Clone BS05650 Report

Search the DGRC for BS05650

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptarg-RA
Protein status:BS05650.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05650.3prime Sequence

907 bp (808 high quality bases) assembled on 2005-12-02

> BS05650.3prime
ATGGTCTAGAAAGCTTTTAATCGCTACCAAGGATTCCGGTATCGATGTTG
CTCCAGCGCCCCGAACGCCGGTAACCGAACATGCTCTTCAGTATCTCCAG
GCCGGACTCCACAGTGGTGCGCACGTCGCGCTCGCTGCCTAGCTTTGGGT
TGATCTCCACCAGATCGACGCCCTGCACCCGCTTGGTGTCCCGGAGTGCC
TCCACGATGCTGATTCCCTCGCGGAGCGTGAGGCCACCGCGCACCGCGGT
GCCAGTGCTAGGCGCCACATTGCTGTCCAAGGCGTCGATGTCAAAGCTGA
CGTGGATCTTGTTCTGCGGATTAAGGGCGTCCAGCGTCATCTCGATAATC
TTGGGCACGCCCACCCGGTCGATAGTATCCATTGCATAGTAGCGTATTCC
GACTTTGTTTAGGATGAACGCCTCGTAGGGGTCAATGTCCCGGAGTCCGA
TGTAAACCAGCTGATCCTTGGGCAAGCAGTTGGGCGCGATTTCCTGGAGG
CCAGCGTGCTGCCAGGTGTTACGGAGCTGTTCCAACAGAAAGGATACAGG
CATCCCATGGATGTTGCCCGACTGCGAGGTGCTATGCAGATTGATGTCCG
CATGTGCGTCGATCCACACCAGGGACAAATTCGGCGTGTGTTGCAGGTGC
CCGGCCACGGATCCGAAGCCGATCGCATGATCACCACCAATGGCTAAAAA
CTGCGTGTTCTCCACGAGCATGAGTTTCACCTGTTCAATCAGTGCCCGAT
TGCAGGCCATGAAGTCCGCGTAGTTTCGGATGTGGTGATAGTGCACACGC
TGCTGCTGGAGAAGGGGCTCGTCTACGGCGTACTGCAGATTTCCGTAGTC
CCGTATCACCAGGCCATCATGACTGCTCTGAAACACCTGACGCAGACTGC
TCTGCCG

BS05650.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG18104-PA 1056 arg-RA 166..1056 907..17 4405 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
arg-RA 1243 CG18104-RA 243..1134 907..16 4430 99.8 Minus
elav-RD 10506 CG4262-RD 9627..9832 663..868 1030 100 Plus
elav-RD 10506 CG4262-RD 9380..9567 477..664 940 100 Plus
elav-RD 10506 CG4262-RD 10025..10064 868..907 185 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 527562..527919 373..16 1790 100 Minus
X 23542271 X 509909..510114 868..663 1030 100 Minus
X 23542271 X 510174..510361 664..477 940 100 Minus
X 23542271 X 526501..526601 477..377 505 100 Minus
X 23542271 X 509677..509716 907..868 185 97.5 Minus
Blast to na_te.dros performed on 2015-02-10 17:14:02 has no hits.

BS05650.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:17:51 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:48 Download gff for BS05650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18104-PA 166..1056 17..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:39:36 Download gff for BS05650.3prime
Subject Subject Range Query Range Percent Splice Strand
arg-RA 260..1151 16..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:20 Download gff for BS05650.3prime
Subject Subject Range Query Range Percent Splice Strand
arg-RA 243..1134 16..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:20 Download gff for BS05650.3prime
Subject Subject Range Query Range Percent Splice Strand
X 509910..510113 664..867 100 -> Minus
X 510175..510361 477..663 100 -> Minus
X 526502..526601 377..476 100 -> Minus
X 527559..527919 16..376 99   Minus
X 509677..509716 868..907 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:39:36 Download gff for BS05650.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 403710..403749 868..907 97 -> Minus
arm_X 403943..404146 664..867 100 -> Minus
arm_X 404208..404394 477..663 100 -> Minus
arm_X 420535..420634 377..476 100 -> Minus
arm_X 421592..421952 16..376 99   Minus

