Clone Sequence Records
BS05651.5prime Sequence
684 bp (683 high quality bases) assembled on 2005-12-02
> BS05651.5prime
GAAGTTATCAGTCGACATGTTCGTGGCCCGTAAAATTTCGCAAACTGCAA
GCCTGGCGGTGCGTGGCAAGCACACCCTACCGAAGCTGCCCTACGACTAT
GCCGCCCTGGAGCCTATCATCTGCCGGGAGATCATGGAGCTGCATCACCA
GAAGCACCACCAGACCTACGTCAACAATCTAAATGCCGCCGAGGAGCAGC
TGGAGGAGGCCAAGTCGAAGAGCGACACCACCAAGCTGATTCAGCTGGCT
CCTGCCCTGCGTTTCAATGGCGGTGGCCACATCAACCACACCATCTTCTG
GCAGAACCTCTCGCCCAACAAGACCCAGCCCAGCGATGATCTGAAGAAGG
CCATCGAGTCGCAGTGGAAGAGCCTCGAGGAGTTCAAAAAGGAGCTGACC
ACGCTGACCGTGGCGGTCCAGGGCTCCGGCTGGGGCTGGCTGGGCTTCAA
CAAGAAGTCGGGCAAACTGCAACTGGCCGCCCTGCCCAACCAGGATCCCC
TGGAGGCCTCCACCGGCCTGATCCCGCTCTTCGGCATCGATGTCTGGGAG
CACGCCTACTATCTGCAGTACAAGAACGTGCGTCCCTCCTACGTGGAGGC
CATCTGGGACATCGCCAACTGGGATGACATCTCGTGCCGCTTCCAGGAGG
CCAAGAAGCTCGGTTGCTAAAAGCTTTCTAGACC
BS05651.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8905-PA | 654 | Sod2-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sod2-RB | 1015 | CG8905-RB | 127..780 | 17..670 | 3270 | 100 | Plus |
| Sod2-RA | 884 | CG8905-RA | 127..780 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16773020..16773640 | 670..50 | 3105 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:07:20 has no hits.
BS05651.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:54 Download gff for
BS05651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod2-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:52 Download gff for
BS05651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8905-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:55:28 Download gff for
BS05651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod2-RA | 124..782 | 14..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:01:37 Download gff for
BS05651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod2-RA | 124..782 | 14..674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:01:37 Download gff for
BS05651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16773018..16773638 | 52..674 | 99 | <- | Minus |
| 2R | 16773755..16773792 | 14..51 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:55:28 Download gff for
BS05651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12660523..12661143 | 52..674 | 99 | <- | Minus |
| arm_2R | 12661260..12661297 | 14..51 | 97 | | Minus |
BS05651.3prime Sequence
684 bp (683 high quality bases) assembled on 2005-12-02
> BS05651.3prime
ATGGTCTAGAAAGCTTTTAGCAACCGAGCTTCTTGGCCTCCTGGAAGCGG
CACGAGATGTCATCCCAGTTGGCGATGTCCCAGATGGCCTCCACGTAGGA
GGGACGCACGTTCTTGTACTGCAGATAGTAGGCGTGCTCCCAGACATCGA
TGCCGAAGAGCGGGATCAGGCCGGTGGAGGCCTCCAGGGGATCCTGGTTG
GGCAGGGCGGCCAGTTGCAGTTTGCCCGACTTCTTGTTGAAGCCCAGCCA
GCCCCAGCCGGAGCCCTGGACCGCCACGGTCAGCGTGGTCAGCTCCTTTT
TGAACTCCTCGAGGCTCTTCCACTGCGACTCGATGGCCTTCTTCAGATCA
TCGCTGGGCTGGGTCTTGTTGGGCGAGAGGTTCTGCCAGAAGATGGTGTG
GTTGATGTGGCCACCGCCATTGAAACGCAGGGCAGGAGCCAGCTGAATCA
GCTTGGTGGTGTCGCTCTTCGACTTGGCCTCCTCCAGCTGCTCCTCGGCG
GCATTTAGATTGTTGACGTAGGTCTGGTGGTGCTTCTGGTGATGCAGCTC
CATGATCTCCCGGCAGATGATAGGCTCCAGGGCGGCATAGTCGTAGGGCA
GCTTCGGTAGGGTGTGCTTGCCACGCACCGCCAGGCTTGCAGTTTGCGAA
ATTTTACGGGCCACGAACATGTCGACTGATAACT
BS05651.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8905-PA | 654 | Sod2-RA | 1..654 | 670..17 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sod2-RB | 1015 | CG8905-RB | 127..780 | 670..17 | 3270 | 100 | Minus |
| Sod2-RA | 884 | CG8905-RA | 127..780 | 670..17 | 3270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16773020..16773640 | 17..637 | 3105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:03:23 has no hits.
