Clone Sequence Records
BS05659.3prime Sequence
933 bp (824 high quality bases) assembled on 2005-12-02
> BS05659.3prime
ATGGTCTAGAAAGCTTCTATTCTGCGGTTAGTTTCTTTAACTTCTTGGGT
GTCTTAATATTAGGTGTTTTCTCCTTGGGCGACTTTCTCTTAAGGTTTTC
CTTCGGCTGGTGCTTAGTATTTACTTCTGGTTTCTTAATTTTAGGTGCTT
CTCCTTTTTCCGACTTGGACTTCTTATCGTTTTGTTTCGTACTCAGTGGA
TTCTTCTCTGGGGATTTCCCTTTCTCGGCCTTTCGCTTGAGCTTATTTTT
AGAGCTCCGCTTGTTCTGAGTGTTGAAGCGCAATATAAGTGGCGTGCCAG
CCAGGCTGAGCTTCTCCTTGATGGCCTTGCGTGCATCGTGGGTCGTTGGC
AGGGTTACGGTCGCCGTGCTGTAGTCCCGGAATTTACCCTTGCCCGGTCG
TATTTGAATGTCCACTGCCTGGTCGTGGAACAGCTGGCGCACCTGGGGCA
ACGAACTGGTCTTTGGCAGATTGGTAATGACCACGGACGAGGTGAAGTTA
CCCTTGGTGAGGACCTTCTTAGTAGCACGCTTCATCAGGGCCTTGGTACG
TTTGTTTACGATGGATGTCTGCTTGCGGGTCACCAGCTCGTTGACAAAAT
CATCGGAATCCGTCTTAGGCAGTGATACGAATAAGCCCTTGTGCTTGTCA
TCCTTTTCGATCGAAGCCTTGATATCCTTAAAGGCTTGATCGCGATCTTC
CTTCGACTTGAAATCGACGAGGCAGAAACGTGCATGCTTCTGGCGAGGCT
TTGTGGACTTCAGAACCAGTGGATGCAGAGCCTTCACCTTGGCATTGAAT
TCATCCAAGTCCAGGGGCAGTTTTTGGGGAAACCGGACATACAGCCGGGT
GCCCTTTAACTGCTCGTACTTGGGTGTGGATCTTCTCGTCGATAATCTCG
GCACGGCTTTTGGGCTGCGGTTTGATTGTATCT
BS05659.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-PA | 1125 | CG18178-RA | 269..1125 | 873..17 | 4285 | 100 | Minus |
| CG18178-PA | 1125 | CG18178-RA | 210..270 | 933..873 | 305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-RB | 1278 | CG18178-RB | 290..1206 | 933..16 | 4565 | 99.9 | Minus |
| CG18178-RA | 1310 | CG18178-RA | 322..1238 | 933..16 | 4565 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9717858..9718774 | 16..933 | 4540 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-03 13:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 4696..4779 | 200..115 | 119 | 63.2 | Minus |
BS05659.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:10 Download gff for
BS05659.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-PA | 210..1125 | 17..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:15 Download gff for
BS05659.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-PA | 210..1125 | 17..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:02:33 Download gff for
BS05659.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 322..1238 | 16..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:51:21 Download gff for
BS05659.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 322..1238 | 16..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:51:21 Download gff for
BS05659.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9717858..9718774 | 16..933 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:02:33 Download gff for
BS05659.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9710958..9711874 | 16..933 | 99 | | Plus |
BS05659.5prime Sequence
826 bp (825 high quality bases) assembled on 2005-12-02
> BS05659.5prime
GAAGTTATCAGTCGACATGAAGAAAAAGCAGGTGGAAAGTGCATCCGAGG
AGGAGGAAGTGCAGTCCGAAAACTCCGAGGCTTCCGACGAGGAGGAGCTA
CAGGCAGAGGACTCCGACGAGGACCAGCTGCAGGCGGACGACTCCGAAGA
CGAAGATTCCGATGGATCCGAACTGGATCTGGACGCCAGTGACACCGAAT
CCGATGAAGATGATGGTGAGGAGGAAGATACAATCAAACCGCAGCCCAAA
AGCCGTGCCGAGATTATCGACGAGAAGATCCACACCAAGTACGAGCAGTT
AAAGGGCACCCGGCTGTATGTCCGGTTTCCCCAAAAACTGCCCCTGGACT
TGGATGAATTCAATGCCAAGGTGAAGGCTCTGCATCCACTGGTTCTGAAG
TCCACAAAGCCTCGCCAGAAGCATGCACGTTTCTGCCTCGTCGATTTCAA
GTCGAAGGAAGATCGCGATCAAGCCTTTAAGGATATCAAGGCTTCGATCG
AAAAGGATGACAAGCACAAGGGCTTATTCGTATCACTGCCTAAGACGGAT
TCCGATGATTTTGTCAACGAGCTGGTGACCCGCAAGCAGACATCCATCGT
AAACAAACGTACCAAGGCCCTGATGAAGCGTGCTACTAAGAAGGTCCTCA
CCAAGGGTAACTTCACCTCGTCCGTGGTCATTACCAATCTGCCAAAGACC
AGTTCGTTGCCCCAGGTGCGCCAGCTGTTCCACGACCAGGCAGTGGACAT
TCAAATACGACCGGGCAAGGGTAAATTCCGGGACTACAGCACGGCGACCG
TAACCCTGCCAACGACCCACGATGCA
BS05659.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-PA | 1125 | CG18178-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-RB | 1278 | CG18178-RB | 79..890 | 15..826 | 4060 | 100 | Plus |
| CG18178-RA | 1310 | CG18178-RA | 111..922 | 15..826 | 4060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9718174..9718985 | 826..15 | 4060 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:22:52 has no hits.
