Clone BS05654 Report

Search the DGRC for BS05654

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG18812-RC
Protein status:BS05654.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05654.3prime Sequence

812 bp (769 high quality bases) assembled on 2005-12-02

> BS05654.3prime
ATGGTCTAGAAAGCTTCTACGAGGCAGTCGGCACAGGATTGAAGTAATGC
AGGCCATTGGTCGCCATGTCGTACTCGGTGATGTAGGCGGGAATTTCCAG
CTGATCCTTGGTGATGGCCGAGTACAGGTGCTCCACACCCGGAAGCGAGT
GCACCTTGGCCTTGATGGCAGGCGCCATGAACGTGGTGAACCACCAGGTC
ATCATCTTAGTCCAGAAAGTGGGGTGCACGATATAGAAGGCCTTCAGGTT
CTTCTTGTATTTGTAAGGCAACACACTGTAGACCTCACGCAGCCAGTGCA
GCGATGGATAGTTGTTCGTGGATGTCAGCGTGTGGAAGTACGAGATGACA
TAGTCTCCTTTAACGATGGGATCCAGTAGCTTAATCAGATATAGCAAGGC
CTTTTCCAGGTCAATGTTCTGGGCGGGGAACCATTTGCCGCAGAACACAA
TCACAGGCCGACCCAGGCGGTCCACGCCGCTCTGGTAAAGGCAGCCGATG
CCGGACACCTCCGTCAAATCCTCGACTTGGGCACGACGCAGTAGGCGCTC
GTATCTTTCCTGATGCTCAATGCCCTCGACTCCCTCGGAAATGACATTCT
CGTAAACTCCGGTGCGTGGTCGATCACTGAGCAGGTGCTGCCGGTCCAGA
TCGCGCTGAAGCTGAGCCTGCAATCCGCTGCTGTACGAATTCAGGCTGAG
ACCGTTCATATCCCGAGCTCCGTACTCCAGATCCGAACTATTGCCCTCCA
TGTCGTGTGGACTCACGTCTGAATCGTCGTCGGCTAAATGATGACGCATG
TGGACACTGTGC

BS05654.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG18812-PC 1623 CG18812-RC 828..1623 812..17 3980 100 Minus
CG18812-PB 735 CG18812-RB 1..735 751..17 3675 100 Minus
CG18812-PA 654 CG18812-RA 110..654 561..17 2725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18812-RC 2689 CG18812-RC 1078..1874 812..16 3985 100 Minus
CG18812-RD 1719 CG18812-RD 137..904 783..16 3840 100 Minus
CG18812-RB 3362 CG18812-RB 141..908 783..16 3840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7719376..7719574 62..260 995 100 Plus
2R 25286936 2R 7719842..7719998 400..556 785 100 Plus
2R 25286936 2R 7719641..7719782 261..402 710 100 Plus
2R 25286936 2R 7725868..7725997 656..785 650 100 Plus
2R 25286936 2R 7725689..7725792 555..658 520 100 Plus
2R 25286936 2R 7719261..7719307 16..62 235 100 Plus
Blast to na_te.dros performed on 2015-01-30 15:18:43 has no hits.

BS05654.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:59 Download gff for BS05654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18812-PC 828..1623 17..812 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:59 Download gff for BS05654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18812-PC 828..1623 17..812 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:12:08 Download gff for BS05654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18812-RC 1078..1874 16..812 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:26 Download gff for BS05654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18812-RC 1078..1874 16..812 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:26 Download gff for BS05654.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7719261..7719306 16..61 100 <- Plus
2R 7719376..7719574 62..260 100 <- Plus
2R 7719641..7719780 261..400 100 <- Plus
2R 7719843..7719996 401..554 100 <- Plus
2R 7725689..7725789 555..655 100 <- Plus
2R 7725868..7725995 656..783 100 <- Plus
2R 7727942..7727970 784..812 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:12:08 Download gff for BS05654.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3606766..3606811 16..61 100 <- Plus
arm_2R 3606881..3607079 62..260 100 <- Plus
arm_2R 3607146..3607285 261..400 100 <- Plus
arm_2R 3607348..3607501 401..554 100 <- Plus
arm_2R 3613194..3613294 555..655 100 <- Plus
arm_2R 3613373..3613500 656..783 100 <- Plus
arm_2R 3615447..3615475 784..812 100   Plus

