Clone BS05652 Report

Search the DGRC for BS05652

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptReg-2-RA
Protein status:BS05652.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05652.3prime Sequence

813 bp (764 high quality bases) assembled on 2005-12-02

> BS05652.3prime
ATGGTCTAGAAAGCTTTCACCAGACAACTGCGCCGTCGGAGATCTTTTTG
TGGAAGTCGTAGAGACTGGGGAAGACATGATCTCGATCGATGTCCTCGCC
GTATTTCTTGACCAGATATGCGTAGCTCTTCTCGTGCACCAGCGCCGAGT
GCCAGCCCAGTTCCTTGGCGGCCAGATAATCAGTGGTGGGACCATCCCCA
ATGTGAAGGCACTCCTCCGGCTTGAGGTTCTTCAGACCCGACTTCTCCAT
TGCCTTTTGAAAGATTTGGGGGTCGGGCTTCTCGGCCTGCACCTCGTACG
AGTTAATTGCAAAGTCCAGGTACTGATCCAGCTTGGTGTTCTGCAGCAGA
GTCGGCAGCCGAGGATCGAAGTTGGCTATCACACCCAGCTTGCACTTCTC
CGGCTTCAACTCCTTGCGGAGCTGCTGAAGGAGTTCCACGCTGCCGTTGC
ATGGCTGCCAGCAAATGGAGGTTTTGTATAGCTCAATTAGGTGGTTGGAG
AAGTTGTGCAGCTTCTCGTCGGGAATGGCCGCTCCACTCTCCGCAAAAGT
TCCTGCTATCAGCTTACGCCACCATTGCTGCCATTCCATCTGGGGATTCG
TGTCGCGCCCAAAGTTGGGATAATCGCGGTTCATCTTGTACCAGTTGGCC
TTGAAGTTCTTGGCCAGCTCGTTGTTGTCGCATCGGGCTCCGAACAGGGC
TCCAATCTCGCCGTACTGCTTGCCGGGAGTGGTTCGGAATTGGAGCAGAG
TGTTGGTCACATCGAAGGTTATGAGGCGAAAGCGGCTGAAGCTGCGCATG
TCGACTGATAACT

BS05652.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3200-PA 783 Reg-2-RA 1..783 799..17 3890 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-2-RA 883 CG3200-RA 70..852 799..17 3900 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 605196..605735 17..556 2700 100 Plus
3L 28110227 3L 606340..606500 639..799 790 99.4 Plus
3L 28110227 3L 606196..606286 552..642 455 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:24:39 has no hits.

BS05652.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:55 Download gff for BS05652.3prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-PA 1..783 17..799 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:53 Download gff for BS05652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3200-PA 1..783 17..799 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:52:21 Download gff for BS05652.3prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 56..858 11..813 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:57 Download gff for BS05652.3prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 56..858 11..813 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:57 Download gff for BS05652.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 605190..605731 11..552 99 <- Plus
3L 606197..606285 553..641 100 <- Plus
3L 606343..606512 642..813 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:52:21 Download gff for BS05652.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 605190..605731 11..552 99 <- Plus
arm_3L 606197..606285 553..641 100 <- Plus
arm_3L 606343..606512 642..813 96   Plus

BS05652.5prime Sequence

813 bp (706 high quality bases) assembled on 2005-12-02

> BS05652.5prime
GAAGTTATCAGTCGACATGCGCAGCCTCAGCCGCTTTCGCCTCATAACCT
TCGATGTGACCAACACTCTGCTCCAATTCCGAACCACTCCCGGCAAGCAG
TACGGCGAGATTGGAGCCCTGTTCGGAGCCCGATGCGACAACAACGAGCT
GGCCAAGAACTTCAAGGCCAACTGGTACAAGATGAACCGCGATTATCCCA
ACTTTGGGCGCGACACGAATCCCCAGATGGAATGGCAGCAATGGTGGCGT
AAGCTGATAGCAGGAACTTTTGCGGAGAGTGGAGCGGCCATTCCCGACGA
GAAGCTGCACAACTTCTCCAACCACCTAATTGAGCTATACAAAACCTCCA
TTTGCTGGCAGCCATGCAACGGCAGCGTGGAACTCCTTCAGCAGCTCCGC
AAGGAGTTGAAGCCGGAGAAGTGCAAGCTGGGTGTGATAGCCAACTTCGA
TCCTCGGCTGCCGACTCTGCTGCAGAACACCAAGCTGGATCAGTACCTGG
ACTTTGCAATTAACTCGTACGAGGTGCAGGCCGAGAAGCCCGACCCCCAA
ATCTTTCAAAAGGCAATGGAGAAGTCGGGTCTGAAGAACCTCAAGCCGGA
GGAGTGCCTTCACATTGGGGATGGTCCCACCACTGATTATCTGGCCGCCA
AGGAACTGGGCTGGCACTCGGCGCTGGTGCACGAGAAGAGCTACGCATAT
CTGGTCAAGAAATACGGCGAGGACATCGATCGAGATCATGTCTTCTCCAG
TCTCTACGACTTCCACAAAAAGATCTCCGACGGCGCAGTTGTCTGGTGAA
AGCTTTCTAGAAC

BS05652.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3200-PA 783 Reg-2-RA 1..783 17..799 3890 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-2-RA 883 CG3200-RA 70..852 17..799 3900 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 605196..605735 799..260 2685 99.8 Minus
3L 28110227 3L 606340..606500 177..17 805 100 Minus
3L 28110227 3L 606196..606286 264..174 455 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:48:23 has no hits.