BS05659.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:11 Download gff for
BS05659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:16 Download gff for
BS05659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:28 Download gff for
BS05659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 111..921 | 15..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:27 Download gff for
BS05659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 111..921 | 15..825 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:27 Download gff for
BS05659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9718175..9718985 | 15..825 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:28 Download gff for
BS05659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9711275..9712085 | 15..825 | 100 | | Minus |
BS05659.complete Sequence
1157 bp (1157 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635200
> BS05659.complete
GAAGTTATCAGTCGACATGAAGAAAAAGCAGGTGGAAAGTGCATCCGAGG
AGGAGGAAGTGCAGTCCGAAAACTCCGAGGCTTCCGACGAGGAGGAGCTA
CAGGCAGAGGACTCCGACGAGGACCAGCTGCAGGCGGACGACTCCGAAGA
CGAAGATTCCGATGGATCCGAACTGGATCTGGACGCCAGTGACACCGAAT
CCGATGAAGATGATGGTGAGGAGGAAGATACAATCAAACCGCAGCCCAAA
AGCCGTGCCGAGATTATCGACGAGAAGATCCACACCAAGTACGAGCAGTT
AAAGGGCACCCGGCTGTATGTCCGGTTTCCCCAAAAACTGCCCCTGGACT
TGGATGAATTCAATGCCAAGGTGAAGGCTCTGCATCCACTGGTTCTGAAG
TCCACAAAGCCTCGCCAGAAGCATGCACGTTTCTGCCTCGTCGATTTCAA
GTCGAAGGAAGATCGCGATCAAGCCTTTAAGGATATCAAGGCTTCGATCG
AAAAGGATGACAAGCACAAGGGCTTATTCGTATCACTGCCTAAGACGGAT
TCCGATGATTTTGTCAACGAGCTGGTGACCCGCAAGCAGACATCCATCGT
AAACAAACGTACCAAGGCCCTGATGAAGCGTGCTACTAAGAAGGTCCTCA
CCAAGGGTAACTTCACCTCGTCCGTGGTCATTACCAATCTGCCAAAGACC
AGTTCGTTGCCCCAGGTGCGCCAGCTGTTCCACGACCAGGCAGTGGACAT
TCAAATACGACCGGGCAAGGGTAAATTCCGGGACTACAGCACGGCGACCG
TAACCCTGCCAACGACCCACGATGCACGCAAGGCCATCAAGGAGAAGCTC
AGCCTGGCTGGCACGCCACTTATATTGCGCTTCAACACTCAGAACAAGCG
GAGCTCTAAAAATAAGCTCAAGCGAAAGGCCGAGAAAGGGAAATCCCCAG
AGAAGAATCCACTGAGTACGAAACAAAACGATAAGAAGTCCAAGTCGGAA
AAAGGAGAAGCACCTAAAATTAAGAAACCAGAAGTAAATACTAAGCACCA
GCCGAAGGAAAACCTTAAGAGAAAGTCGCCCAAGGAGAAAACACCTAATA
TTAAGACACCCAAGAAGTTAAAGAAACTAACCGCAGAATAGAAGCTTTCT
AGACCAT
BS05659.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-RB | 1125 | CG18178-PB | 1..1125 | 17..1141 | 5625 | 100 | Plus |
| CG18178-RA | 1125 | CG18178-PA | 1..1125 | 17..1141 | 5625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-RB | 1278 | CG18178-RB | 79..1206 | 15..1142 | 5640 | 100 | Plus |
| CG18178-RA | 1310 | CG18178-RA | 111..1238 | 15..1142 | 5640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9717858..9718985 | 1142..15 | 5640 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 4696..4779 | 958..1043 | 119 | 63.2 | Plus |
BS05659.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:49 Download gff for
BS05659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 1..1125 | 17..1141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:22 Download gff for
BS05659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 82..1209 | 15..1142 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:49 Download gff for
BS05659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 113..1237 | 17..1141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:49 Download gff for
BS05659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 108..1235 | 15..1142 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:07 Download gff for
BS05659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 113..1237 | 17..1141 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:07 Download gff for
BS05659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9717859..9718983 | 17..1141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:49 Download gff for
BS05659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9710959..9712083 | 17..1141 | 100 | | Minus |
BS05659.pep Sequence
Translation from 16 to 1140
> BS05659.pep
MKKKQVESASEEEEVQSENSEASDEEELQAEDSDEDQLQADDSEDEDSDG
SELDLDASDTESDEDDGEEEDTIKPQPKSRAEIIDEKIHTKYEQLKGTRL
YVRFPQKLPLDLDEFNAKVKALHPLVLKSTKPRQKHARFCLVDFKSKEDR
DQAFKDIKASIEKDDKHKGLFVSLPKTDSDDFVNELVTRKQTSIVNKRTK
ALMKRATKKVLTKGNFTSSVVITNLPKTSSLPQVRQLFHDQAVDIQIRPG
KGKFRDYSTATVTLPTTHDARKAIKEKLSLAGTPLILRFNTQNKRSSKNK
LKRKAEKGKSPEKNPLSTKQNDKKSKSEKGEAPKIKKPEVNTKHQPKENL
KRKSPKEKTPNIKTPKKLKKLTAE*
BS05659.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-PB | 374 | CG18178-PB | 1..374 | 1..374 | 1895 | 100 | Plus |
| CG18178-PA | 374 | CG18178-PA | 1..374 | 1..374 | 1895 | 100 | Plus |
