Clone Sequence Records
BS05658.3prime Sequence
885 bp (795 high quality bases) assembled on 2005-12-02
> BS05658.3prime
ATGGTCTAGAAAGCTTTTAATTGCGTTTGCTTACCAACAAACTGCGACTA
AGGGCCACTGGGCGCAGGGTTCGCAGTTCCGTGGGCGTGGTAACACTGTA
CTTGGTGTTGGGAGAAACCAGGGTGTAGTAGGCACCTATTGGCACACGGA
GATCACTGTTGTCCAAACGATCCTCGAGCAGTTTCTCGGCACTGGCCAAG
TCGCCGAGTTTCAGGTAACTGCTGGAGCTTAGATCAGCCAAGGAGTAGAC
GGTGCGCAGGCGCAGATCATCGCCATCGCGATCAGATGAGATCTGACGAG
CATTCTCCCGGATTTGACTCGAGTCTCGCAAAGATTCTTGGTTTCGGGAC
TGATCTTGGCGCAGGTCCTGGCGCAGTTCTTGACGCAGATCTTGGCGCAG
ATCTTGACGCAGGTCTTGGAGCAGATCTTGACGGGATTCTTGGTCAATTC
TTAGGTCCTGACGGCGATCTTCTCGACGATCTTCACGACGATCCTCTCGC
CTCTCTTCTCGCTGATCCTCTCCCCTCTCTTCTCGCTGATCCTCTCGCCT
CTCTTCTCGCTGATCTTGTCGTCGATCTTCTCGCTGATTTTGTCGTCGAT
CTTCTCGCTGATCTTGTCGTCGATCTTCTCGCTGATCCTGCCTCTGCTCC
TGTCTCAGATCTTGTCTCAGTTCCTTCCTCTGATCCTGTCGGATTTCCTG
CTTCTCTCGCTGCTCCCGGTCATCCCTGTTCCTAGGCAGATTAAGCTCTC
GCTGACGATCGGCCAACATGGCTGATAGCTCGGCTCGTACTCTCTCCCAG
ATCGCCGCATCCTCATCGGTCAGACTCTGCTCCCCCGACTGCTGATCCTC
AATTGTGTTTCTGATCTGCTCCTGCTGCCTTCTGT
BS05658.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4784-PA | 1290 | CG4784-RA | 456..1290 | 851..17 | 4150 | 99.8 | Minus |
CG4784-PA | 1290 | CG4784-RA | 422..451 | 885..856 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr72Ec-RA | 1447 | CG4784-RA | 454..1322 | 885..17 | 4285 | 99.7 | Minus |
Cpr72Ec-RA | 1447 | CG4784-RA | 751..859 | 636..528 | 320 | 86.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:53:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16366019..16366887 | 17..885 | 4285 | 99.5 | Plus |
3L | 28110227 | 3L | 16366463..16366615 | 485..637 | 510 | 88.9 | Plus |
3L | 28110227 | 3L | 16366487..16366639 | 461..613 | 510 | 88.9 | Plus |
3L | 28110227 | 3L | 16366482..16366590 | 528..636 | 320 | 86.2 | Plus |
3L | 28110227 | 3L | 16366356..16366411 | 378..433 | 190 | 89.3 | Plus |
3L | 28110227 | 3L | 16366380..16366435 | 354..409 | 190 | 89.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:53:22 has no hits.
