Clone BS05655 Report

Search the DGRC for BS05655

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG15012-RC
Protein status:BS05655.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05655.5prime Sequence

489 bp (488 high quality bases) assembled on 2005-12-02

> BS05655.5prime
GAAGTTATCAGTCGACATGGGCGTGTTGGACAATATTGCGTTGCATTTCA
CGGGGGATGCGTCCAGGAACAGGAACACCTCCATAATAGCCGGACTTCTG
TTTTTCGCAGGATGGTGGGTTCTAATCGATGCCATGTCCATCGACGGCAA
GCACCAGATTACCACAGGACACGTCTTCATCGGCATCTTCGGGACCATCA
GCTTCTGCATGGTGAACGCAGTGAAGGGAGAACATATTTCTGATGAGAAC
TCATCGGAGTCCGGCGCCAGGATAGCGAAGATCTGGCTGCTTGTGGGCTT
CCTAATGGGTTTTGCCTCCATCATTGCCGCCATCTGGGTGATGATCGACG
ACTTCATCAACAATGAAAAGAAGGATGGCTGGTTTGGCGTGGCTCTGCTG
ATGCAAAACGTCTTCATCCTGTTCGCCAGTTTGGTCTACAAGTTTGGACG
CAACGAGGAAGAGTGGAATGAGTAAAAGCTTTCTAGACC

BS05655.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-PB 459 CG15012-RB 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-RC 858 CG15012-RC 94..553 17..476 2300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4291875..4292010 235..100 680 100 Minus
3L 28110227 3L 4291687..4291816 365..236 650 100 Minus
3L 28110227 3L 4291513..4291624 476..365 560 100 Minus
3L 28110227 3L 4292070..4292153 100..17 420 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:17:44 has no hits.

BS05655.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:02 Download gff for BS05655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-PB 1..459 17..475 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:04 Download gff for BS05655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-PB 1..459 17..475 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:37 Download gff for BS05655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 94..557 17..481 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:38 Download gff for BS05655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 94..557 17..481 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:38 Download gff for BS05655.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4291509..4291623 366..481 99 <- Minus
3L 4291687..4291816 236..365 100 <- Minus
3L 4291875..4292009 101..235 100 <- Minus
3L 4292070..4292153 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:37 Download gff for BS05655.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4291509..4291623 366..481 99 <- Minus
arm_3L 4291687..4291816 236..365 100 <- Minus
arm_3L 4291875..4292009 101..235 100 <- Minus
arm_3L 4292070..4292153 17..100 100   Minus

BS05655.3prime Sequence

489 bp (488 high quality bases) assembled on 2005-12-02

> BS05655.3prime
ATGGTCTAGAAAGCTTTTACTCATTCCACTCTTCCTCGTTGCGTCCAAAC
TTGTAGACCAAACTGGCGAACAGGATGAAGACGTTTTGCATCAGCAGAGC
CACGCCAAACCAGCCATCCTTCTTTTCATTGTTGATGAAGTCGTCGATCA
TCACCCAGATGGCGGCAATGATGGAGGCAAAACCCATTAGGAAGCCCACA
AGCAGCCAGATCTTCGCTATCCTGGCGCCGGACTCCGATGAGTTCTCATC
AGAAATATGTTCTCCCTTCACTGCGTTCACCATGCAGAAGCTGATGGTCC
CGAAGATGCCGATGAAGACGTGTCCTGTGGTAATCTGGTGCTTGCCGTCG
ATGGACATGGCATCGATTAGAACCCACCATCCTGCGAAAAACAGAAGTCC
GGCTATTATGGAGGTGTTCCTGTTCCTGGACGCATCCCCCGTGAAATGCA
ACGCAATATTGTCCAACACGCCCATGTCGACTGATAACT

BS05655.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-PB 459 CG15012-RB 1..459 475..17 2295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-RC 858 CG15012-RC 94..553 475..16 2300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4291875..4292010 257..392 680 100 Plus
3L 28110227 3L 4291687..4291816 127..256 650 100 Plus
3L 28110227 3L 4291513..4291624 16..127 560 100 Plus
3L 28110227 3L 4292070..4292153 392..475 420 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:25:59 has no hits.

