Clone Sequence Records
BS05654.3prime Sequence
812 bp (769 high quality bases) assembled on 2005-12-02
> BS05654.3prime
ATGGTCTAGAAAGCTTCTACGAGGCAGTCGGCACAGGATTGAAGTAATGC
AGGCCATTGGTCGCCATGTCGTACTCGGTGATGTAGGCGGGAATTTCCAG
CTGATCCTTGGTGATGGCCGAGTACAGGTGCTCCACACCCGGAAGCGAGT
GCACCTTGGCCTTGATGGCAGGCGCCATGAACGTGGTGAACCACCAGGTC
ATCATCTTAGTCCAGAAAGTGGGGTGCACGATATAGAAGGCCTTCAGGTT
CTTCTTGTATTTGTAAGGCAACACACTGTAGACCTCACGCAGCCAGTGCA
GCGATGGATAGTTGTTCGTGGATGTCAGCGTGTGGAAGTACGAGATGACA
TAGTCTCCTTTAACGATGGGATCCAGTAGCTTAATCAGATATAGCAAGGC
CTTTTCCAGGTCAATGTTCTGGGCGGGGAACCATTTGCCGCAGAACACAA
TCACAGGCCGACCCAGGCGGTCCACGCCGCTCTGGTAAAGGCAGCCGATG
CCGGACACCTCCGTCAAATCCTCGACTTGGGCACGACGCAGTAGGCGCTC
GTATCTTTCCTGATGCTCAATGCCCTCGACTCCCTCGGAAATGACATTCT
CGTAAACTCCGGTGCGTGGTCGATCACTGAGCAGGTGCTGCCGGTCCAGA
TCGCGCTGAAGCTGAGCCTGCAATCCGCTGCTGTACGAATTCAGGCTGAG
ACCGTTCATATCCCGAGCTCCGTACTCCAGATCCGAACTATTGCCCTCCA
TGTCGTGTGGACTCACGTCTGAATCGTCGTCGGCTAAATGATGACGCATG
TGGACACTGTGC
BS05654.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-PC | 1623 | CG18812-RC | 828..1623 | 812..17 | 3980 | 100 | Minus |
CG18812-PB | 735 | CG18812-RB | 1..735 | 751..17 | 3675 | 100 | Minus |
CG18812-PA | 654 | CG18812-RA | 110..654 | 561..17 | 2725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:18:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-RC | 2689 | CG18812-RC | 1078..1874 | 812..16 | 3985 | 100 | Minus |
CG18812-RD | 1719 | CG18812-RD | 137..904 | 783..16 | 3840 | 100 | Minus |
CG18812-RB | 3362 | CG18812-RB | 141..908 | 783..16 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7719376..7719574 | 62..260 | 995 | 100 | Plus |
2R | 25286936 | 2R | 7719842..7719998 | 400..556 | 785 | 100 | Plus |
2R | 25286936 | 2R | 7719641..7719782 | 261..402 | 710 | 100 | Plus |
2R | 25286936 | 2R | 7725868..7725997 | 656..785 | 650 | 100 | Plus |
2R | 25286936 | 2R | 7725689..7725792 | 555..658 | 520 | 100 | Plus |
2R | 25286936 | 2R | 7719261..7719307 | 16..62 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:18:43 has no hits.
BS05654.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:17:59 Download gff for
BS05654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-PC | 828..1623 | 17..812 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:48:59 Download gff for
BS05654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-PC | 828..1623 | 17..812 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:12:08 Download gff for
BS05654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 1078..1874 | 16..812 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:26 Download gff for
BS05654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 1078..1874 | 16..812 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:26 Download gff for
BS05654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7719261..7719306 | 16..61 | 100 | <- | Plus |
2R | 7719376..7719574 | 62..260 | 100 | <- | Plus |
2R | 7719641..7719780 | 261..400 | 100 | <- | Plus |
2R | 7719843..7719996 | 401..554 | 100 | <- | Plus |
2R | 7725689..7725789 | 555..655 | 100 | <- | Plus |
2R | 7725868..7725995 | 656..783 | 100 | <- | Plus |
2R | 7727942..7727970 | 784..812 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:12:08 Download gff for
BS05654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3606766..3606811 | 16..61 | 100 | <- | Plus |
arm_2R | 3606881..3607079 | 62..260 | 100 | <- | Plus |
arm_2R | 3607146..3607285 | 261..400 | 100 | <- | Plus |
