Clone Sequence Records
BS05661.3prime Sequence
675 bp (674 high quality bases) assembled on 2005-12-02
> BS05661.3prime
ATGGTCTAGAAAGCTTTTAAGCCTTCGTCCATATACCACTGGCCACCCCC
TGCACCAAAGCCTGAGCCAATTTGGTGTAGTCCATTAGCTGGAGCTCAGG
AAGTTGGCTCTTCAGGTTCTGGGGAAACTCCAAGAAGGTTGTGATCAGAC
TGTCCTTGGTTTCGGTGGCCAACTGGGTGACGTTGGAAACCAATTCCGAC
CTGTCCTGTCGACTGAGTCGCAGATACTTGGTAAGATGCGGCTTGACCTT
GGCGAAGAATCTGCGGATGGCGATCTTCTCGCCGGGAAGAACCTCGACGA
GCAACTTATCGGGAGTCTTATGGTACATGAGGTCGCTGTTTATCCAGGCG
AAGATATAGAATGCAGTGCTGTAATAGTCCTCGTTCCCAGCAACCAGGTC
GAGCTCCTCGAAGTACTGCCGATCGATGGTTTCGTTGGCCGGAAGACCTG
GTAGTCGTTGGCGGGCATCTTCGATGGTCGTGTAGAGCACCTGATTGAAG
AGCCTCTCCACCGCTTGAATTGTATTTCTCACCAAGATGGTAGGGCTGCG
TTCTTTCACTTGGGATGAGTCCGCCAGAGCCAGACAGATAAGACCCAGAA
GCATCGAACAGCAAGTGCTGCCGCCGATAAGAAACCTCGAACTGCGCCCT
GATCTCGCCATGTCGACTGATAACT
BS05661.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10658-PA | 645 | Os9-RA | 1..645 | 661..17 | 3200 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hf-RA | 896 | CG10658-RA | 31..676 | 662..17 | 3215 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:42:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19966947..19967511 | 17..581 | 2810 | 99.8 | Plus |
| 2L | 23513712 | 2L | 19967573..19967655 | 580..662 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:42:12 has no hits.
BS05661.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:14 Download gff for
BS05661.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Os9-PA | 1..645 | 17..661 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:21 Download gff for
BS05661.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10658-PA | 1..645 | 17..661 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:02:58 Download gff for
BS05661.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 17..680 | 11..675 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:51:37 Download gff for
BS05661.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 17..680 | 11..675 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:51:37 Download gff for
BS05661.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19966943..19967510 | 11..580 | 99 | <- | Plus |
| 2L | 19967574..19967669 | 581..675 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:02:58 Download gff for
BS05661.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19966943..19967510 | 11..580 | 99 | <- | Plus |
| arm_2L | 19967574..19967669 | 581..675 | 94 | | Plus |
BS05661.5prime Sequence
675 bp (674 high quality bases) assembled on 2005-12-02
> BS05661.5prime
GAAGTTATCAGTCGACATGGCGAGATCAGGGCGCAGTTCGAGGTTTCTTA
TCGGCGGCAGCACTTGCTGTTCGATGCTTCTGGGTCTTATCTGTCTGGCT
CTGGCGGACTCATCCCAAGTGAAAGAACGCAGCCCTACCATCTTGGTGAG
AAATACAATTCAAGCGGTGGAGAGGCTCTTCAATCAGGTGCTCTACACGA
CCATCGAAGATGCCCGCCAACGACTACCAGGTCTTCCGGCCAACGAAACC
ATCGATCGGCAGTACTTCGAGGAGCTCGACCTGGTTGCTGGGAACGAGGA
CTATTACAGCACTGCATTCTATATCTTCGCCTGGATAAACAGCGACCTCA
TGTACCATAAGACTCCCGATAAGTTGCTCGTCGAGGTTCTTCCCGGCGAG
AAGATCGCCATCCGCAGATTCTTCGCCAAGGTCAAGCCGCATCTTACCAA
GTATCTGCGACTCAGTCGACAGGACAGGTCGGAATTGGTTTCCAACGTCA
CCCAGTTGGCCACCGAAACCAAGGACAGTCTGATCACAACCTTCTTGGAG
TTTCCCCAGAACCTGAAGAGCCAACTTCCTGAGCTCCAGCTAATGGACTA
CACCAAATTGGCTCAGGCTTTGGTGCAGGGGGTGGCCAGTGGTATATGGA
CGAAGGCTTAAAAGCTTTCTAGACC
BS05661.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10658-PA | 645 | Os9-RA | 1..645 | 17..661 | 3200 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hf-RA | 896 | CG10658-RA | 31..676 | 16..661 | 3215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19966947..19967511 | 661..97 | 2810 | 99.8 | Minus |
| 2L | 23513712 | 2L | 19967573..19967655 | 98..16 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:54:28 has no hits.
