Clone Sequence Records
BS05653.3prime Sequence
818 bp (816 high quality bases) assembled on 2005-12-02
> BS05653.3prime
ATGGTCTAGAAAGCTTCTATAGGTTGCTTTTTCTCTTCCTCCGCTTGACA
TTCTCTGAATCCTCCACGGCCAACTTGAATTCCTTGACGACCTCGGGCAG
CGTCTCATCCGTCCCGTCCACCGTCCAGTTCTCCAGATGCGGTGGGCGGT
GGTGCAGAATGAAGGGATTAATGACGGCCGCCACACCCTGCGCATTGTTG
AGGTGAACGTGGTGGGTGCCCTGCACTTCGTGGAGCTCGAAGTGCGGGTT
GTTCTCCCTGAGGATGCCAATCACCTCGTCGCTCTGCTCGTCTATGTAGT
TCGACTCGGAGCCCTTGATCACGCAGTAGGGCACATTCTTGATGGTCCTG
GCCAGTTCAGCGGCGAAGGGAGGACTCGTATGGAACTCCGTGTAGTACTT
GCAGCGACCGTCGCGCGAGAAGAAGAACTTGGCCGGGAACTTGGTGGAAC
GGCTGATGTTGCGCTCCAGGATGTGGCGGCAGTTCTCCAGCTCCACCGAG
TAGTCGGTGCCTTTGTACAGGACCTGCTCCATCTCTGTGTAGGTATAGGC
CGGCGGCTCCTGGCGCTTGGAATTCGCAAATCGCTCGTCCTCCACAATGT
AGCCCTCGATGTTCTTGCGCAGATAGTCGATCTGCGAGGGGGGCTTCCTA
TAGCGGGTCTTCACTATATCTATGCTGACCAACATGTCGGTGCGATGTGG
GTACAGCGAAGCGAATACGAAGCACAGCATGGCGCTCATTGAGTGGGCCA
TCAGGGACACCTTCTGCCAGCGGTACTCCTCCATTACGCGCAGGATCACG
CACAGGTAGTCCACGAAG
BS05653.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-PA | 1074 | CG5707-RA | 273..1074 | 818..17 | 4010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-RC | 1714 | CG5707-RC | 685..1486 | 818..17 | 4010 | 100 | Minus |
| CG5707-RB | 1477 | CG5707-RB | 448..1249 | 818..17 | 4010 | 100 | Minus |
| CG5707-RA | 1533 | CG5707-RA | 504..1305 | 818..17 | 4010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2189388..2190189 | 17..818 | 4010 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:13:18 has no hits.
BS05653.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:57 Download gff for
BS05653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-PA | 273..1074 | 17..818 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:56 Download gff for
BS05653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-PA | 273..1074 | 17..818 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:46:44 Download gff for
BS05653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 504..1310 | 12..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:42 Download gff for
BS05653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 504..1310 | 12..818 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:42 Download gff for
BS05653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2189383..2190189 | 12..818 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:46:44 Download gff for
BS05653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2189383..2190189 | 12..818 | 99 | | Plus |
BS05653.5prime Sequence
891 bp (783 high quality bases) assembled on 2005-12-02
> BS05653.5prime
GAAGTTATCAGTCGACATGACATCGAATTCCGAAGGTCGAGGCAACCCCA
TCGAGACGCATGAACAGGAGCCCATGGACGTGCGCATCGACATGCCGTGG
GGTTATGTGGTGGGCAAGTGGTACGGCAATCGGCAGGTACGACCCATCCT
GGCGCTGCATGGCTGGCTGGACAACCTGGGCACGTGGGACAAATTGCTGC
CCCTGCTACCGAAGCACCTGGGAGTGCTGTGCATCGACCTGCCCGGCCAC
GGATACTCCTCGAAGCTGCCCGAGGGGATTGCCTACCACTTCGTGGACTA
CCTGTGCGTGATCCTGCGCGTAATGGAGGAGTACCGCTGGCAGAAGGTGT
CCCTGATGGCCCACTCAATGAGCGCCATGCTGTGCTTCGTATTCGCTTCG
CTGTACCCACATCGCACCGACATGTTGGTCAGCATAGATATAGTGAAGAC
CCGCTATAGGAAGCCCCCCTCGCAGATCGACTATCTGCGCAAGAACATCG