arm_2R | 3607348..3607501 | 401..554 | 100 | <- | Plus |
arm_2R | 3613194..3613294 | 555..655 | 100 | <- | Plus |
arm_2R | 3613373..3613500 | 656..783 | 100 | <- | Plus |
arm_2R | 3615447..3615475 | 784..812 | 100 | | Plus |
BS05654.5prime Sequence
879 bp (695 high quality bases) assembled on 2005-12-02
> BS05654.5prime
GAAGTTATCAGTCGACATGCGTCTCGACACGAACTCAAATGTGGACTTCA
AAGCATTCGAATCCAGCTCAAGCTCATGTCCTGTCAAATTGGATAACCTG
GCCACCTGGGGTGGCTCACAGAAAACAGACACACGACTGCCGATCACGGA
CTACTCCAATCTGGGCGGACCCCGGCACAATCGCAGTCCCTTTCCACTCT
GCAAAGATGTCAACAATCGCTTCGTAATCTGGGATGGGGACATGACCACT
CTGGAGGTGGACGCCATCACAAACACCAGCGATGAGACTCTGACTGAAAG
CAATAGCATATCGGAGCGCATCTTCGCAGTGGCTGGTAATCAGCTGCGCG
AGGAGCTGAGCACAACGGTTAAAGAATGCCGCACTGGCGATGTGCGCATC
ACGCGTGGATACAATCTGCCCGCCAAGTACGTGCTGCATACAGTGGCACC
TGCCTACAGGGAAAAGTTCAAGACGGCTGCCGAGAATACGCTGCACTGCT
GCTACAGAAATGTCCTGTGCAAGGCGAAGGAACTTAACCTGCACACCATC
GCCCTGTGCAACATCAGTGCCCACCAGAAGAGCTTTCCCGCGGATGTGGC
AGCCCACATTGCCCTGCGTACCATTCGTCGCTATCTGGACAAGTGCACCC
TGCAGGTTGTGATATTGTGCGTGGGCAGCAGCGAGCGCGGCACTTACGAG
GTCCTGGCCCCACTGTACTTCCCCAGGGATCAGCTGGAGGAGCGCAGTGC
CCTGTGGCAGCTGCCCAANGACATTGGCGGCGAGTTCGGGGAGCCGCAAC
ATCCGGATCCCGATCGCCAGATACGCATCATCCGCAATCCGCAGCACAGT
GTCCACATGCGTCATCATTTAGCCGACGA
BS05654.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-PC | 1623 | CG18812-RC | 1..863 | 17..879 | 4296 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-RF | 2894 | CG18812-RF | 474..1336 | 17..879 | 4304 | 99.9 | Plus |
CG18812-RC | 2689 | CG18812-RC | 251..1113 | 17..879 | 4304 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7727942..7728196 | 872..618 | 1264 | 99.6 | Minus |
2R | 25286936 | 2R | 7729429..7729581 | 232..80 | 765 | 100 | Minus |
2R | 25286936 | 2R | 7729016..7729163 | 374..227 | 725 | 99.3 | Minus |
2R | 25286936 | 2R | 7728825..7728959 | 507..373 | 675 | 100 | Minus |
2R | 25286936 | 2R | 7728267..7728381 | 619..505 | 575 | 100 | Minus |
2R | 25286936 | 2R | 7729642..7729704 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:22:47 has no hits.
BS05654.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:00 Download gff for
BS05654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-PC | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:01 Download gff for
BS05654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-PC | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:26 Download gff for
BS05654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 247..1112 | 10..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:16 Download gff for
BS05654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 247..1112 | 10..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:16 Download gff for
BS05654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7729642..7729715 | 4..79 | 93 | | Minus |
2R | 7727937..7728196 | 618..878 | 98 | <- | Minus |
2R | 7728269..7728378 | 508..617 | 100 | <- | Minus |
2R | 7728825..7728957 | 375..507 | 100 | <- | Minus |
2R | 7729016..7729158 | 232..374 | 100 | <- | Minus |
2R | 7729430..7729581 | 80..231 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:26 Download gff for
BS05654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3616330..3616462 | 375..507 | 100 | <- | Minus |
arm_2R | 3616521..3616663 | 232..374 | 100 | <- | Minus |
arm_2R | 3616935..3617086 | 80..231 | 100 | <- | Minus |
arm_2R | 3617147..3617220 | 4..79 | 93 | | Minus |
