Clone Sequence Records
BS05655.5prime Sequence
489 bp (488 high quality bases) assembled on 2005-12-02
> BS05655.5prime
GAAGTTATCAGTCGACATGGGCGTGTTGGACAATATTGCGTTGCATTTCA
CGGGGGATGCGTCCAGGAACAGGAACACCTCCATAATAGCCGGACTTCTG
TTTTTCGCAGGATGGTGGGTTCTAATCGATGCCATGTCCATCGACGGCAA
GCACCAGATTACCACAGGACACGTCTTCATCGGCATCTTCGGGACCATCA
GCTTCTGCATGGTGAACGCAGTGAAGGGAGAACATATTTCTGATGAGAAC
TCATCGGAGTCCGGCGCCAGGATAGCGAAGATCTGGCTGCTTGTGGGCTT
CCTAATGGGTTTTGCCTCCATCATTGCCGCCATCTGGGTGATGATCGACG
ACTTCATCAACAATGAAAAGAAGGATGGCTGGTTTGGCGTGGCTCTGCTG
ATGCAAAACGTCTTCATCCTGTTCGCCAGTTTGGTCTACAAGTTTGGACG
CAACGAGGAAGAGTGGAATGAGTAAAAGCTTTCTAGACC
BS05655.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15012-PB | 459 | CG15012-RB | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15012-RC | 858 | CG15012-RC | 94..553 | 17..476 | 2300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4291875..4292010 | 235..100 | 680 | 100 | Minus |
3L | 28110227 | 3L | 4291687..4291816 | 365..236 | 650 | 100 | Minus |
3L | 28110227 | 3L | 4291513..4291624 | 476..365 | 560 | 100 | Minus |
3L | 28110227 | 3L | 4292070..4292153 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:17:44 has no hits.
BS05655.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:02 Download gff for
BS05655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-PB | 1..459 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:04 Download gff for
BS05655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-PB | 1..459 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:37 Download gff for
BS05655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RC | 94..557 | 17..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:38 Download gff for
BS05655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RC | 94..557 | 17..481 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:38 Download gff for
BS05655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4291509..4291623 | 366..481 | 99 | <- | Minus |
3L | 4291687..4291816 | 236..365 | 100 | <- | Minus |
3L | 4291875..4292009 | 101..235 | 100 | <- | Minus |
3L | 4292070..4292153 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:37 Download gff for
BS05655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4291509..4291623 | 366..481 | 99 | <- | Minus |
arm_3L | 4291687..4291816 | 236..365 | 100 | <- | Minus |
arm_3L | 4291875..4292009 | 101..235 | 100 | <- | Minus |
arm_3L | 4292070..4292153 | 17..100 | 100 | | Minus |
BS05655.3prime Sequence
489 bp (488 high quality bases) assembled on 2005-12-02
> BS05655.3prime
ATGGTCTAGAAAGCTTTTACTCATTCCACTCTTCCTCGTTGCGTCCAAAC
TTGTAGACCAAACTGGCGAACAGGATGAAGACGTTTTGCATCAGCAGAGC
CACGCCAAACCAGCCATCCTTCTTTTCATTGTTGATGAAGTCGTCGATCA
TCACCCAGATGGCGGCAATGATGGAGGCAAAACCCATTAGGAAGCCCACA
AGCAGCCAGATCTTCGCTATCCTGGCGCCGGACTCCGATGAGTTCTCATC
AGAAATATGTTCTCCCTTCACTGCGTTCACCATGCAGAAGCTGATGGTCC
CGAAGATGCCGATGAAGACGTGTCCTGTGGTAATCTGGTGCTTGCCGTCG
ATGGACATGGCATCGATTAGAACCCACCATCCTGCGAAAAACAGAAGTCC
GGCTATTATGGAGGTGTTCCTGTTCCTGGACGCATCCCCCGTGAAATGCA
ACGCAATATTGTCCAACACGCCCATGTCGACTGATAACT
BS05655.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15012-PB | 459 | CG15012-RB | 1..459 | 475..17 | 2295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15012-RC | 858 | CG15012-RC | 94..553 | 475..16 | 2300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4291875..4292010 | 257..392 | 680 | 100 | Plus |
3L | 28110227 | 3L | 4291687..4291816 | 127..256 | 650 | 100 | Plus |
3L | 28110227 | 3L | 4291513..4291624 | 16..127 | 560 | 100 | Plus |
3L | 28110227 | 3L | 4292070..4292153 | 392..475 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:25:59 has no hits.