AGGGCTACATTGTGGAGGACGAGCGATTTGCGAATTCCAAGCGCCAGGAG
CCGCCGGCCTATACCTACACAGAGATGGAGCAGGTCCTGTACAAAGGCAC
CGACTACTCGGTGGAGCTGGAGAACTGCCGCCACATCCTGGAGCGCAACA
TCAGCCGTTCCACCAAGTTCCCGGCCAAGTTCTTCTTCTCGCGCGACGGT
CGCTGCAAGTACTACACGGAGTTCCATACGAGTCCTCCCTTCGCCGCTGA
ACTGGCCAGGACCATCAAGAATGTGCCCTACTGCGTGAATCAGGGCTCCG
AGTCGAACTACATAGACGAGCAGAGCGACGAGGTGATTGGCATCCTCAGG
GAGAACAACCCGCACTTCGAGCTCCACGAAGTGCANGGCAC
BS05653.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-PA | 1074 | CG5707-RA | 1..772 | 17..788 | 3860 | 100 | Plus |
| CG5707-PA | 1074 | CG5707-RA | 776..875 | 792..891 | 481 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-RA | 1533 | CG5707-RA | 232..1106 | 17..891 | 4319 | 99.7 | Plus |
| CG5707-RC | 1714 | CG5707-RC | 464..1287 | 68..891 | 4064 | 99.6 | Plus |
| CG5707-RB | 1477 | CG5707-RB | 227..1050 | 68..891 | 4064 | 99.6 | Plus |
| CG5707-RC | 1714 | CG5707-RC | 232..282 | 17..67 | 255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2189587..2190413 | 891..65 | 4079 | 99.5 | Minus |
| 3L | 28110227 | 3L | 2191939..2191990 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:23:04 has no hits.
BS05653.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:58 Download gff for
BS05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:58 Download gff for
BS05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:32 Download gff for
BS05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 232..1106 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:45 Download gff for
BS05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 232..1106 | 17..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:45 Download gff for
BS05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2189587..2190410 | 68..891 | 99 | <- | Minus |
| 3L | 2191940..2191990 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:32 Download gff for
BS05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2189587..2190410 | 68..891 | 99 | <- | Minus |
| arm_3L | 2191940..2191990 | 17..67 | 100 | | Minus |
BS05653.complete Sequence
1106 bp (1106 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635195
> BS05653.complete
GAAGTTATCAGTCGACATGACATCGAATTCCGAAGGTCGAGGCAACCCCA
TCGAGACGCATGAACAGGAGCCCATGGACGTGCGCATCGACATGCCGTGG
GGTTATGTGGTGGGCAAGTGGTACGGCAATCGGCAGGTACGACCCATCCT
GGCGCTGCATGGCTGGCTGGACAACCTGGGCACGTGGGACAAATTGCTGC
CCCTGCTACCGAAGCACCTGGGAGTGCTGTGCATCGACCTGCCCGGCCAC
GGATACTCCTCGAAGCTGCCCGAGGGGATTGCCTACCACTTCGTGGACTA
CCTGTGCGTGATCCTGCGCGTAATGGAGGAGTACCGCTGGCAGAAGGTGT
CCCTGATGGCCCACTCAATGAGCGCCATGCTGTGCTTCGTATTCGCTTCG
CTGTACCCACATCGCACCGACATGTTGGTCAGCATAGATATAGTGAAGAC
CCGCTATAGGAAGCCCCCCTCGCAGATCGACTATCTGCGCAAGAACATCG
AGGGCTACATTGTGGAGGACGAGCGATTTGCGAATTCCAAGCGCCAGGAG
CCGCCGGCCTATACCTACACAGAGATGGAGCAGGTCCTGTACAAAGGCAC
CGACTACTCGGTGGAGCTGGAGAACTGCCGCCACATCCTGGAGCGCAACA
TCAGCCGTTCCACCAAGTTCCCGGCCAAGTTCTTCTTCTCGCGCGACGGT
CGCTGCAAGTACTACACGGAGTTCCATACGAGTCCTCCCTTCGCCGCTGA
ACTGGCCAGGACCATCAAGAATGTGCCCTACTGCGTGATCAAGGGCTCCG
AGTCGAACTACATAGACGAGCAGAGCGACGAGGTGATTGGCATCCTCAGG
GAGAACAACCCGCACTTCGAGCTCCACGAAGTGCAGGGCACCCACCACGT