BS05654.5prime Sequence

879 bp (695 high quality bases) assembled on 2005-12-02

> BS05654.5prime
GAAGTTATCAGTCGACATGCGTCTCGACACGAACTCAAATGTGGACTTCA
AAGCATTCGAATCCAGCTCAAGCTCATGTCCTGTCAAATTGGATAACCTG
GCCACCTGGGGTGGCTCACAGAAAACAGACACACGACTGCCGATCACGGA
CTACTCCAATCTGGGCGGACCCCGGCACAATCGCAGTCCCTTTCCACTCT
GCAAAGATGTCAACAATCGCTTCGTAATCTGGGATGGGGACATGACCACT
CTGGAGGTGGACGCCATCACAAACACCAGCGATGAGACTCTGACTGAAAG
CAATAGCATATCGGAGCGCATCTTCGCAGTGGCTGGTAATCAGCTGCGCG
AGGAGCTGAGCACAACGGTTAAAGAATGCCGCACTGGCGATGTGCGCATC
ACGCGTGGATACAATCTGCCCGCCAAGTACGTGCTGCATACAGTGGCACC
TGCCTACAGGGAAAAGTTCAAGACGGCTGCCGAGAATACGCTGCACTGCT
GCTACAGAAATGTCCTGTGCAAGGCGAAGGAACTTAACCTGCACACCATC
GCCCTGTGCAACATCAGTGCCCACCAGAAGAGCTTTCCCGCGGATGTGGC
AGCCCACATTGCCCTGCGTACCATTCGTCGCTATCTGGACAAGTGCACCC
TGCAGGTTGTGATATTGTGCGTGGGCAGCAGCGAGCGCGGCACTTACGAG
GTCCTGGCCCCACTGTACTTCCCCAGGGATCAGCTGGAGGAGCGCAGTGC
CCTGTGGCAGCTGCCCAANGACATTGGCGGCGAGTTCGGGGAGCCGCAAC
ATCCGGATCCCGATCGCCAGATACGCATCATCCGCAATCCGCAGCACAGT
GTCCACATGCGTCATCATTTAGCCGACGA

BS05654.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG18812-PC 1623 CG18812-RC 1..863 17..879 4296 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG18812-RF 2894 CG18812-RF 474..1336 17..879 4304 99.9 Plus
CG18812-RC 2689 CG18812-RC 251..1113 17..879 4304 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7727942..7728196 872..618 1264 99.6 Minus
2R 25286936 2R 7729429..7729581 232..80 765 100 Minus
2R 25286936 2R 7729016..7729163 374..227 725 99.3 Minus
2R 25286936 2R 7728825..7728959 507..373 675 100 Minus
2R 25286936 2R 7728267..7728381 619..505 575 100 Minus
2R 25286936 2R 7729642..7729704 79..17 315 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:22:47 has no hits.

BS05654.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:00 Download gff for BS05654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18812-PC 1..862 17..878 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:01 Download gff for BS05654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18812-PC 1..862 17..878 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:26 Download gff for BS05654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18812-RC 247..1112 10..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:16 Download gff for BS05654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18812-RC 247..1112 10..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:16 Download gff for BS05654.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7729642..7729715 4..79 93   Minus
2R 7727937..7728196 618..878 98 <- Minus
2R 7728269..7728378 508..617 100 <- Minus
2R 7728825..7728957 375..507 100 <- Minus
2R 7729016..7729158 232..374 100 <- Minus
2R 7729430..7729581 80..231 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:26 Download gff for BS05654.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3616330..3616462 375..507 100 <- Minus
arm_2R 3616521..3616663 232..374 100 <- Minus
arm_2R 3616935..3617086 80..231 100 <- Minus
arm_2R 3617147..3617220 4..79 93   Minus
arm_2R 3615442..3615701 618..878 98 <- Minus
arm_2R 3615774..3615883 508..617 100 <- Minus