BS05658.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:08 Download gff for
BS05658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4784-PA | 422..1290 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:11 Download gff for
BS05658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4784-PA | 422..1290 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:00 Download gff for
BS05658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr72Ec-RA | 454..1326 | 13..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:59 Download gff for
BS05658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr72Ec-RA | 454..1326 | 13..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:59 Download gff for
BS05658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16366015..16366887 | 13..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:00 Download gff for
BS05658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16359115..16359987 | 13..885 | 99 | | Plus |
BS05658.5prime Sequence
849 bp (752 high quality bases) assembled on 2005-12-02
> BS05658.5prime
GAAGTTATCAGTCGACATGCACTGCTTCACCTGGACGATTCTGGGCGGCC
TGTTGGCCCTTACCTCAGCTGCAGGATTGCCCCAAAGGCCGAGCAGTGGT
TACCAGGAGCAAGATACGGCCAGAGCCTTCTACTCTTATGGCTACCGGGA
TGAGAATGCGGCCAGGGCTGAGTACTCCTCCAGAGATGGCACGTCCCGAG
GATTCTACTCTTATGTGGATGCCGATGGAAAACTACAAACGGTTCGCTAT
GAGGCCAATGGCGTTCAGGGTTTCAAGGCCGAGGCGAGTAACCAGCCCCA
AGCACCCGTGGACAAGGGAAAGGCTCCATTGCCGGTAACCGATACGGAGG
AGGTGCAGCAGGCTCGTCTAAATCACCTGAATGCTTTGAGGGAAGCCAGG
GAGAAAGCTTTAGCCACCAGTTTGCGTGAGGAGGCGGACAGAAGGCAGCA
GGAGCAGATCAGAAACAACAATGAGGATCAGCAGTCGGGGGAGCAGAGTC
TGACCGATGAGGATGCGGCGATCTTGGAGAGAGTACGAGCCGAGCTATCA
GCCATGTTGGCCGATCGTCAGCGAGAGCTTAATCTGCCTAGGAACAGGGA
TGACCGGGAGCAGCGAGAGAAGCAGGAAATCCGACAGGATCAGAGGAAGG
AACTGAGACAAGATCTGAGACAGGAGCAGAGGCAGGATCAGCGAGAAGAT
CGACGACAAGATCAGCGAGAAGATCGACGACAAAATCAGCGAGAAGATCG
ACGACAAGATCAGCGAGAAGAGAGGCGAGAGGATCAGCGAGAAGAGAGGG
GAGAGGATCAGCGAGAAGAGAGGCGAGAGGATCGTCGTGAAGATCGTCG
BS05658.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4784-PA | 1290 | CG4784-RA | 1..833 | 17..849 | 4165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr72Ec-RA | 1447 | CG4784-RA | 33..865 | 17..849 | 4165 | 100 | Plus |
Cpr72Ec-RA | 1447 | CG4784-RA | 751..859 | 687..795 | 320 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16366476..16367308 | 849..17 | 4165 | 100 | Minus |
3L | 28110227 | 3L | 16366463..16366615 | 838..686 | 510 | 88.9 | Minus |
3L | 28110227 | 3L | 16366506..16366639 | 843..710 | 490 | 91 | Minus |
3L | 28110227 | 3L | 16366482..16366590 | 795..687 | 320 | 86.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:55:13 has no hits.
BS05658.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:09 Download gff for
BS05658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4784-PA | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:13 Download gff for
BS05658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4784-PA | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:00 Download gff for
BS05658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr72Ec-RA | 25..865 | 10..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:32 Download gff for
BS05658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr72Ec-RA | 25..865 | 10..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:32 Download gff for