BS05651.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:53 Download gff for
BS05651.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod2-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:50 Download gff for
BS05651.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8905-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:59:52 Download gff for
BS05651.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod2-RA | 124..782 | 13..673 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:29 Download gff for
BS05651.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod2-RA | 124..782 | 13..673 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:29 Download gff for
BS05651.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16773018..16773638 | 13..635 | 99 | <- | Plus |
| 2R | 16773755..16773792 | 636..673 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:59:52 Download gff for
BS05651.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12660523..12661143 | 13..635 | 99 | <- | Plus |
| arm_2R | 12661260..12661297 | 636..673 | 97 | | Plus |
BS05651.complete Sequence
686 bp (686 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635193
> BS05651.complete
GAAGTTATCAGTCGACATGTTCGTGGCCCGTAAAATTTCGCAAACTGCAA
GCCTGGCGGTGCGTGGCAAGCACACCCTACCGAAGCTGCCCTACGACTAT
GCCGCCCTGGAGCCTATCATCTGCCGGGAGATCATGGAGCTGCATCACCA
GAAGCACCACCAGACCTACGTCAACAATCTAAATGCCGCCGAGGAGCAGC
TGGAGGAGGCCAAGTCGAAGAGCGACACCACCAAGCTGATTCAGCTGGCT
CCTGCCCTGCGTTTCAATGGCGGTGGCCACATCAACCACACCATCTTCTG
GCAGAACCTCTCGCCCAACAAGACCCAGCCCAGCGATGATCTGAAGAAGG
CCATCGAGTCGCAGTGGAAGAGCCTCGAGGAGTTCAAAAAGGAGCTGACC
ACGCTGACCGTGGCGGTCCAGGGCTCCGGCTGGGGCTGGCTGGGCTTCAA
CAAGAAGTCGGGCAAACTGCAACTGGCCGCCCTGCCCAACCAGGATCCCC
TGGAGGCCTCCACCGGCCTGATCCCGCTCTTCGGCATCGATGTCTGGGAG
CACGCCTACTATCTGCAGTACAAGAACGTGCGTCCCTCCTACGTGGAGGC
CATCTGGGACATCGCCAACTGGGATGACATCTCGTGCCGCTTCCAGGAGG
CCAAGAAGCTCGGTTGCTAAAAGCTTTCTAGACCAT
BS05651.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sod2-RB | 654 | CG8905-PB | 1..654 | 17..670 | 3270 | 100 | Plus |
| Sod2-RA | 654 | CG8905-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sod2-RB | 1015 | CG8905-RB | 127..780 | 17..670 | 3270 | 100 | Plus |
| Sod2-RA | 884 | CG8905-RA | 127..780 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16773020..16773640 | 670..50 | 3105 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:07:25 has no hits.
BS05651.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:44 Download gff for
BS05651.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod2-RA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:30 Download gff for
BS05651.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod2-RA | 117..775 | 14..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:27 Download gff for
BS05651.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod2-RA | 132..778 | 22..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:44 Download gff for
BS05651.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod2-RA | 117..775 | 14..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:20 Download gff for
BS05651.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod2-RA | 132..778 | 22..668 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:20 Download gff for
BS05651.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16773022..16773638 | 52..668 | 100 | <- | Minus |
| 2R | 16773755..16773784 | 22..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:27 Download gff for
BS05651.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12660527..12661143 | 52..668 | 100 | <- | Minus |
| arm_2R | 12661260..12661289 | 22..51 | 100 | | Minus |
BS05651.pep Sequence
Translation from 16 to 669
> BS05651.pep
MFVARKISQTASLAVRGKHTLPKLPYDYAALEPIICREIMELHHQKHHQT
YVNNLNAAEEQLEEAKSKSDTTKLIQLAPALRFNGGGHINHTIFWQNLSP
NKTQPSDDLKKAIESQWKSLEEFKKELTTLTVAVQGSGWGWLGFNKKSGK
LQLAALPNQDPLEASTGLIPLFGIDVWEHAYYLQYKNVRPSYVEAIWDIA
NWDDISCRFQEAKKLGC*
BS05651.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sod2-PB | 217 | CG8905-PB | 1..217 | 1..217 | 1159 | 100 | Plus |
| Sod2-PA | 217 | CG8905-PA | 1..217 | 1..217 | 1159 | 100 | Plus |
