high quality bases) assembled on 2005-12-02
> BS05650.5prime
GAAGTTATCAGTCGACATGTGGTGGAGCCGTAAATTTGCCTCAAGGTCTC
TCCGCCTCCACCGGCTCAAGAGCACCGGAAGCACTGCGCCCAGGGAACCT
GAGCAATCTCTAGGCATCATTGGAGTGCCCTTCGCAAAGGGGCAGGCCAA
GCAGGGCGTGGAACTGGCGCCAGATCTTCTCCGGCAGAGCAGTCTGCGTC
AGGTGCTTCAGAGCAGTCATGATGGCCTGGTGATACGGGACTACGGAAAT
CTGCAGTACGCCGTAGACGAGCCCCTTCTCCAGCAGCAGCGTGTGCACTA
TCACCACATCCGAAACTACGCGGACTTCATGGCCTGCAATCGGGCACTGA
TTGAACAGGTGAAACTCATGCTCGTGGAGAACACGCAGTTTTTAGCCATT
GGTGGTGATCATGCGATCGGCTTCGGATCCGTGGCCGGGCACCTGCAACA
CACGCCGAATTTGTCCCTGGTGTGGATCGACGCACATGCGGACATCAATC
TGCATAGCACCTCGCAGTCGGGCAACATCCATGGGATGCCTGTATCCTTT
CTGTTGGAACAGCTCCGTAACACCTGGCAGCACGCTGGCCTCCAGGAAAT
CGCGCCCAACTGCTTGCCCAAGGATCAGCTGGTTTACATCGGACTCCGGG
ACATTGACCCCTACGAGGCGTTCATCCTAAACAAAGTCGGAATACGCTAC
TATGCAATGGATACTATCGACCGGGTGGGCGTGCCCAAGATTATCGAGAT
GACGCTGGACGCCCTTAATCCGCAGAACAAGATCCACGTCAGCTTTGACA
TCGACGCCTTGGACAGCAATGTGGCGCCTAGCACTGGCACCGCGGTGCGC
GGTGGCCTCACGCTCCGCGAGGGAATCAGCATCGTGGAGGCACTCCGGGA
CACCAAGCGGGTGCAGGGCGTCGATCTGGTGGAAGATCACCCAAAGCTAG
GCAGCGAGCGCGACGTGCGCACCACTGTGG
BS05650.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18104-PA | 1056 | arg-RA | 1..917 | 17..933 | 4560 | 99.8 | Plus |
CG18104-PA | 1056 | arg-RA | 923..964 | 939..980 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
arg-RA | 1243 | CG18104-RA | 78..1041 | 17..980 | 4760 | 99.7 | Plus |
elav-RD | 10506 | CG4262-RD | 9627..9832 | 426..221 | 1030 | 100 | Minus |
elav-RD | 10506 | CG4262-RD | 10025..10229 | 221..17 | 1025 | 100 | Minus |
elav-RD | 10506 | CG4262-RD | 9380..9567 | 612..425 | 940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 527562..527826 | 716..980 | 1250 | 98.1 | Plus |
X | 23542271 | X | 509909..510114 | 221..426 | 1030 | 100 | Plus |
X | 23542271 | X | 509512..509716 | 17..221 | 1025 | 100 | Plus |
X | 23542271 | X | 510174..510361 | 425..612 | 940 | 100 | Plus |
X | 23542271 | X | 526501..526601 | 612..712 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:01:11 has no hits.
BS05650.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:17:52 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:49 Download gff for
BS05650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18104-PA | 1..964 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:56:19 Download gff for
BS05650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 95..1058 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:40:59 Download gff for
BS05650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 78..1041 | 17..980 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:40:59 Download gff for
BS05650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 509512..509716 | 17..221 | 100 | -> | Plus |
X | 509910..510113 | 222..425 | 100 | -> | Plus |
X | 510175..510361 | 426..612 | 100 | -> | Plus |
X | 526502..526601 | 613..712 | 100 | -> | Plus |
X | 527559..527826 | 713..980 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:56:19 Download gff for
BS05650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 403545..403749 | 17..221 | 100 | -> | Plus |
arm_X | 403943..404146 | 222..425 | 100 | -> | Plus |
arm_X | 404208..404394 | 426..612 | 100 | -> | Plus |
arm_X | 420535..420634 | 613..712 | 100 | -> | Plus |
arm_X | 421592..421859 | 713..980 | 98 | | Plus |
BS05650.complete Sequence
1088 bp (1088 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635192
> BS05650.complete
GAAGTTATCAGTCGACATGTGGTGGAGCCGTAAATTTGCCTCAAGGTCTC
TCCGCCTCCACCGGCTCAAGAGCACCGGAAGCACTGCGCCCAGGGAACCT
GAGCAATCTCTAGGCATCATTGGAGTGCCCTTCGCAAAGGGGCAGGCCAA
GCAGGGCGTGGAACTGGCGCCAGATCTTCTCCGGCAGAGCAGTCTGCGTC
AGGTGCTTCAGAGCAGTCATGATGGCCTGGTGATACGGGACTACGGAAAT
CTGCAGTACGCCGTAGACGAGCCCCTTCTCCAGCAGCAGCGTGTGCACTA