BS05658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16366476..16367311 | 10..849 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:00 Download gff for
BS05658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16359576..16360411 | 10..849 | 99 | | Minus |
BS05658.complete Sequence
1322 bp (1322 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635199
> BS05658.complete
GAAGTTATCAGTCGACATGCACTGCTTCACCTGGACGATTCTGGGCGGCC
TGTTGGCCCTTACCTCAGCTGCAGGATTGCCCCAAAGGCCGAGCAGTGGT
TACCAGGAGCAAGATACGGCCAGAGCCTTCTACTCTTATGGCTACCGGGA
TGAGAATGCGGCCAGGGCTGAGTACTCCTCCAGAGATGGCACGTCCCGAG
GATTCTACTCTTATGTGGATGCCGATGGAAAACTACAAACGGTTCGCTAT
GAGGCCAATGGCGTTCAGGGTTTCAAGGCCGAGGCGAGTAACCAGCCCCA
AGCACCCGTGGACAAGGGAAAGGCTCCATTGCCGGTAACCGATACGGAGG
AGGTGCAGCAGGCTCGTCTAAATCACCTGAATGCTTTGAGGGAAGCCAGG
GAGAAAGCTTTAGCCACCAGTTTGCGTGAGGAGGCGGACAGAAGGCAGCA
GGAGCAGATCAGAAACAACAATGAGGATCAGCAGTCGGGGGAGCAGAGTC
TGACCGATGAGGATGCGGCGATCTTGGAGAGAGTACGAGCCGAGCTATCA
GCCATGTTGGCCGATCGTCAGCGAGAGCTTAATCTGCCTAGGAACAGGGA
TGACCGGGAGCAGCGAGAGAAGCAGGAAATCCGACAGGATCAGAGGAAGG
AACTGAGACAAGATCTGAGACAGGAGCAGAGGCAGGATCAGCGAGAAGAT
CGACGACAAGATCAGCGAGAAGATCGACGACAAAATCAGCGAGAAGATCG
ACGACAAGATCAGCGAGAAGAGAGGCGAGAGGATCAGCGAGAAGAGAGGG
GAGAGGATCAGCGAGAAGAGAGGCGAGAGGATCGTCGTGAAGATCGTCGA
GAAGATCGCCGTCAGGACCTAAGAATTGACCAAGAATCCCGTCAAGATCT
GCTCCAAGACCTGCGTCAAGATCTGCGCCAAGATCTGCGTCAAGAACTGC
GCCAGGACCTGCGCCAAGATCAGTCCCGAAACCAAGAATCTTTGCGAGAC
TCGAGTCAAATCCGGGAGAATGCTCGTCAGATCTCATCTGATCGCGATGG
CGATGATCTGCGCCTGCGCACCGTCTACTCCTTGGCTGATCTAAGCTCCA
GCAGTTACCTGAAACTCGGCGACTTGGCCAGTGCCGAGAAACTGCTCGAG
GATCGTTTGGACAACAGTGATCTCCGTGTGCCAATAGGTGCCTACTACAC
CCTGGTTTCTCCCAACACCAAGTACAGTGTTACCACGCCCACGGAACTGC
GAACCCTGCGCCCAGTGGCCCTTAGTCGCAGTTTGTTGGTAAGCAAACGC
AATTAAAAGCTTTCTAGACCAT
BS05658.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr72Ec-RA | 1290 | CG4784-PA | 1..1290 | 17..1306 | 6450 | 100 | Plus |
Cpr72Ec-RA | 1290 | CG4784-PA | 694..846 | 686..838 | 510 | 88.9 | Plus |
Cpr72Ec-RA | 1290 | CG4784-PA | 670..822 | 710..862 | 510 | 88.9 | Plus |
Cpr72Ec-RA | 1290 | CG4784-PA | 719..827 | 687..795 | 320 | 86.2 | Plus |
Cpr72Ec-RA | 1290 | CG4784-PA | 874..929 | 914..969 | 190 | 89.3 | Plus |
Cpr72Ec-RA | 1290 | CG4784-PA | 898..953 | 890..945 | 190 | 89.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr72Ec-RA | 1447 | CG4784-RA | 33..1322 | 17..1306 | 6450 | 100 | Plus |
Cpr72Ec-RA | 1447 | CG4784-RA | 702..854 | 710..862 | 510 | 88.9 | Plus |
Cpr72Ec-RA | 1447 | CG4784-RA | 726..878 | 686..838 | 510 | 88.9 | Plus |
Cpr72Ec-RA | 1447 | CG4784-RA | 751..859 | 687..795 | 320 | 86.2 | Plus |
Cpr72Ec-RA | 1447 | CG4784-RA | 906..961 | 914..969 | 190 | 89.3 | Plus |
Cpr72Ec-RA | 1447 | CG4784-RA | 930..985 | 890..945 | 190 | 89.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16366019..16367308 | 1306..17 | 6450 | 100 | Minus |
3L | 28110227 | 3L | 16366463..16366615 | 838..686 | 510 | 88.9 | Minus |
3L | 28110227 | 3L | 16366487..16366639 | 862..710 | 510 | 88.9 | Minus |
3L | 28110227 | 3L | 16366482..16366590 | 795..687 | 320 | 86.2 | Minus |
3L | 28110227 | 3L | 16366356..16366411 | 945..890 | 190 | 89.3 | Minus |
3L | 28110227 | 3L | 16366380..16366435 | 969..914 | 190 | 89.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:53:33 has no hits.
