Clone Sequence Records
BS05656.3prime Sequence
888 bp (822 high quality bases) assembled on 2005-12-02
> BS05656.3prime
ATGGTCTAGAAAGCTTCTAAACGCTCGACCTCGACGCGCCCACGATGTAG
CCCTTGGCGGTGAGAACGCCCCGGCAGCGGACATGCACCTGGTAACGCAG
TGTCCAGTCGATTGTGTAGCCAGGGACCAGTCCGTCGAACTGCTCCACGG
GCAGCAGGAGCTCGGGATCGCTGTGCGTGTTCAGTTGGATGTCGTGAGCG
GTGCAGAACTCCTGCAGTTCTGGTGGCACCACGCAGCACGTAGACAGGTT
GACCTGGGCAATTGTGGGCACAACCTGTGCGCTGTTGTGTAGCTCCTCCA
GCGCCGCCGCATCCAGATCGGCAATTCCCAGCTGTGTAATCTGCTGCTTG
AGGGCATATTGCTCCAGTGTTTTGTACAGTTCCTTCAGCTCTGCCACTCC
TTCCTTTCCATTGCGCTGGCTCCAGTTTGTAGCCCTGCTGACGTTGGAAT
CCTCGGAACAGGGCGGTTTGGTTGTGGCCACCGGCGTTGCGGTGGCAACC
GCATTCGGGTGGTAGGCCAACACCACATTGTCCACGTGCGTCACACTAAG
TATGTGGAGCAGCTCCTCCACCGCCTGATTCACAGACTCTGTGGAGTGGC
GATTGAGGAATATCTTGGCACCGATACTTATCTCATTCCGTCCATTCTCC
GTCAAGCGGGTGGTCAACTCCTGGGTGGCCCTTTGCACCCGCCCATGCAG
CTCGTCGATCTCCTTTTCAACCACCACGCGCTCCGCAGTCGAGTCGGTGT
GGAGCGTTATCTTCAGGCCGTCGTACAGCTCCTCGTTCGATTTGCGCTGT
CCCAGTTCCGTGGCGATGATGTTGCCCGTGCTAATCACCACGTTCTGGTA
CTTCTTCGTTATGGTCGGTATCATGTCGACTGATAACT
BS05656.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4919-PA | 858 | Gclm-RA | 1..858 | 874..17 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gclm-RB | 1505 | CG4919-RB | 160..1018 | 875..17 | 4295 | 100 | Minus |
| Gclm-RA | 1211 | CG4919-RA | 160..1018 | 875..17 | 4295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22685493..22686351 | 17..875 | 4295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:03:40 has no hits.
BS05656.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:03 Download gff for
BS05656.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-PA | 1..858 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:05 Download gff for
BS05656.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4919-PA | 1..858 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:59:57 Download gff for
BS05656.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 155..1021 | 10..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:00 Download gff for
BS05656.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 155..1021 | 10..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:00 Download gff for
BS05656.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22685489..22686356 | 10..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:59:57 Download gff for
BS05656.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18511211..18512078 | 10..880 | 99 | | Plus |
BS05656.5prime Sequence
871 bp (795 high quality bases) assembled on 2005-12-02
> BS05656.5prime
GAAGTTATCAGTCGACATGATACCGACCATAACGAAGAAGTACCAGAACG
TGGTGATTAGCACGGGCAACATCATCGCCACGGAACTGGGACAGCGCAAA
TCGAACGAGGAGCTGTACGACGGCCTGAAGATAACGCTCCACACCGACTC
GACTGCGGAGCGCGTGGTGGTTGAAAAGGAGATCGACGAGCTGCATGGGC
GGGTGCAAAGGGCCACCCAGGAGTTGACCACCCGCTTGACGGAGAATGGA
CGGAATGAGATAAGTATCGGTGCCAAGATATTCCTCAATCGCCACTCCAC
AGAGTCTGTGAATCAGGCGGTGGAGGAGCTGCTCCACATACTTAGTGTGA
CGCACGTGGACAATGTGGTGTTGGCCTACCACCCGAATGCGGTTGCCACC
GCAACGCCGGTGGCCACAACCAAACCGCCCTGTTCCGAGGATTCCAACGT
CAGCAGGGCTACAAACTGGAGCCAGCGCAATGGAAAGGAAGGAGTGGCAG
AGCTGAAGGAACTGTACAAAACACTGGAGCAATATGCCCTCAAGCAGCAG
ATTACACAGCTGGGAATTGCCGATCTGGATGCGGCGGCGCTGGAGGAGCT
ACACAACAGCGCACAGGTTGTGCCCACAATTGCCCAGGTCAACCTGTCTA
CGTGCTGCGTGGTGCCACCAGAACTGCAGGAGTTCTGCACCGCTCACGAC
ATCCAACTGAACACGCACAGCGATCCCGAGCTCCTGCTGCCCGTGGAGCA
GTTCGACGGACTGGTCCCTGGCTACACAATCGACTGGACACTGCGTTACC
AGGTGCATGTCCGCTGCCGGGGCGTTCTCACCGCCAAGGGCTACATCGTG
GGCGCGTCGAGGTCGAGCGTT
BS05656.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4919-PA | 858 | Gclm-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gclm-RB | 1505 | CG4919-RB | 160..1015 | 16..871 | 4280 | 100 | Plus |
| Gclm-RA | 1211 | CG4919-RA | 160..1015 | 16..871 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22685496..22686351 | 871..16 | 4280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:39:38 has no hits.