BS05661.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:15 Download gff for
BS05661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Os9-PA | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:22 Download gff for
BS05661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10658-PA | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:02:48 Download gff for
BS05661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 17..680 | 3..667 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:49 Download gff for
BS05661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 17..680 | 3..667 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:49 Download gff for
BS05661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19966943..19967510 | 98..667 | 99 | <- | Minus |
| 2L | 19967574..19967669 | 3..97 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:02:48 Download gff for
BS05661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19966943..19967510 | 98..667 | 99 | <- | Minus |
| arm_2L | 19967574..19967669 | 3..97 | 94 | | Minus |
BS05661.complete Sequence
677 bp (677 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635201
> BS05661.complete
GAAGTTATCAGTCGACATGGCGAGATCAGGGCGCAGTTCGAGGTTTCTTA
TCGGCGGCAGCACTTGCTGTTCGATGCTTCTGGGTCTTATCTGTCTGGCT
CTGGCGGACTCATCCCAAGTGAAAGAACGCAGCCCTACCATCTTGGTGAG
AAATACAATTCAAGCGGTGGAGAGGCTCTTCAATCAGGTGCTCTACACGA
CCATCGAAGATGCCCGCCAACGACTACCAGGTCTTCCGGCCAACGAAACC
ATCGATCGGCAGTACTTCGAGGAGCTCGACCTGGTTGCTGGGAACGAGGA
CTATTACAGCACTGCATTCTATATCTTCGCCTGGATAAACAGCGACCTCA
TGTACCATAAGACTCCCGATAAGTTGCTCGTCGAGGTTCTTCCCGGCGAG
AAGATCGCCATCCGCAGATTCTTCGCCAAGGTCAAGCCGCATCTTACCAA
GTATCTGCGACTCAGTCGACAGGACAGGTCGGAATTGGTTTCCAACGTCA
CCCAGTTGGCCACCGAAACCAAGGACAGTCTGATCACAACCTTCTTGGAG
TTTCCCCAGAACCTGAAGAGCCAACTTCCTGAGCTCCAGCTAATGGACTA
CACCAAATTGGCTCAGGCTTTGGTGCAGGGGGTGGCCAGTGGTATATGGA
CGAAGGCTTAAAAGCTTTCTAGACCAT
BS05661.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hf-RA | 645 | CG10658-PA | 1..645 | 17..661 | 3210 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hf-RA | 896 | CG10658-RA | 31..676 | 16..661 | 3215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19966947..19967511 | 661..97 | 2810 | 99.8 | Minus |
| 2L | 23513712 | 2L | 19967573..19967655 | 98..16 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:20:45 has no hits.
BS05661.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:32 Download gff for
BS05661.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:15 Download gff for
BS05661.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 3..662 | 7..667 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:46 Download gff for
BS05661.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 32..674 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:32 Download gff for
BS05661.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 3..662 | 7..667 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:15 Download gff for
BS05661.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 32..674 | 17..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:15 Download gff for
BS05661.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19966949..19967510 | 98..659 | 99 | <- | Minus |
| 2L | 19967574..19967654 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:46 Download gff for
BS05661.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19966949..19967510 | 98..659 | 99 | <- | Minus |
| arm_2L | 19967574..19967654 | 17..97 | 100 | | Minus |
BS05661.pep Sequence
Translation from 16 to 660
> BS05661.pep
MARSGRSSRFLIGGSTCCSMLLGLICLALADSSQVKERSPTILVRNTIQA
VERLFNQVLYTTIEDARQRLPGLPANETIDRQYFEELDLVAGNEDYYSTA
FYIFAWINSDLMYHKTPDKLLVEVLPGEKIAIRRFFAKVKPHLTKYLRLS
RQDRSELVSNVTQLATETKDSLITTFLEFPQNLKSQLPELQLMDYTKLAQ
ALVQGVASGIWTKA*
BS05661.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hf-PA | 214 | CG10658-PA | 1..214 | 1..214 | 1081 | 100 | Plus |