arm_2R | 3615442..3615701 | 618..878 | 98 | <- | Minus |
arm_2R | 3615774..3615883 | 508..617 | 100 | <- | Minus |
BS05654.complete Sequence
1655 bp assembled on 2007-10-26
GenBank Submission: FJ635196
> BS05654.complete
GAAGTTATCAGTCGACATGCGTCTCGACACGAACTCAAATGTGGACTTCA
AAGCATTCGAATCCAGCTCAAGCTCATGTCCTGTCAAATTGGATAACCTG
GCCACCTGGGGTGGCTCACAGAAAACAGACACACGACTGCCGATCACGGA
CTACTCCAATCTGGGCGGACCCCGGCACAATCGCAGTCCCTTTCCACTCT
GCAAAGATGTCAACAATCGCTTCGTAATCTGGGATGGGGACATGACCACT
CTGGAGGTGGACGCCATCACAAACACCAGCGATGAGACTCTGACTGAAAG
CAATAGCATATCGGAGCGCATCTTCGCAGTGGCTGGTAATCAGCTGCGCG
AGGAGCTGAGCACAACGGTTAAAGAATGCCGCACTGGCGATGTGCGCATC
ACGCGTGGATACAATCTGCCCGCCAAGTACGTGCTGCATACAGTGGCACC
TGCCTACAGGGAAAAGTTCAAGACGGCTGCCGAGAATACGCTGCACTGCT
GCTACAGAAATGTCCTGTGCAAGGCGAAGGAACTTAACCTGCACACCATC
GCCCTGTGCAACATCAGTGCCCACCAGAAGAGCTTTCCCGCGGATGTGGC
AGCCCACATTGCCCTGCGTACCATTCGTCGCTATCTGGACAAGTGCACCC
TGCAGGTTGTGATATTGTGCGTGGGCAGCAGCGAGCGCGGCACTTACGAG
GTCCTGGCCCCACTGTACTTCCCCAGGGATCAGCTGGAGGAGCGCAGTGC
CCTGTGGCAGCTGCCCAAGGACATTGGCGGCGAGTTCGGGGAGCCGCAAC
ATCCGGATCCCGATCGCCAGATACGCATCATCCGCAATCCGCAGCACAGT
GTCCACATGCGTCATCATTTAGCCGACGACGATTCAGACGTGAGTCCACA
CGACATGGAGGGCAATAGTTCGGATCTGGAGTACGGAGCTCGGGATATGA
ACGGTCTCAGCCTGAATTCGTACAGCAGCGGATTGCAGGCTCAGCTTCAG
CGCGATCTGGACCGGCAGCACCTGCTCAGTGATCGACCACGCACCGGAGT
TTACGAGAATGTCATTTCCGAGGGAGTCGAGGGCATTGAGCATCAGGAAA
GATACGAGCGCCTACTGCGTCGTGCCCAAGTCGAGGATTTGACGGAGGTG
TCCGGCATCGGCTGCCTTTACCAGAGCGGCGTGGACCGCCTGGGTCGGCC
TGTGATTGTGTTCTGCGGCAAATGGTTCCCCGCCCAGAACATTGACCTGG
AAAAGGCCTTGCTATATCTGATTAAGCTACTGGATCCCATCGTTAAAGGA
GACTATGTCATCTCGTACTTCCACACGCTGACATCCACGAACAACTATCC
ATCGCTGCACTGGCTGCGTGAGGTCTACAGTGTGTTGCCTTACAAATACA
AGAAGAACCTGAAGGCCTTCTATATCGTGCACCCCACTTTCTGGACTAAG
ATGATGACCTGGTGGTTCACCACGTTCATGGCGCCTGCCATCAAGGCCAA
GGTGCACTCGCTTCCGGGTGTGGAGCACCTGTACTCGGCCATCACCAAGG
ATCAGCTGGAAATTCCCGCCTACATCACCGAGTACGACATGGCGACCAAT
GGCCTGCATTACTTCAATCCTGTGCCGACTGCCTCGTAGAAGCTTTCTAG
ACCAT
BS05654.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:15:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-RC | 1623 | CG18812-PC | 1..1623 | 17..1639 | 8115 | 100 | Plus |
CG18812-RF | 1605 | CG18812-PF | 1..1605 | 17..1639 | 7810 | 98.9 | Plus |
CG18812-RD | 795 | CG18812-PD | 29..795 | 873..1639 | 3835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-RC | 2689 | CG18812-RC | 251..1874 | 17..1640 | 8120 | 100 | Plus |
CG18812-RF | 2894 | CG18812-RF | 474..2079 | 17..1640 | 7815 | 98.9 | Plus |
CG18812-RD | 1719 | CG18812-RD | 137..904 | 873..1640 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7727942..7728196 | 872..618 | 1275 | 100 | Minus |
2R | 25286936 | 2R | 7719376..7719574 | 1594..1396 | 995 | 100 | Minus |
2R | 25286936 | 2R | 7719842..7719998 | 1256..1100 | 785 | 100 | Minus |
2R | 25286936 | 2R | 7729429..7729581 | 232..80 | 765 | 100 | Minus |
2R | 25286936 | 2R | 7729016..7729163 | 374..227 | 725 | 99.3 | Minus |
2R | 25286936 | 2R | 7719641..7719782 | 1395..1254 | 710 | 100 | Minus |
2R | 25286936 | 2R | 7728825..7728959 | 507..373 | 675 | 100 | Minus |
2R | 25286936 | 2R | 7725868..7725997 | 1000..871 | 650 | 100 | Minus |
2R | 25286936 | 2R | 7728267..7728381 | 619..505 | 575 | 100 | Minus |
2R | 25286936 | 2R | 7725689..7725792 | 1101..998 | 520 | 100 | Minus |
2R | 25286936 | 2R | 7729642..7729704 | 79..17 | 315 | 100 | Minus |
2R | 25286936 | 2R | 7719261..7719307 | 1640..1594 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:15:16 has no hits.