BS05654.complete Sequence

1655 bp assembled on 2007-10-26

GenBank Submission: FJ635196

> BS05654.complete
GAAGTTATCAGTCGACATGCGTCTCGACACGAACTCAAATGTGGACTTCA
AAGCATTCGAATCCAGCTCAAGCTCATGTCCTGTCAAATTGGATAACCTG
GCCACCTGGGGTGGCTCACAGAAAACAGACACACGACTGCCGATCACGGA
CTACTCCAATCTGGGCGGACCCCGGCACAATCGCAGTCCCTTTCCACTCT
GCAAAGATGTCAACAATCGCTTCGTAATCTGGGATGGGGACATGACCACT
CTGGAGGTGGACGCCATCACAAACACCAGCGATGAGACTCTGACTGAAAG
CAATAGCATATCGGAGCGCATCTTCGCAGTGGCTGGTAATCAGCTGCGCG
AGGAGCTGAGCACAACGGTTAAAGAATGCCGCACTGGCGATGTGCGCATC
ACGCGTGGATACAATCTGCCCGCCAAGTACGTGCTGCATACAGTGGCACC
TGCCTACAGGGAAAAGTTCAAGACGGCTGCCGAGAATACGCTGCACTGCT
GCTACAGAAATGTCCTGTGCAAGGCGAAGGAACTTAACCTGCACACCATC
GCCCTGTGCAACATCAGTGCCCACCAGAAGAGCTTTCCCGCGGATGTGGC
AGCCCACATTGCCCTGCGTACCATTCGTCGCTATCTGGACAAGTGCACCC
TGCAGGTTGTGATATTGTGCGTGGGCAGCAGCGAGCGCGGCACTTACGAG
GTCCTGGCCCCACTGTACTTCCCCAGGGATCAGCTGGAGGAGCGCAGTGC
CCTGTGGCAGCTGCCCAAGGACATTGGCGGCGAGTTCGGGGAGCCGCAAC
ATCCGGATCCCGATCGCCAGATACGCATCATCCGCAATCCGCAGCACAGT
GTCCACATGCGTCATCATTTAGCCGACGACGATTCAGACGTGAGTCCACA
CGACATGGAGGGCAATAGTTCGGATCTGGAGTACGGAGCTCGGGATATGA
ACGGTCTCAGCCTGAATTCGTACAGCAGCGGATTGCAGGCTCAGCTTCAG
CGCGATCTGGACCGGCAGCACCTGCTCAGTGATCGACCACGCACCGGAGT
TTACGAGAATGTCATTTCCGAGGGAGTCGAGGGCATTGAGCATCAGGAAA
GATACGAGCGCCTACTGCGTCGTGCCCAAGTCGAGGATTTGACGGAGGTG
TCCGGCATCGGCTGCCTTTACCAGAGCGGCGTGGACCGCCTGGGTCGGCC
TGTGATTGTGTTCTGCGGCAAATGGTTCCCCGCCCAGAACATTGACCTGG
AAAAGGCCTTGCTATATCTGATTAAGCTACTGGATCCCATCGTTAAAGGA
GACTATGTCATCTCGTACTTCCACACGCTGACATCCACGAACAACTATCC
ATCGCTGCACTGGCTGCGTGAGGTCTACAGTGTGTTGCCTTACAAATACA
AGAAGAACCTGAAGGCCTTCTATATCGTGCACCCCACTTTCTGGACTAAG
ATGATGACCTGGTGGTTCACCACGTTCATGGCGCCTGCCATCAAGGCCAA
GGTGCACTCGCTTCCGGGTGTGGAGCACCTGTACTCGGCCATCACCAAGG
ATCAGCTGGAAATTCCCGCCTACATCACCGAGTACGACATGGCGACCAAT
GGCCTGCATTACTTCAATCCTGTGCCGACTGCCTCGTAGAAGCTTTCTAG
ACCAT

BS05654.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18812-RC 1623 CG18812-PC 1..1623 17..1639 8115 100 Plus
CG18812-RF 1605 CG18812-PF 1..1605 17..1639 7810 98.9 Plus
CG18812-RD 795 CG18812-PD 29..795 873..1639 3835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG18812-RC 2689 CG18812-RC 251..1874 17..1640 8120 100 Plus
CG18812-RF 2894 CG18812-RF 474..2079 17..1640 7815 98.9 Plus
CG18812-RD 1719 CG18812-RD 137..904 873..1640 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7727942..7728196 872..618 1275 100 Minus
2R 25286936 2R 7719376..7719574 1594..1396 995 100 Minus
2R 25286936 2R 7719842..7719998 1256..1100 785 100 Minus
2R 25286936 2R 7729429..7729581 232..80 765 100 Minus
2R 25286936 2R 7729016..7729163 374..227 725 99.3 Minus
2R 25286936 2R 7719641..7719782 1395..1254 710 100 Minus
2R 25286936 2R 7728825..7728959 507..373 675 100 Minus
2R 25286936 2R 7725868..7725997 1000..871 650 100 Minus
2R 25286936 2R 7728267..7728381 619..505 575 100 Minus
2R 25286936 2R 7725689..7725792 1101..998 520 100 Minus
2R 25286936 2R 7729642..7729704 79..17 315 100 Minus
2R 25286936 2R 7719261..7719307 1640..1594 235 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:15:16 has no hits.