BS05652.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:56 Download gff for BS05652.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-PA 1..783 17..799 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:54 Download gff for BS05652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3200-PA 1..783 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:42:27 Download gff for BS05652.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 59..858 5..805 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:23:25 Download gff for BS05652.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 59..858 5..805 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:23:25 Download gff for BS05652.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 605190..605731 264..805 99 <- Minus
3L 606197..606285 175..263 100 <- Minus
3L 606343..606511 5..174 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:42:27 Download gff for BS05652.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 605190..605731 264..805 99 <- Minus
arm_3L 606197..606285 175..263 100 <- Minus
arm_3L 606343..606511 5..174 97   Minus

BS05652.complete Sequence

815 bp (815 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635194

> BS05652.complete
GAAGTTATCAGTCGACATGCGCAGCCTCAGCCGCTTTCGCCTCATAACCT
TCGATGTGACCAACACTCTGCTCCAATTCCGAACCACTCCCGGCAAGCAG
TACGGCGAGATTGGAGCCCTGTTCGGAGCCCGATGCGACAACAACGAGCT
GGCCAAGAACTTCAAGGCCAACTGGTACAAGATGAACCGCGATTATCCCA
ACTTTGGGCGCGACACGAATCCCCAGATGGAATGGCAGCAATGGTGGCGT
AAGCTGATAGCAGGAACTTTTGCGGAGAGTGGAGCGGCCATTCCCGACGA
GAAGCTGCACAACTTCTCCAACCACCTAATTGAGCTATACAAAACCTCCA
TTTGCTGGCAGCCATGCAACGGCAGCGTGGAACTCCTTCAGCAGCTCCGC
AAGGAGTTGAAGCCGGAGAAGTGCAAGCTGGGTGTGATAGCCAACTTCGA
TCCTCGGCTGCCGACTCTGCTGCAGAACACCAAGCTGGATCAGTACCTGG
ACTTTGCAATTAACTCGTACGAGGTGCAGGCCGAGAAGCCCGACCCCCAA
ATCTTTCAAAAGGCAATGGAGAAGTCGGGTCTGAAGAACCTCAAGCCGGA
GGAGTGCCTTCACATTGGGGATGGTCCCACCACTGATTATCTGGCCGCCA
AGGAACTGGGCTGGCACTCGGCGCTGGTGCACGAGAAGAGCTACGCATAT
CTGGTCAAGAAATACGGCGAGGACATCGATCGAGATCATGTCTTCCCCAG
TCTCTACGACTTCCACAAAAAGATCTCCGACGGCGCAGTTGTCTGGTGAA
AGCTTTCTAGACCAT

BS05652.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-2-RA 783 CG3200-PA 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-2-RA 883 CG3200-RA 70..852 17..799 3915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 605196..605735 799..260 2700 100 Minus
3L 28110227 3L 606340..606500 177..17 805 100 Minus
3L 28110227 3L 606196..606286 264..174 455 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:41:27 has no hits.

BS05652.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:47 Download gff for BS05652.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:32 Download gff for BS05652.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 48..847 5..805 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:02 Download gff for BS05652.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 70..851 17..798 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:47 Download gff for BS05652.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 48..847 5..805 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:35 Download gff for BS05652.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 70..851 17..798 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:35 Download gff for BS05652.complete
Subject Subject Range Query Range Percent Splice Strand
3L 605197..605731 264..798 100 <- Minus
3L 606197..606285 175..263 100 <- Minus
3L 606343..606500 17..174 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:02 Download gff for BS05652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 605197..605731 264..798 100 <- Minus
arm_3L 606197..606285 175..263 100 <- Minus
arm_3L 606343..606500 17..174 100   Minus

BS05652.pep Sequence

Translation from 16 to 798

> BS05652.pep
MRSLSRFRLITFDVTNTLLQFRTTPGKQYGEIGALFGARCDNNELAKNFK
ANWYKMNRDYPNFGRDTNPQMEWQQWWRKLIAGTFAESGAAIPDEKLHNF
SNHLIELYKTSICWQPCNGSVELLQQLRKELKPEKCKLGVIANFDPRLPT
LLQNTKLDQYLDFAINSYEVQAEKPDPQIFQKAMEKSGLKNLKPEECLHI
GDGPTTDYLAAKELGWHSALVHEKSYAYLVKKYGEDIDRDHVFPSLYDFH
KKISDGAVVW*

BS05652.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-2-PA 260 CG3200-PA 1..260 1..260 1412 100 Plus
CG15912-PA 246 CG15912-PA 10..246 3..260 366 34 Plus