BS05655.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:01 Download gff for BS05655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-PB 1..459 17..475 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:02 Download gff for BS05655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-PB 1..459 17..475 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:52:31 Download gff for BS05655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 94..557 11..475 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:41:41 Download gff for BS05655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 94..557 11..475 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:41:41 Download gff for BS05655.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4291509..4291623 11..126 99 <- Plus
3L 4291687..4291816 127..256 100 <- Plus
3L 4291875..4292009 257..391 100 <- Plus
3L 4292070..4292153 392..475 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:52:31 Download gff for BS05655.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4291509..4291623 11..126 99 <- Plus
arm_3L 4291687..4291816 127..256 100 <- Plus
arm_3L 4291875..4292009 257..391 100 <- Plus
arm_3L 4292070..4292153 392..475 100   Plus

BS05655.complete Sequence

491 bp (491 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635197

> BS05655.complete
GAAGTTATCAGTCGACATGGGCGTGTTGGACAATATTGCGTTGCATTTCA
CGGGGGATGCGTCCAGGAACAGGAACACCTCCATAATAGCCGGACTTCTG
TTTTTCGCAGGATGGTGGGTTCTAATCGATGCCATGTCCATCGACGGCAA
GCACCAGATTACCACAGGACACGTCTTCATCGGCATCTTCGGGACCATCA
GCTTCTGCATGGTGAACGCAGTGAAGGGAGAACATATTTCTGATGAGAAC
TCATCGGAGTCCGGCGCCAGGATAGCGAAGATCTGGCTGCTTGTGGGCTT
CCTAATGGGTTTTGCCTCCATCATTGCCGCCATCTGGGTGATGATCGACG
ACTTCATCAACAATGAAAAGAAGGATGGCTGGTTTGGCGTGGCTCTGCTG
ATGCAAAACGTCTTCATCCTGTTCGCCAGTTTGGTCTACAAGTTTGGACG
CAACGAGGAAGAGTGGAATGAGTAAAAGCTTTCTAGACCAT

BS05655.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-RC 459 CG15012-PC 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-RC 858 CG15012-RC 94..553 17..476 2300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4291875..4292010 235..100 680 100 Minus
3L 28110227 3L 4291687..4291816 365..236 650 100 Minus
3L 28110227 3L 4291513..4291624 476..365 560 100 Minus
3L 28110227 3L 4292070..4292153 100..17 420 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:41:36 has no hits.

BS05655.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:49 Download gff for BS05655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RB 1..459 17..475 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:35 Download gff for BS05655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RB 237..700 17..481 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:15 Download gff for BS05655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 94..550 17..473 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:49 Download gff for BS05655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RB 237..700 17..481 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:23 Download gff for BS05655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 94..550 17..473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:23 Download gff for BS05655.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4291516..4291623 366..473 100 <- Minus
3L 4291687..4291816 236..365 100 <- Minus
3L 4291875..4292009 101..235 100 <- Minus
3L 4292070..4292153 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:15 Download gff for BS05655.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4291516..4291623 366..473 100 <- Minus
arm_3L 4291687..4291816 236..365 100 <- Minus
arm_3L 4291875..4292009 101..235 100 <- Minus
arm_3L 4292070..4292153 17..100 100   Minus

BS05655.pep Sequence

Translation from 16 to 474

> BS05655.pep
MGVLDNIALHFTGDASRNRNTSIIAGLLFFAGWWVLIDAMSIDGKHQITT
GHVFIGIFGTISFCMVNAVKGEHISDENSSESGARIAKIWLLVGFLMGFA
SIIAAIWVMIDDFINNEKKDGWFGVALLMQNVFILFASLVYKFGRNEEEW
NE*

BS05655.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-PC 152 CG15012-PC 1..152 1..152 797 100 Plus