BS05656.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:05 Download gff for
BS05656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:06 Download gff for
BS05656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4919-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:16:55 Download gff for
BS05656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 155..1015 | 11..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:09 Download gff for
BS05656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 155..1015 | 11..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:09 Download gff for
BS05656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22685496..22686356 | 11..871 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:16:55 Download gff for
BS05656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18511218..18512078 | 11..871 | 99 | | Minus |
BS05656.complete Sequence
890 bp (890 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635198
> BS05656.complete
GAAGTTATCAGTCGACATGATACCGACCATAACGAAGAAGTACCAGAACG
TGGTGATTAGCACGGGCAACATCATCGCCACGGAACTGGGACAGCGCAAA
TCGAACGAGGAGCTGTACGACGGCCTGAAGATAACGCTCCACACCGACTC
GACTGCGGAGCGCGTGGTGGTTGAAAAGGAGATCGACGAGCTGCATGGGC
GGGTGCAAAGGGCCACCCAGGAGTTGACCACCCGCTTGACGGAGAATGGA
CGGAATGAGATAAGTATCGGTGCCAAGATATTCCTCAATCGCCACTCCAC
AGAGTCTGTGAATCAGGCGGTGGAGGAGCTGCTCCACATACTTAGTGTGA
CGCACGTGGACAATGTGGTGTTGGCCTACCACCCGAATGCGGTTGCCACC
GCAACGCCGGTGGCCACAACCAAACCGCCCTGTTCCGAGGATTCCAACGT
CAGCAGGGCTACAAACTGGAGCCAGCGCAATGGAAAGGAAGGAGTGGCAG
AGCTGAAGGAACTGTACAAAACACTGGAGCAATATGCCCTCAAGCAGCAG
ATTACACAGCTGGGAATTGCCGATCTGGATGCGGCGGCGCTGGAGGAGCT
ACACAACAGCGCACAGGTTGTGCCCACAATTGCCCAGGTCAACCTGTCTA
CGTGCTGCGTGGTGCCACCAGAACTGCAGGAGTTCTGCACCGCTCACGAC
ATCCAACTGAACACGCACAGCGATCCCGAGCTCCTGCTGCCCGTGGAGCA
GTTCGACGGACTGGTCCCTGGCTACACAATCGACTGGACACTGCGTTACC
AGGTGCATGTCCGCTGCCGGGGCGTTCTCACCGCCAAGGGCTACATCGTG
GGCGCGTCGAGGTCGAGCGTTTAGAAGCTTTCTAGACCAT
BS05656.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gclm-RB | 858 | CG4919-PB | 1..858 | 17..874 | 4290 | 100 | Plus |
| Gclm-RA | 858 | CG4919-PA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gclm-RB | 1505 | CG4919-RB | 160..1018 | 16..874 | 4295 | 100 | Plus |
| Gclm-RA | 1211 | CG4919-RA | 160..1018 | 16..874 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22685493..22686351 | 874..16 | 4295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:34:48 has no hits.
BS05656.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:50 Download gff for
BS05656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:36 Download gff for
BS05656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 172..1038 | 11..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:04:32 Download gff for
BS05656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 161..1018 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:50 Download gff for
BS05656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 172..1038 | 11..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:39 Download gff for
BS05656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 161..1018 | 17..874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:39 Download gff for
BS05656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22685493..22686350 | 17..874 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:04:32 Download gff for
BS05656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18511215..18512072 | 17..874 | 100 | | Minus |
BS05656.pep Sequence
Translation from 16 to 873
> BS05656.pep
MIPTITKKYQNVVISTGNIIATELGQRKSNEELYDGLKITLHTDSTAERV
VVEKEIDELHGRVQRATQELTTRLTENGRNEISIGAKIFLNRHSTESVNQ
AVEELLHILSVTHVDNVVLAYHPNAVATATPVATTKPPCSEDSNVSRATN
WSQRNGKEGVAELKELYKTLEQYALKQQITQLGIADLDAAALEELHNSAQ
VVPTIAQVNLSTCCVVPPELQEFCTAHDIQLNTHSDPELLLPVEQFDGLV
PGYTIDWTLRYQVHVRCRGVLTAKGYIVGASRSSV*
BS05656.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gclm-PB | 285 | CG4919-PB | 1..285 | 1..285 | 1455 | 100 | Plus |
| Gclm-PA | 285 | CG4919-PA | 1..285 | 1..285 | 1455 | 100 | Plus |