BS05650.5prime Sequence

980 bp (833 high quality bases) assembled on 2005-12-02

> BS05650.5prime
GAAGTTATCAGTCGACATGTGGTGGAGCCGTAAATTTGCCTCAAGGTCTC
TCCGCCTCCACCGGCTCAAGAGCACCGGAAGCACTGCGCCCAGGGAACCT
GAGCAATCTCTAGGCATCATTGGAGTGCCCTTCGCAAAGGGGCAGGCCAA
GCAGGGCGTGGAACTGGCGCCAGATCTTCTCCGGCAGAGCAGTCTGCGTC
AGGTGCTTCAGAGCAGTCATGATGGCCTGGTGATACGGGACTACGGAAAT
CTGCAGTACGCCGTAGACGAGCCCCTTCTCCAGCAGCAGCGTGTGCACTA
TCACCACATCCGAAACTACGCGGACTTCATGGCCTGCAATCGGGCACTGA
TTGAACAGGTGAAACTCATGCTCGTGGAGAACACGCAGTTTTTAGCCATT
GGTGGTGATCATGCGATCGGCTTCGGATCCGTGGCCGGGCACCTGCAACA
CACGCCGAATTTGTCCCTGGTGTGGATCGACGCACATGCGGACATCAATC
TGCATAGCACCTCGCAGTCGGGCAACATCCATGGGATGCCTGTATCCTTT
CTGTTGGAACAGCTCCGTAACACCTGGCAGCACGCTGGCCTCCAGGAAAT
CGCGCCCAACTGCTTGCCCAAGGATCAGCTGGTTTACATCGGACTCCGGG
ACATTGACCCCTACGAGGCGTTCATCCTAAACAAAGTCGGAATACGCTAC
TATGCAATGGATACTATCGACCGGGTGGGCGTGCCCAAGATTATCGAGAT
GACGCTGGACGCCCTTAATCCGCAGAACAAGATCCACGTCAGCTTTGACA
TCGACGCCTTGGACAGCAATGTGGCGCCTAGCACTGGCACCGCGGTGCGC
GGTGGCCTCACGCTCCGCGAGGGAATCAGCATCGTGGAGGCACTCCGGGA
CACCAAGCGGGTGCAGGGCGTCGATCTGGTGGAAGATCACCCAAAGCTAG
GCAGCGAGCGCGACGTGCGCACCACTGTGG

BS05650.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG18104-PA 1056 arg-RA 1..917 17..933 4560 99.8 Plus
CG18104-PA 1056 arg-RA 923..964 939..980 210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
arg-RA 1243 CG18104-RA 78..1041 17..980 4760 99.7 Plus
elav-RD 10506 CG4262-RD 9627..9832 426..221 1030 100 Minus
elav-RD 10506 CG4262-RD 10025..10229 221..17 1025 100 Minus
elav-RD 10506 CG4262-RD 9380..9567 612..425 940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 527562..527826 716..980 1250 98.1 Plus
X 23542271 X 509909..510114 221..426 1030 100 Plus
X 23542271 X 509512..509716 17..221 1025 100 Plus
X 23542271 X 510174..510361 425..612 940 100 Plus
X 23542271 X 526501..526601 612..712 505 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:01:11 has no hits.

BS05650.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:17:52 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:49 Download gff for BS05650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18104-PA 1..964 17..980 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:56:19 Download gff for BS05650.5prime
Subject Subject Range Query Range Percent Splice Strand
arg-RA 95..1058 17..980 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:40:59 Download gff for BS05650.5prime
Subject Subject Range Query Range Percent Splice Strand
arg-RA 78..1041 17..980 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:40:59 Download gff for BS05650.5prime
Subject Subject Range Query Range Percent Splice Strand
X 509512..509716 17..221 100 -> Plus
X 509910..510113 222..425 100 -> Plus
X 510175..510361 426..612 100 -> Plus
X 526502..526601 613..712 100 -> Plus
X 527559..527826 713..980 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:56:19 Download gff for BS05650.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 403545..403749 17..221 100 -> Plus
arm_X 403943..404146 222..425 100 -> Plus
arm_X 404208..404394 426..612 100 -> Plus
arm_X 420535..420634 613..712 100 -> Plus
arm_X 421592..421859 713..980 98   Plus