TCACCTCAACAATGCGCAGGGTGTGGCGGCCGTCATTAATCCCTTCATTC
TGCACCACCGCCCACCGCATCTGGAGAACTGGACGGTGGACGGGACGGAT
GAGACGCTGCCCGAGGTCGTCAAGGAATTCAAGTTGGCCGTGGAGGATTC
AGAGAATGTCAAGCGGAGGAAGAGAAAAAGCAACCTATAGAAGCTTTCTA
GACCAT
BS05653.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-RA | 1074 | CG5707-PA | 1..1074 | 17..1090 | 5370 | 100 | Plus |
| CG5707-RC | 1086 | CG5707-PC | 64..1086 | 68..1090 | 5115 | 100 | Plus |
| CG5707-RB | 1086 | CG5707-PB | 64..1086 | 68..1090 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-RA | 1533 | CG5707-RA | 232..1305 | 17..1090 | 5370 | 100 | Plus |
| CG5707-RC | 1714 | CG5707-RC | 464..1486 | 68..1090 | 5115 | 100 | Plus |
| CG5707-RB | 1477 | CG5707-RB | 227..1249 | 68..1090 | 5115 | 100 | Plus |
| CG5707-RC | 1714 | CG5707-RC | 232..282 | 17..67 | 255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2189388..2190413 | 1090..65 | 5130 | 100 | Minus |
| 3L | 28110227 | 3L | 2191939..2191990 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:49:22 has no hits.
BS05653.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:48 Download gff for
BS05653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 1..1074 | 17..1090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:33 Download gff for
BS05653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 191..1269 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:40 Download gff for
BS05653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 232..1305 | 17..1090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:48 Download gff for
BS05653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 191..1269 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:25 Download gff for
BS05653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 232..1305 | 17..1090 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:25 Download gff for
BS05653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2189388..2190410 | 68..1090 | 100 | <- | Minus |
| 3L | 2191940..2191990 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:40 Download gff for
BS05653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2189388..2190410 | 68..1090 | 100 | <- | Minus |
| arm_3L | 2191940..2191990 | 17..67 | 100 | | Minus |
BS05653.pep Sequence
Translation from 16 to 1089
> BS05653.pep
MTSNSEGRGNPIETHEQEPMDVRIDMPWGYVVGKWYGNRQVRPILALHGW
LDNLGTWDKLLPLLPKHLGVLCIDLPGHGYSSKLPEGIAYHFVDYLCVIL
RVMEEYRWQKVSLMAHSMSAMLCFVFASLYPHRTDMLVSIDIVKTRYRKP
PSQIDYLRKNIEGYIVEDERFANSKRQEPPAYTYTEMEQVLYKGTDYSVE
LENCRHILERNISRSTKFPAKFFFSRDGRCKYYTEFHTSPPFAAELARTI
KNVPYCVIKGSESNYIDEQSDEVIGILRENNPHFELHEVQGTHHVHLNNA
QGVAAVINPFILHHRPPHLENWTVDGTDETLPEVVKEFKLAVEDSENVKR
RKRKSNL*
BS05653.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-PA | 357 | CG5707-PA | 1..357 | 1..357 | 1929 | 100 | Plus |
| CG5707-PC | 361 | CG5707-PC | 16..361 | 12..357 | 1841 | 98.6 | Plus |
| CG5707-PB | 361 | CG5707-PB | 16..361 | 12..357 | 1841 | 98.6 | Plus |
| CG15879-PA | 342 | CG15879-PA | 8..319 | 21..331 | 877 | 49.7 | Plus |
| CG5704-PB | 335 | CG5704-PB | 12..316 | 22..329 | 799 | 49.2 | Plus |