BS05655.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:01 Download gff for
BS05655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-PB | 1..459 | 17..475 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:02 Download gff for
BS05655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-PB | 1..459 | 17..475 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:52:31 Download gff for
BS05655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RC | 94..557 | 11..475 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:41:41 Download gff for
BS05655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RC | 94..557 | 11..475 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:41:41 Download gff for
BS05655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4291509..4291623 | 11..126 | 99 | <- | Plus |
3L | 4291687..4291816 | 127..256 | 100 | <- | Plus |
3L | 4291875..4292009 | 257..391 | 100 | <- | Plus |
3L | 4292070..4292153 | 392..475 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:52:31 Download gff for
BS05655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4291509..4291623 | 11..126 | 99 | <- | Plus |
arm_3L | 4291687..4291816 | 127..256 | 100 | <- | Plus |
arm_3L | 4291875..4292009 | 257..391 | 100 | <- | Plus |
arm_3L | 4292070..4292153 | 392..475 | 100 | | Plus |
BS05655.complete Sequence
491 bp (491 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635197
> BS05655.complete
GAAGTTATCAGTCGACATGGGCGTGTTGGACAATATTGCGTTGCATTTCA
CGGGGGATGCGTCCAGGAACAGGAACACCTCCATAATAGCCGGACTTCTG
TTTTTCGCAGGATGGTGGGTTCTAATCGATGCCATGTCCATCGACGGCAA
GCACCAGATTACCACAGGACACGTCTTCATCGGCATCTTCGGGACCATCA
GCTTCTGCATGGTGAACGCAGTGAAGGGAGAACATATTTCTGATGAGAAC
TCATCGGAGTCCGGCGCCAGGATAGCGAAGATCTGGCTGCTTGTGGGCTT
CCTAATGGGTTTTGCCTCCATCATTGCCGCCATCTGGGTGATGATCGACG
ACTTCATCAACAATGAAAAGAAGGATGGCTGGTTTGGCGTGGCTCTGCTG
ATGCAAAACGTCTTCATCCTGTTCGCCAGTTTGGTCTACAAGTTTGGACG
CAACGAGGAAGAGTGGAATGAGTAAAAGCTTTCTAGACCAT
BS05655.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15012-RC | 459 | CG15012-PC | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15012-RC | 858 | CG15012-RC | 94..553 | 17..476 | 2300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4291875..4292010 | 235..100 | 680 | 100 | Minus |
3L | 28110227 | 3L | 4291687..4291816 | 365..236 | 650 | 100 | Minus |
3L | 28110227 | 3L | 4291513..4291624 | 476..365 | 560 | 100 | Minus |
3L | 28110227 | 3L | 4292070..4292153 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:41:36 has no hits.
BS05655.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:49 Download gff for
BS05655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RB | 1..459 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:35 Download gff for
BS05655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RB | 237..700 | 17..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:15 Download gff for
BS05655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RC | 94..550 | 17..473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:49 Download gff for
BS05655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RB | 237..700 | 17..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:23 Download gff for
BS05655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RC | 94..550 | 17..473 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:23 Download gff for
BS05655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4291516..4291623 | 366..473 | 100 | <- | Minus |
3L | 4291687..4291816 | 236..365 | 100 | <- | Minus |
3L | 4291875..4292009 | 101..235 | 100 | <- | Minus |
3L | 4292070..4292153 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:15 Download gff for
BS05655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4291516..4291623 | 366..473 | 100 | <- | Minus |
arm_3L | 4291687..4291816 | 236..365 | 100 | <- | Minus |
arm_3L | 4291875..4292009 | 101..235 | 100 | <- | Minus |
arm_3L | 4292070..4292153 | 17..100 | 100 | | Minus |
BS05655.pep Sequence
Translation from 16 to 474
> BS05655.pep
MGVLDNIALHFTGDASRNRNTSIIAGLLFFAGWWVLIDAMSIDGKHQITT
GHVFIGIFGTISFCMVNAVKGEHISDENSSESGARIAKIWLLVGFLMGFA
SIIAAIWVMIDDFINNEKKDGWFGVALLMQNVFILFASLVYKFGRNEEEW
NE*
BS05655.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15012-PC | 152 | CG15012-PC | 1..152 | 1..152 | 797 | 100 | Plus |