BS05654.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:59 Download gff for
BS05654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 1..1623 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:09 Download gff for
BS05654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 244..1871 | 10..1640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:56 Download gff for
BS05654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 251..1873 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:14 Download gff for
BS05654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 248..1870 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:22 Download gff for
BS05654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 251..1873 | 17..1639 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:22 Download gff for
BS05654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7728269..7728378 | 508..617 | 100 | <- | Minus |
2R | 7727942..7728196 | 618..872 | 100 | <- | Minus |
2R | 7728825..7728957 | 375..507 | 100 | <- | Minus |
2R | 7729016..7729158 | 232..374 | 100 | <- | Minus |
2R | 7729430..7729581 | 80..231 | 100 | <- | Minus |
2R | 7729642..7729704 | 17..79 | 100 | | Minus |
2R | 7719262..7719306 | 1595..1639 | 100 | <- | Minus |
2R | 7719843..7719996 | 1102..1255 | 100 | <- | Minus |
2R | 7719376..7719574 | 1396..1594 | 100 | <- | Minus |
2R | 7719641..7719780 | 1256..1395 | 100 | <- | Minus |
2R | 7725689..7725789 | 1001..1101 | 100 | <- | Minus |
2R | 7725868..7725995 | 873..1000 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:56 Download gff for
BS05654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3613373..3613500 | 873..1000 | 100 | <- | Minus |
arm_2R | 3616521..3616663 | 232..374 | 100 | <- | Minus |
arm_2R | 3615447..3615701 | 618..872 | 100 | <- | Minus |
arm_2R | 3615774..3615883 | 508..617 | 100 | <- | Minus |
arm_2R | 3616330..3616462 | 375..507 | 100 | <- | Minus |
arm_2R | 3606767..3606811 | 1595..1639 | 100 | <- | Minus |
arm_2R | 3606881..3607079 | 1396..1594 | 100 | <- | Minus |
arm_2R | 3607146..3607285 | 1256..1395 | 100 | <- | Minus |
arm_2R | 3607348..3607501 | 1102..1255 | 100 | <- | Minus |
arm_2R | 3613194..3613294 | 1001..1101 | 100 | <- | Minus |
arm_2R | 3616935..3617086 | 80..231 | 100 | <- | Minus |
arm_2R | 3617147..3617209 | 17..79 | 100 | | Minus |
BS05654.pep Sequence
Translation from 16 to 1638
> BS05654.pep
MRLDTNSNVDFKAFESSSSSCPVKLDNLATWGGSQKTDTRLPITDYSNLG
GPRHNRSPFPLCKDVNNRFVIWDGDMTTLEVDAITNTSDETLTESNSISE
RIFAVAGNQLREELSTTVKECRTGDVRITRGYNLPAKYVLHTVAPAYREK
FKTAAENTLHCCYRNVLCKAKELNLHTIALCNISAHQKSFPADVAAHIAL
RTIRRYLDKCTLQVVILCVGSSERGTYEVLAPLYFPRDQLEERSALWQLP
KDIGGEFGEPQHPDPDRQIRIIRNPQHSVHMRHHLADDDSDVSPHDMEGN
SSDLEYGARDMNGLSLNSYSSGLQAQLQRDLDRQHLLSDRPRTGVYENVI
SEGVEGIEHQERYERLLRRAQVEDLTEVSGIGCLYQSGVDRLGRPVIVFC
GKWFPAQNIDLEKALLYLIKLLDPIVKGDYVISYFHTLTSTNNYPSLHWL
REVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFMAPAIKAKVHSLP
GVEHLYSAITKDQLEIPAYITEYDMATNGLHYFNPVPTAS*
BS05654.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-PC | 540 | CG18812-PC | 1..540 | 1..540 | 2874 | 100 | Plus |
CG18812-PF | 534 | CG18812-PF | 1..534 | 1..540 | 2826 | 98.9 | Plus |
CG18812-PD | 264 | CG18812-PD | 10..264 | 286..540 | 1356 | 99.6 | Plus |
CG18812-PB | 244 | CG18812-PB | 1..244 | 297..540 | 1298 | 100 | Plus |
CG18812-PA | 217 | CG18812-PA | 37..217 | 360..540 | 973 | 99.4 | Plus |