Clone Sequence Records
BS05652.3prime Sequence
813 bp (764 high quality bases) assembled on 2005-12-02
> BS05652.3prime
ATGGTCTAGAAAGCTTTCACCAGACAACTGCGCCGTCGGAGATCTTTTTG
TGGAAGTCGTAGAGACTGGGGAAGACATGATCTCGATCGATGTCCTCGCC
GTATTTCTTGACCAGATATGCGTAGCTCTTCTCGTGCACCAGCGCCGAGT
GCCAGCCCAGTTCCTTGGCGGCCAGATAATCAGTGGTGGGACCATCCCCA
ATGTGAAGGCACTCCTCCGGCTTGAGGTTCTTCAGACCCGACTTCTCCAT
TGCCTTTTGAAAGATTTGGGGGTCGGGCTTCTCGGCCTGCACCTCGTACG
AGTTAATTGCAAAGTCCAGGTACTGATCCAGCTTGGTGTTCTGCAGCAGA
GTCGGCAGCCGAGGATCGAAGTTGGCTATCACACCCAGCTTGCACTTCTC
CGGCTTCAACTCCTTGCGGAGCTGCTGAAGGAGTTCCACGCTGCCGTTGC
ATGGCTGCCAGCAAATGGAGGTTTTGTATAGCTCAATTAGGTGGTTGGAG
AAGTTGTGCAGCTTCTCGTCGGGAATGGCCGCTCCACTCTCCGCAAAAGT
TCCTGCTATCAGCTTACGCCACCATTGCTGCCATTCCATCTGGGGATTCG
TGTCGCGCCCAAAGTTGGGATAATCGCGGTTCATCTTGTACCAGTTGGCC
TTGAAGTTCTTGGCCAGCTCGTTGTTGTCGCATCGGGCTCCGAACAGGGC
TCCAATCTCGCCGTACTGCTTGCCGGGAGTGGTTCGGAATTGGAGCAGAG
TGTTGGTCACATCGAAGGTTATGAGGCGAAAGCGGCTGAAGCTGCGCATG
TCGACTGATAACT
BS05652.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3200-PA | 783 | Reg-2-RA | 1..783 | 799..17 | 3890 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-2-RA | 883 | CG3200-RA | 70..852 | 799..17 | 3900 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 605196..605735 | 17..556 | 2700 | 100 | Plus |
3L | 28110227 | 3L | 606340..606500 | 639..799 | 790 | 99.4 | Plus |
3L | 28110227 | 3L | 606196..606286 | 552..642 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:24:39 has no hits.
BS05652.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:55 Download gff for
BS05652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-PA | 1..783 | 17..799 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:53 Download gff for
BS05652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3200-PA | 1..783 | 17..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:52:21 Download gff for
BS05652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 56..858 | 11..813 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:57 Download gff for
BS05652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 56..858 | 11..813 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:57 Download gff for
BS05652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 605190..605731 | 11..552 | 99 | <- | Plus |
3L | 606197..606285 | 553..641 | 100 | <- | Plus |
3L | 606343..606512 | 642..813 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:52:21 Download gff for
BS05652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 605190..605731 | 11..552 | 99 | <- | Plus |
arm_3L | 606197..606285 | 553..641 | 100 | <- | Plus |
arm_3L | 606343..606512 | 642..813 | 96 | | Plus |
BS05652.5prime Sequence
813 bp (706 high quality bases) assembled on 2005-12-02
> BS05652.5prime
GAAGTTATCAGTCGACATGCGCAGCCTCAGCCGCTTTCGCCTCATAACCT
TCGATGTGACCAACACTCTGCTCCAATTCCGAACCACTCCCGGCAAGCAG
TACGGCGAGATTGGAGCCCTGTTCGGAGCCCGATGCGACAACAACGAGCT
GGCCAAGAACTTCAAGGCCAACTGGTACAAGATGAACCGCGATTATCCCA
ACTTTGGGCGCGACACGAATCCCCAGATGGAATGGCAGCAATGGTGGCGT
AAGCTGATAGCAGGAACTTTTGCGGAGAGTGGAGCGGCCATTCCCGACGA
GAAGCTGCACAACTTCTCCAACCACCTAATTGAGCTATACAAAACCTCCA
TTTGCTGGCAGCCATGCAACGGCAGCGTGGAACTCCTTCAGCAGCTCCGC
AAGGAGTTGAAGCCGGAGAAGTGCAAGCTGGGTGTGATAGCCAACTTCGA
TCCTCGGCTGCCGACTCTGCTGCAGAACACCAAGCTGGATCAGTACCTGG
ACTTTGCAATTAACTCGTACGAGGTGCAGGCCGAGAAGCCCGACCCCCAA
ATCTTTCAAAAGGCAATGGAGAAGTCGGGTCTGAAGAACCTCAAGCCGGA
GGAGTGCCTTCACATTGGGGATGGTCCCACCACTGATTATCTGGCCGCCA
AGGAACTGGGCTGGCACTCGGCGCTGGTGCACGAGAAGAGCTACGCATAT
CTGGTCAAGAAATACGGCGAGGACATCGATCGAGATCATGTCTTCTCCAG
TCTCTACGACTTCCACAAAAAGATCTCCGACGGCGCAGTTGTCTGGTGAA
AGCTTTCTAGAAC
BS05652.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3200-PA | 783 | Reg-2-RA | 1..783 | 17..799 | 3890 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-2-RA | 883 | CG3200-RA | 70..852 | 17..799 | 3900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 605196..605735 | 799..260 | 2685 | 99.8 | Minus |
3L | 28110227 | 3L | 606340..606500 | 177..17 | 805 | 100 | Minus |
3L | 28110227 | 3L | 606196..606286 | 264..174 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:48:23 has no hits.
