Clone BS05658 Report

Search the DGRC for BS05658

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCpr72Ec-RA
Protein status:BS05658.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05658.3prime Sequence

885 bp (795 high quality bases) assembled on 2005-12-02

> BS05658.3prime
ATGGTCTAGAAAGCTTTTAATTGCGTTTGCTTACCAACAAACTGCGACTA
AGGGCCACTGGGCGCAGGGTTCGCAGTTCCGTGGGCGTGGTAACACTGTA
CTTGGTGTTGGGAGAAACCAGGGTGTAGTAGGCACCTATTGGCACACGGA
GATCACTGTTGTCCAAACGATCCTCGAGCAGTTTCTCGGCACTGGCCAAG
TCGCCGAGTTTCAGGTAACTGCTGGAGCTTAGATCAGCCAAGGAGTAGAC
GGTGCGCAGGCGCAGATCATCGCCATCGCGATCAGATGAGATCTGACGAG
CATTCTCCCGGATTTGACTCGAGTCTCGCAAAGATTCTTGGTTTCGGGAC
TGATCTTGGCGCAGGTCCTGGCGCAGTTCTTGACGCAGATCTTGGCGCAG
ATCTTGACGCAGGTCTTGGAGCAGATCTTGACGGGATTCTTGGTCAATTC
TTAGGTCCTGACGGCGATCTTCTCGACGATCTTCACGACGATCCTCTCGC
CTCTCTTCTCGCTGATCCTCTCCCCTCTCTTCTCGCTGATCCTCTCGCCT
CTCTTCTCGCTGATCTTGTCGTCGATCTTCTCGCTGATTTTGTCGTCGAT
CTTCTCGCTGATCTTGTCGTCGATCTTCTCGCTGATCCTGCCTCTGCTCC
TGTCTCAGATCTTGTCTCAGTTCCTTCCTCTGATCCTGTCGGATTTCCTG
CTTCTCTCGCTGCTCCCGGTCATCCCTGTTCCTAGGCAGATTAAGCTCTC
GCTGACGATCGGCCAACATGGCTGATAGCTCGGCTCGTACTCTCTCCCAG
ATCGCCGCATCCTCATCGGTCAGACTCTGCTCCCCCGACTGCTGATCCTC
AATTGTGTTTCTGATCTGCTCCTGCTGCCTTCTGT

BS05658.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4784-PA 1290 CG4784-RA 456..1290 851..17 4150 99.8 Minus
CG4784-PA 1290 CG4784-RA 422..451 885..856 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr72Ec-RA 1447 CG4784-RA 454..1322 885..17 4285 99.7 Minus
Cpr72Ec-RA 1447 CG4784-RA 751..859 636..528 320 86.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16366019..16366887 17..885 4285 99.5 Plus
3L 28110227 3L 16366463..16366615 485..637 510 88.9 Plus
3L 28110227 3L 16366487..16366639 461..613 510 88.9 Plus
3L 28110227 3L 16366482..16366590 528..636 320 86.2 Plus
3L 28110227 3L 16366356..16366411 378..433 190 89.3 Plus
3L 28110227 3L 16366380..16366435 354..409 190 89.3 Plus
Blast to na_te.dros performed on 2015-02-12 17:53:22 has no hits.

BS05658.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:08 Download gff for BS05658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4784-PA 422..1290 17..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:11 Download gff for BS05658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4784-PA 422..1290 17..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:00 Download gff for BS05658.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr72Ec-RA 454..1326 13..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:59 Download gff for BS05658.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr72Ec-RA 454..1326 13..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:59 Download gff for BS05658.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16366015..16366887 13..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:00 Download gff for BS05658.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16359115..16359987 13..885 99   Plus