BS05654.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:59 Download gff for BS05654.complete
Subject Subject Range Query Range Percent Splice Strand
CG18812-RC 1..1623 17..1639 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:09 Download gff for BS05654.complete
Subject Subject Range Query Range Percent Splice Strand
CG18812-RC 244..1871 10..1640 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:56 Download gff for BS05654.complete
Subject Subject Range Query Range Percent Splice Strand
CG18812-RC 251..1873 17..1639 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:14 Download gff for BS05654.complete
Subject Subject Range Query Range Percent Splice Strand
CG18812-RC 248..1870 17..1639 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:22 Download gff for BS05654.complete
Subject Subject Range Query Range Percent Splice Strand
CG18812-RC 251..1873 17..1639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:22 Download gff for BS05654.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7728269..7728378 508..617 100 <- Minus
2R 7727942..7728196 618..872 100 <- Minus
2R 7728825..7728957 375..507 100 <- Minus
2R 7729016..7729158 232..374 100 <- Minus
2R 7729430..7729581 80..231 100 <- Minus
2R 7729642..7729704 17..79 100   Minus
2R 7719262..7719306 1595..1639 100 <- Minus
2R 7719843..7719996 1102..1255 100 <- Minus
2R 7719376..7719574 1396..1594 100 <- Minus
2R 7719641..7719780 1256..1395 100 <- Minus
2R 7725689..7725789 1001..1101 100 <- Minus
2R 7725868..7725995 873..1000 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:56 Download gff for BS05654.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3613373..3613500 873..1000 100 <- Minus
arm_2R 3616521..3616663 232..374 100 <- Minus
arm_2R 3615447..3615701 618..872 100 <- Minus
arm_2R 3615774..3615883 508..617 100 <- Minus
arm_2R 3616330..3616462 375..507 100 <- Minus
arm_2R 3606767..3606811 1595..1639 100 <- Minus
arm_2R 3606881..3607079 1396..1594 100 <- Minus
arm_2R 3607146..3607285 1256..1395 100 <- Minus
arm_2R 3607348..3607501 1102..1255 100 <- Minus
arm_2R 3613194..3613294 1001..1101 100 <- Minus
arm_2R 3616935..3617086 80..231 100 <- Minus
arm_2R 3617147..3617209 17..79 100   Minus

BS05654.pep Sequence

Translation from 16 to 1638

> BS05654.pep
MRLDTNSNVDFKAFESSSSSCPVKLDNLATWGGSQKTDTRLPITDYSNLG
GPRHNRSPFPLCKDVNNRFVIWDGDMTTLEVDAITNTSDETLTESNSISE
RIFAVAGNQLREELSTTVKECRTGDVRITRGYNLPAKYVLHTVAPAYREK
FKTAAENTLHCCYRNVLCKAKELNLHTIALCNISAHQKSFPADVAAHIAL
RTIRRYLDKCTLQVVILCVGSSERGTYEVLAPLYFPRDQLEERSALWQLP
KDIGGEFGEPQHPDPDRQIRIIRNPQHSVHMRHHLADDDSDVSPHDMEGN
SSDLEYGARDMNGLSLNSYSSGLQAQLQRDLDRQHLLSDRPRTGVYENVI
SEGVEGIEHQERYERLLRRAQVEDLTEVSGIGCLYQSGVDRLGRPVIVFC
GKWFPAQNIDLEKALLYLIKLLDPIVKGDYVISYFHTLTSTNNYPSLHWL
REVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFMAPAIKAKVHSLP
GVEHLYSAITKDQLEIPAYITEYDMATNGLHYFNPVPTAS*

BS05654.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18812-PC 540 CG18812-PC 1..540 1..540 2874 100 Plus
CG18812-PF 534 CG18812-PF 1..534 1..540 2826 98.9 Plus
CG18812-PD 264 CG18812-PD 10..264 286..540 1356 99.6 Plus
CG18812-PB 244 CG18812-PB 1..244 297..540 1298 100 Plus
CG18812-PA 217 CG18812-PA 37..217 360..540 973 99.4 Plus