BS05650.complete Sequence

1088 bp (1088 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635192

> BS05650.complete
GAAGTTATCAGTCGACATGTGGTGGAGCCGTAAATTTGCCTCAAGGTCTC
TCCGCCTCCACCGGCTCAAGAGCACCGGAAGCACTGCGCCCAGGGAACCT
GAGCAATCTCTAGGCATCATTGGAGTGCCCTTCGCAAAGGGGCAGGCCAA
GCAGGGCGTGGAACTGGCGCCAGATCTTCTCCGGCAGAGCAGTCTGCGTC
AGGTGCTTCAGAGCAGTCATGATGGCCTGGTGATACGGGACTACGGAAAT
CTGCAGTACGCCGTAGACGAGCCCCTTCTCCAGCAGCAGCGTGTGCACTA
TCACCACATCCGAAACTACGCGGACTTCATGGCCTGCAATCGGGCACTGA
TTGAACAGGTGAAACTCATGCTCGTGGAGAACACGCAGTTTTTAGCCATT
GGTGGTGATCATGCGATCGGCTTCGGATCCGTGGCCGGGCACCTGCAACA
CACGCCGAATTTGTCCCTGGTGTGGATCGACGCACATGCGGACATCAATC
TGCATAGCACCTCGCAGTCGGGCAACATCCATGGGATGCCTGTATCCTTT
CTGTTGGAACAGCTCCGTAACACCTGGCAGCACGCTGGCCTCCAGGAAAT
CGCGCCCAACTGCTTGCCCAAGGATCAGCTGGTTTACATCGGACTCCGGG
ACATTGACCCCTACGAGGCGTTCATCCTAAACAAAGTCGGAATACGCTAC
TATGCAATGGATACTATCGACCGGGTGGGCGTGCCCAAGATTATCGAGAT
GACGCTGGACGCCCTTAATCCGCAGAACAAGATCCACGTCAGCTTTGACA
TCGACGCCTTGGACAGCAATGTGGCGCCTAGCACTGGCACCGCGGTGCGC
GGTGGCCTCACGCTCCGCGAGGGAATCAGCATCGTGGAGGCACTCCGGGA
CACCAAGCGGGTGCAGGGCGTCGATCTGGTGGAGATCAACCCAAAGCTAG
GCAGCGAGCGCGACGTGCGCACCACTGTGGAGTCCGGCCTGGAGATACTG
AAGAGCATGTTCGGTTACCGGCGTTCGGGGCGCTGGAGCAACATCGATAC
CGGAATCCTTGGTAGCGATTAAAAGCTTTCTAGACCAT

BS05650.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
arg-RA 1056 CG18104-PA 1..1056 17..1072 5265 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
arg-RA 1243 CG18104-RA 78..1134 17..1073 5270 99.9 Plus
elav-RD 10506 CG4262-RD 9627..9832 426..221 1030 100 Minus
elav-RD 10506 CG4262-RD 10025..10229 221..17 1025 100 Minus
elav-RD 10506 CG4262-RD 9380..9567 612..425 940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 527562..527919 716..1073 1790 100 Plus
X 23542271 X 509909..510114 221..426 1030 100 Plus
X 23542271 X 509512..509716 17..221 1025 100 Plus
X 23542271 X 510174..510361 425..612 940 100 Plus
X 23542271 X 526501..526601 612..712 505 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:44:27 has no hits.

BS05650.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:43 Download gff for BS05650.complete
Subject Subject Range Query Range Percent Splice Strand
arg-RA 1..1056 17..1072 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:10 Download gff for BS05650.complete
Subject Subject Range Query Range Percent Splice Strand
arg-RA 95..1148 17..1070 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:56 Download gff for BS05650.complete
Subject Subject Range Query Range Percent Splice Strand
arg-RA 95..1148 17..1070 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:43 Download gff for BS05650.complete
Subject Subject Range Query Range Percent Splice Strand
arg-RA 95..1151 17..1073 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:17:19 Download gff for BS05650.complete
Subject Subject Range Query Range Percent Splice Strand
arg-RA 78..1131 17..1070 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:17:19 Download gff for BS05650.complete
Subject Subject Range Query Range Percent Splice Strand
X 510175..510361 426..612 100 -> Plus
X 526502..526601 613..712 100 -> Plus
X 509512..509716 17..221 100 -> Plus
X 509910..510113 222..425 100 -> Plus
X 527559..527916 713..1070 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:56 Download gff for BS05650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 403545..403749 17..221 100 -> Plus
arm_X 403943..404146 222..425 100 -> Plus
arm_X 404208..404394 426..612 100 -> Plus
arm_X 420535..420634 613..712 100 -> Plus
arm_X 421592..421949 713..1070 99   Plus

BS05650.pep Sequence

Translation from 16 to 1071

> BS05650.pep
MWWSRKFASRSLRLHRLKSTGSTAPREPEQSLGIIGVPFAKGQAKQGVEL
APDLLRQSSLRQVLQSSHDGLVIRDYGNLQYAVDEPLLQQQRVHYHHIRN
YADFMACNRALIEQVKLMLVENTQFLAIGGDHAIGFGSVAGHLQHTPNLS
LVWIDAHADINLHSTSQSGNIHGMPVSFLLEQLRNTWQHAGLQEIAPNCL
PKDQLVYIGLRDIDPYEAFILNKVGIRYYAMDTIDRVGVPKIIEMTLDAL
NPQNKIHVSFDIDALDSNVAPSTGTAVRGGLTLREGISIVEALRDTKRVQ
GVDLVEINPKLGSERDVRTTVESGLEILKSMFGYRRSGRWSNIDTGILGS
D*

BS05650.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
arg-PA 351 CG18104-PA 1..351 1..351 1814 100 Plus