BS05658.5prime Sequence

849 bp (752 high quality bases) assembled on 2005-12-02

> BS05658.5prime
GAAGTTATCAGTCGACATGCACTGCTTCACCTGGACGATTCTGGGCGGCC
TGTTGGCCCTTACCTCAGCTGCAGGATTGCCCCAAAGGCCGAGCAGTGGT
TACCAGGAGCAAGATACGGCCAGAGCCTTCTACTCTTATGGCTACCGGGA
TGAGAATGCGGCCAGGGCTGAGTACTCCTCCAGAGATGGCACGTCCCGAG
GATTCTACTCTTATGTGGATGCCGATGGAAAACTACAAACGGTTCGCTAT
GAGGCCAATGGCGTTCAGGGTTTCAAGGCCGAGGCGAGTAACCAGCCCCA
AGCACCCGTGGACAAGGGAAAGGCTCCATTGCCGGTAACCGATACGGAGG
AGGTGCAGCAGGCTCGTCTAAATCACCTGAATGCTTTGAGGGAAGCCAGG
GAGAAAGCTTTAGCCACCAGTTTGCGTGAGGAGGCGGACAGAAGGCAGCA
GGAGCAGATCAGAAACAACAATGAGGATCAGCAGTCGGGGGAGCAGAGTC
TGACCGATGAGGATGCGGCGATCTTGGAGAGAGTACGAGCCGAGCTATCA
GCCATGTTGGCCGATCGTCAGCGAGAGCTTAATCTGCCTAGGAACAGGGA
TGACCGGGAGCAGCGAGAGAAGCAGGAAATCCGACAGGATCAGAGGAAGG
AACTGAGACAAGATCTGAGACAGGAGCAGAGGCAGGATCAGCGAGAAGAT
CGACGACAAGATCAGCGAGAAGATCGACGACAAAATCAGCGAGAAGATCG
ACGACAAGATCAGCGAGAAGAGAGGCGAGAGGATCAGCGAGAAGAGAGGG
GAGAGGATCAGCGAGAAGAGAGGCGAGAGGATCGTCGTGAAGATCGTCG

BS05658.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4784-PA 1290 CG4784-RA 1..833 17..849 4165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr72Ec-RA 1447 CG4784-RA 33..865 17..849 4165 100 Plus
Cpr72Ec-RA 1447 CG4784-RA 751..859 687..795 320 86.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16366476..16367308 849..17 4165 100 Minus
3L 28110227 3L 16366463..16366615 838..686 510 88.9 Minus
3L 28110227 3L 16366506..16366639 843..710 490 91 Minus
3L 28110227 3L 16366482..16366590 795..687 320 86.2 Minus
Blast to na_te.dros performed on 2015-02-12 10:55:13 has no hits.

BS05658.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:09 Download gff for BS05658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4784-PA 1..833 17..849 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:13 Download gff for BS05658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4784-PA 1..833 17..849 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:00 Download gff for BS05658.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr72Ec-RA 25..865 10..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:32 Download gff for BS05658.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr72Ec-RA 25..865 10..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:32 Download gff for BS05658.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16366476..16367311 10..849 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:00 Download gff for BS05658.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16359576..16360411 10..849 99   Minus