TCACCACATCCGAAACTACGCGGACTTCATGGCCTGCAATCGGGCACTGA
TTGAACAGGTGAAACTCATGCTCGTGGAGAACACGCAGTTTTTAGCCATT
GGTGGTGATCATGCGATCGGCTTCGGATCCGTGGCCGGGCACCTGCAACA
CACGCCGAATTTGTCCCTGGTGTGGATCGACGCACATGCGGACATCAATC
TGCATAGCACCTCGCAGTCGGGCAACATCCATGGGATGCCTGTATCCTTT
CTGTTGGAACAGCTCCGTAACACCTGGCAGCACGCTGGCCTCCAGGAAAT
CGCGCCCAACTGCTTGCCCAAGGATCAGCTGGTTTACATCGGACTCCGGG
ACATTGACCCCTACGAGGCGTTCATCCTAAACAAAGTCGGAATACGCTAC
TATGCAATGGATACTATCGACCGGGTGGGCGTGCCCAAGATTATCGAGAT
GACGCTGGACGCCCTTAATCCGCAGAACAAGATCCACGTCAGCTTTGACA
TCGACGCCTTGGACAGCAATGTGGCGCCTAGCACTGGCACCGCGGTGCGC
GGTGGCCTCACGCTCCGCGAGGGAATCAGCATCGTGGAGGCACTCCGGGA
CACCAAGCGGGTGCAGGGCGTCGATCTGGTGGAGATCAACCCAAAGCTAG
GCAGCGAGCGCGACGTGCGCACCACTGTGGAGTCCGGCCTGGAGATACTG
AAGAGCATGTTCGGTTACCGGCGTTCGGGGCGCTGGAGCAACATCGATAC
CGGAATCCTTGGTAGCGATTAAAAGCTTTCTAGACCAT
BS05650.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
arg-RA | 1056 | CG18104-PA | 1..1056 | 17..1072 | 5265 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
arg-RA | 1243 | CG18104-RA | 78..1134 | 17..1073 | 5270 | 99.9 | Plus |
elav-RD | 10506 | CG4262-RD | 9627..9832 | 426..221 | 1030 | 100 | Minus |
elav-RD | 10506 | CG4262-RD | 10025..10229 | 221..17 | 1025 | 100 | Minus |
elav-RD | 10506 | CG4262-RD | 9380..9567 | 612..425 | 940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 527562..527919 | 716..1073 | 1790 | 100 | Plus |
X | 23542271 | X | 509909..510114 | 221..426 | 1030 | 100 | Plus |
X | 23542271 | X | 509512..509716 | 17..221 | 1025 | 100 | Plus |
X | 23542271 | X | 510174..510361 | 425..612 | 940 | 100 | Plus |
X | 23542271 | X | 526501..526601 | 612..712 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:44:27 has no hits.
BS05650.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:43 Download gff for
BS05650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 1..1056 | 17..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:10 Download gff for
BS05650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 95..1148 | 17..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:56 Download gff for
BS05650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 95..1148 | 17..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:43 Download gff for
BS05650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 95..1151 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:17:19 Download gff for
BS05650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 78..1131 | 17..1070 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:17:19 Download gff for
BS05650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 510175..510361 | 426..612 | 100 | -> | Plus |
X | 526502..526601 | 613..712 | 100 | -> | Plus |
X | 509512..509716 | 17..221 | 100 | -> | Plus |
X | 509910..510113 | 222..425 | 100 | -> | Plus |
X | 527559..527916 | 713..1070 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:56 Download gff for
BS05650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 403545..403749 | 17..221 | 100 | -> | Plus |
arm_X | 403943..404146 | 222..425 | 100 | -> | Plus |
arm_X | 404208..404394 | 426..612 | 100 | -> | Plus |
arm_X | 420535..420634 | 613..712 | 100 | -> | Plus |
arm_X | 421592..421949 | 713..1070 | 99 | | Plus |
BS05650.pep Sequence
Translation from 16 to 1071
> BS05650.pep
MWWSRKFASRSLRLHRLKSTGSTAPREPEQSLGIIGVPFAKGQAKQGVEL
APDLLRQSSLRQVLQSSHDGLVIRDYGNLQYAVDEPLLQQQRVHYHHIRN
YADFMACNRALIEQVKLMLVENTQFLAIGGDHAIGFGSVAGHLQHTPNLS
LVWIDAHADINLHSTSQSGNIHGMPVSFLLEQLRNTWQHAGLQEIAPNCL
PKDQLVYIGLRDIDPYEAFILNKVGIRYYAMDTIDRVGVPKIIEMTLDAL
NPQNKIHVSFDIDALDSNVAPSTGTAVRGGLTLREGISIVEALRDTKRVQ
GVDLVEINPKLGSERDVRTTVESGLEILKSMFGYRRSGRWSNIDTGILGS
D*
BS05650.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
arg-PA | 351 | CG18104-PA | 1..351 | 1..351 | 1814 | 100 | Plus |