BS05658.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:52 Download gff for
BS05658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr72Ec-RA | 1..1290 | 17..1306 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:38 Download gff for
BS05658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr72Ec-RA | 11..1312 | 10..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:21 Download gff for
BS05658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr72Ec-RA | 33..1320 | 17..1304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:52 Download gff for
BS05658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr72Ec-RA | 11..1312 | 10..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:15 Download gff for
BS05658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr72Ec-RA | 33..1320 | 17..1304 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:15 Download gff for
BS05658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16366021..16367308 | 17..1304 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:21 Download gff for
BS05658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16359121..16360408 | 17..1304 | 100 | | Minus |
BS05658.pep Sequence
Translation from 16 to 1305
> BS05658.pep
MHCFTWTILGGLLALTSAAGLPQRPSSGYQEQDTARAFYSYGYRDENAAR
AEYSSRDGTSRGFYSYVDADGKLQTVRYEANGVQGFKAEASNQPQAPVDK
GKAPLPVTDTEEVQQARLNHLNALREAREKALATSLREEADRRQQEQIRN
NNEDQQSGEQSLTDEDAAILERVRAELSAMLADRQRELNLPRNRDDREQR
EKQEIRQDQRKELRQDLRQEQRQDQREDRRQDQREDRRQNQREDRRQDQR
EERREDQREERGEDQREERREDRREDRREDRRQDLRIDQESRQDLLQDLR
QDLRQDLRQELRQDLRQDQSRNQESLRDSSQIRENARQISSDRDGDDLRL
RTVYSLADLSSSSYLKLGDLASAEKLLEDRLDNSDLRVPIGAYYTLVSPN
TKYSVTTPTELRTLRPVALSRSLLVSKRN*
BS05658.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr72Ec-PA | 429 | CG4784-PA | 1..429 | 1..429 | 2160 | 100 | Plus |
CG2839-PA | 826 | CG2839-PA | 348..581 | 125..351 | 249 | 25.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 464..679 | 125..347 | 249 | 27.4 | Plus |
CG2839-PA | 826 | CG2839-PA | 253..463 | 139..349 | 242 | 22.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 263..534 | 87..343 | 242 | 21.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 401..617 | 137..351 | 238 | 25.6 | Plus |
CG2839-PA | 826 | CG2839-PA | 384..605 | 125..351 | 237 | 23.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 437..677 | 111..351 | 237 | 23.6 | Plus |
CG2839-PA | 826 | CG2839-PA | 470..701 | 125..351 | 236 | 24.6 | Plus |
CG2839-PA | 826 | CG2839-PA | 500..729 | 125..349 | 236 | 23.3 | Plus |
CG2839-PA | 826 | CG2839-PA | 373..599 | 125..351 | 235 | 23.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 407..621 | 125..343 | 234 | 24 | Plus |
CG2839-PA | 826 | CG2839-PA | 476..713 | 125..351 | 233 | 23.6 | Plus |
CG2839-PA | 826 | CG2839-PA | 286..507 | 128..351 | 231 | 22.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 336..563 | 125..349 | 230 | 23.2 | Plus |
CG2839-PA | 826 | CG2839-PA | 400..623 | 126..351 | 229 | 23.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 534..741 | 125..338 | 226 | 22.4 | Plus |
CG2839-PA | 826 | CG2839-PA | 515..735 | 111..338 | 224 | 22.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 409..653 | 111..351 | 223 | 22.9 | Plus |
Cry-PB | 477 | CG16963-PB | 69..328 | 30..307 | 221 | 27.7 | Plus |
Cry-PA | 477 | CG16963-PA | 69..328 | 30..307 | 221 | 27.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 533..769 | 109..345 | 213 | 21.8 | Plus |
CG12239-PA | 650 | CG12239-PA | 340..583 | 109..353 | 213 | 28.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 265..425 | 196..351 | 170 | 23 | Plus |