BS05658.complete Sequence

1322 bp (1322 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635199

> BS05658.complete
GAAGTTATCAGTCGACATGCACTGCTTCACCTGGACGATTCTGGGCGGCC
TGTTGGCCCTTACCTCAGCTGCAGGATTGCCCCAAAGGCCGAGCAGTGGT
TACCAGGAGCAAGATACGGCCAGAGCCTTCTACTCTTATGGCTACCGGGA
TGAGAATGCGGCCAGGGCTGAGTACTCCTCCAGAGATGGCACGTCCCGAG
GATTCTACTCTTATGTGGATGCCGATGGAAAACTACAAACGGTTCGCTAT
GAGGCCAATGGCGTTCAGGGTTTCAAGGCCGAGGCGAGTAACCAGCCCCA
AGCACCCGTGGACAAGGGAAAGGCTCCATTGCCGGTAACCGATACGGAGG
AGGTGCAGCAGGCTCGTCTAAATCACCTGAATGCTTTGAGGGAAGCCAGG
GAGAAAGCTTTAGCCACCAGTTTGCGTGAGGAGGCGGACAGAAGGCAGCA
GGAGCAGATCAGAAACAACAATGAGGATCAGCAGTCGGGGGAGCAGAGTC
TGACCGATGAGGATGCGGCGATCTTGGAGAGAGTACGAGCCGAGCTATCA
GCCATGTTGGCCGATCGTCAGCGAGAGCTTAATCTGCCTAGGAACAGGGA
TGACCGGGAGCAGCGAGAGAAGCAGGAAATCCGACAGGATCAGAGGAAGG
AACTGAGACAAGATCTGAGACAGGAGCAGAGGCAGGATCAGCGAGAAGAT
CGACGACAAGATCAGCGAGAAGATCGACGACAAAATCAGCGAGAAGATCG
ACGACAAGATCAGCGAGAAGAGAGGCGAGAGGATCAGCGAGAAGAGAGGG
GAGAGGATCAGCGAGAAGAGAGGCGAGAGGATCGTCGTGAAGATCGTCGA
GAAGATCGCCGTCAGGACCTAAGAATTGACCAAGAATCCCGTCAAGATCT
GCTCCAAGACCTGCGTCAAGATCTGCGCCAAGATCTGCGTCAAGAACTGC
GCCAGGACCTGCGCCAAGATCAGTCCCGAAACCAAGAATCTTTGCGAGAC
TCGAGTCAAATCCGGGAGAATGCTCGTCAGATCTCATCTGATCGCGATGG
CGATGATCTGCGCCTGCGCACCGTCTACTCCTTGGCTGATCTAAGCTCCA
GCAGTTACCTGAAACTCGGCGACTTGGCCAGTGCCGAGAAACTGCTCGAG
GATCGTTTGGACAACAGTGATCTCCGTGTGCCAATAGGTGCCTACTACAC
CCTGGTTTCTCCCAACACCAAGTACAGTGTTACCACGCCCACGGAACTGC
GAACCCTGCGCCCAGTGGCCCTTAGTCGCAGTTTGTTGGTAAGCAAACGC
AATTAAAAGCTTTCTAGACCAT

BS05658.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr72Ec-RA 1290 CG4784-PA 1..1290 17..1306 6450 100 Plus
Cpr72Ec-RA 1290 CG4784-PA 694..846 686..838 510 88.9 Plus
Cpr72Ec-RA 1290 CG4784-PA 670..822 710..862 510 88.9 Plus
Cpr72Ec-RA 1290 CG4784-PA 719..827 687..795 320 86.2 Plus
Cpr72Ec-RA 1290 CG4784-PA 874..929 914..969 190 89.3 Plus
Cpr72Ec-RA 1290 CG4784-PA 898..953 890..945 190 89.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr72Ec-RA 1447 CG4784-RA 33..1322 17..1306 6450 100 Plus
Cpr72Ec-RA 1447 CG4784-RA 702..854 710..862 510 88.9 Plus
Cpr72Ec-RA 1447 CG4784-RA 726..878 686..838 510 88.9 Plus
Cpr72Ec-RA 1447 CG4784-RA 751..859 687..795 320 86.2 Plus
Cpr72Ec-RA 1447 CG4784-RA 906..961 914..969 190 89.3 Plus
Cpr72Ec-RA 1447 CG4784-RA 930..985 890..945 190 89.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16366019..16367308 1306..17 6450 100 Minus
3L 28110227 3L 16366463..16366615 838..686 510 88.9 Minus
3L 28110227 3L 16366487..16366639 862..710 510 88.9 Minus
3L 28110227 3L 16366482..16366590 795..687 320 86.2 Minus
3L 28110227 3L 16366356..16366411 945..890 190 89.3 Minus
3L 28110227 3L 16366380..16366435 969..914 190 89.3 Minus
Blast to na_te.dros performed on 2014-11-27 19:53:33 has no hits.