BS05652.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:56 Download gff for
BS05652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:54 Download gff for
BS05652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3200-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:42:27 Download gff for
BS05652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 59..858 | 5..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:23:25 Download gff for
BS05652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 59..858 | 5..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:23:25 Download gff for
BS05652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 605190..605731 | 264..805 | 99 | <- | Minus |
3L | 606197..606285 | 175..263 | 100 | <- | Minus |
3L | 606343..606511 | 5..174 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:42:27 Download gff for
BS05652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 605190..605731 | 264..805 | 99 | <- | Minus |
arm_3L | 606197..606285 | 175..263 | 100 | <- | Minus |
arm_3L | 606343..606511 | 5..174 | 97 | | Minus |
BS05652.complete Sequence
815 bp (815 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635194
> BS05652.complete
GAAGTTATCAGTCGACATGCGCAGCCTCAGCCGCTTTCGCCTCATAACCT
TCGATGTGACCAACACTCTGCTCCAATTCCGAACCACTCCCGGCAAGCAG
TACGGCGAGATTGGAGCCCTGTTCGGAGCCCGATGCGACAACAACGAGCT
GGCCAAGAACTTCAAGGCCAACTGGTACAAGATGAACCGCGATTATCCCA
ACTTTGGGCGCGACACGAATCCCCAGATGGAATGGCAGCAATGGTGGCGT
AAGCTGATAGCAGGAACTTTTGCGGAGAGTGGAGCGGCCATTCCCGACGA
GAAGCTGCACAACTTCTCCAACCACCTAATTGAGCTATACAAAACCTCCA
TTTGCTGGCAGCCATGCAACGGCAGCGTGGAACTCCTTCAGCAGCTCCGC
AAGGAGTTGAAGCCGGAGAAGTGCAAGCTGGGTGTGATAGCCAACTTCGA
TCCTCGGCTGCCGACTCTGCTGCAGAACACCAAGCTGGATCAGTACCTGG
ACTTTGCAATTAACTCGTACGAGGTGCAGGCCGAGAAGCCCGACCCCCAA
ATCTTTCAAAAGGCAATGGAGAAGTCGGGTCTGAAGAACCTCAAGCCGGA
GGAGTGCCTTCACATTGGGGATGGTCCCACCACTGATTATCTGGCCGCCA
AGGAACTGGGCTGGCACTCGGCGCTGGTGCACGAGAAGAGCTACGCATAT
CTGGTCAAGAAATACGGCGAGGACATCGATCGAGATCATGTCTTCCCCAG
TCTCTACGACTTCCACAAAAAGATCTCCGACGGCGCAGTTGTCTGGTGAA
AGCTTTCTAGACCAT
BS05652.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-2-RA | 783 | CG3200-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-2-RA | 883 | CG3200-RA | 70..852 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 605196..605735 | 799..260 | 2700 | 100 | Minus |
3L | 28110227 | 3L | 606340..606500 | 177..17 | 805 | 100 | Minus |
3L | 28110227 | 3L | 606196..606286 | 264..174 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:41:27 has no hits.
BS05652.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:47 Download gff for
BS05652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:32 Download gff for
BS05652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 48..847 | 5..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:02 Download gff for
BS05652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 70..851 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:47 Download gff for
BS05652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 48..847 | 5..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:35 Download gff for
BS05652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 70..851 | 17..798 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:35 Download gff for
BS05652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 605197..605731 | 264..798 | 100 | <- | Minus |
3L | 606197..606285 | 175..263 | 100 | <- | Minus |
3L | 606343..606500 | 17..174 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:02 Download gff for
BS05652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 605197..605731 | 264..798 | 100 | <- | Minus |
arm_3L | 606197..606285 | 175..263 | 100 | <- | Minus |
arm_3L | 606343..606500 | 17..174 | 100 | | Minus |
BS05652.pep Sequence
Translation from 16 to 798
> BS05652.pep
MRSLSRFRLITFDVTNTLLQFRTTPGKQYGEIGALFGARCDNNELAKNFK
ANWYKMNRDYPNFGRDTNPQMEWQQWWRKLIAGTFAESGAAIPDEKLHNF
SNHLIELYKTSICWQPCNGSVELLQQLRKELKPEKCKLGVIANFDPRLPT
LLQNTKLDQYLDFAINSYEVQAEKPDPQIFQKAMEKSGLKNLKPEECLHI
GDGPTTDYLAAKELGWHSALVHEKSYAYLVKKYGEDIDRDHVFPSLYDFH
KKISDGAVVW*
BS05652.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-2-PA | 260 | CG3200-PA | 1..260 | 1..260 | 1412 | 100 | Plus |
CG15912-PA | 246 | CG15912-PA | 10..246 | 3..260 | 366 | 34 | Plus |