BS05658.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:52 Download gff for BS05658.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr72Ec-RA 1..1290 17..1306 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:38 Download gff for BS05658.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr72Ec-RA 11..1312 10..1310 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:21 Download gff for BS05658.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr72Ec-RA 33..1320 17..1304 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:52 Download gff for BS05658.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr72Ec-RA 11..1312 10..1310 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:15 Download gff for BS05658.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr72Ec-RA 33..1320 17..1304 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:15 Download gff for BS05658.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16366021..16367308 17..1304 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:21 Download gff for BS05658.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16359121..16360408 17..1304 100   Minus

BS05658.pep Sequence

Translation from 16 to 1305

> BS05658.pep
MHCFTWTILGGLLALTSAAGLPQRPSSGYQEQDTARAFYSYGYRDENAAR
AEYSSRDGTSRGFYSYVDADGKLQTVRYEANGVQGFKAEASNQPQAPVDK
GKAPLPVTDTEEVQQARLNHLNALREAREKALATSLREEADRRQQEQIRN
NNEDQQSGEQSLTDEDAAILERVRAELSAMLADRQRELNLPRNRDDREQR
EKQEIRQDQRKELRQDLRQEQRQDQREDRRQDQREDRRQNQREDRRQDQR
EERREDQREERGEDQREERREDRREDRREDRRQDLRIDQESRQDLLQDLR
QDLRQDLRQELRQDLRQDQSRNQESLRDSSQIRENARQISSDRDGDDLRL
RTVYSLADLSSSSYLKLGDLASAEKLLEDRLDNSDLRVPIGAYYTLVSPN
TKYSVTTPTELRTLRPVALSRSLLVSKRN*

BS05658.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr72Ec-PA 429 CG4784-PA 1..429 1..429 2160 100 Plus
CG2839-PA 826 CG2839-PA 348..581 125..351 249 25.5 Plus
CG2839-PA 826 CG2839-PA 464..679 125..347 249 27.4 Plus
CG2839-PA 826 CG2839-PA 253..463 139..349 242 22.7 Plus
CG2839-PA 826 CG2839-PA 263..534 87..343 242 21.5 Plus
CG2839-PA 826 CG2839-PA 401..617 137..351 238 25.6 Plus
CG2839-PA 826 CG2839-PA 384..605 125..351 237 23.8 Plus
CG2839-PA 826 CG2839-PA 437..677 111..351 237 23.6 Plus
CG2839-PA 826 CG2839-PA 470..701 125..351 236 24.6 Plus
CG2839-PA 826 CG2839-PA 500..729 125..349 236 23.3 Plus
CG2839-PA 826 CG2839-PA 373..599 125..351 235 23.9 Plus
CG2839-PA 826 CG2839-PA 407..621 125..343 234 24 Plus
CG2839-PA 826 CG2839-PA 476..713 125..351 233 23.6 Plus
CG2839-PA 826 CG2839-PA 286..507 128..351 231 22.1 Plus
CG2839-PA 826 CG2839-PA 336..563 125..349 230 23.2 Plus
CG2839-PA 826 CG2839-PA 400..623 126..351 229 23.9 Plus
CG2839-PA 826 CG2839-PA 534..741 125..338 226 22.4 Plus
CG2839-PA 826 CG2839-PA 515..735 111..338 224 22.8 Plus
CG2839-PA 826 CG2839-PA 409..653 111..351 223 22.9 Plus
Cry-PB 477 CG16963-PB 69..328 30..307 221 27.7 Plus
Cry-PA 477 CG16963-PA 69..328 30..307 221 27.7 Plus
CG2839-PA 826 CG2839-PA 533..769 109..345 213 21.8 Plus
CG12239-PA 650 CG12239-PA 340..583 109..353 213 28.5 Plus
CG2839-PA 826 CG2839-PA 265..425 196..351 170 23 Plus