Clone Sequence Records
BS05662.5prime Sequence
765 bp (764 high quality bases) assembled on 2005-12-02
> BS05662.5prime
GAAGTTATCAGTCGACATGGTGTACACCGGTTACGTAAGCAACGGATTGC
AGAATGCTGAGGAAACTGCATGGGTGCCGTATGGAGATCCCAATGACTGG
TCACATGGTCTGGCAGTTTATGATGGTTTGGAACTGATGAGCGGCAATGA
GGAGGAGTTGCAGCCCTCATTGAACCGGGTGATGAAAAACATCGACTACG
ACCTGGCCATGAAGCATCCATTGGAGCATACCTGGACTTTGTGGCACTTG
GAGAACGATCGTACCAAGCGCTGGGCCGAAATGCTCGTCGATGTGACCAG
CTTCAACACCGTTGAGGACTTCTTCAGTGTGTACTACTTTGTGAAGCCGC
CATCGGATCTGAAGATATTCAATGACTACATGGTCTTCAAGAAAAATATT
CGTCCCATGTGGGAGGATGACACCAATAAGAACGGTGGTCGTTGGATACT
GCTCCTGGACAAGGCCTCCAGGACCTATATAGATAAGATGTGGCACGATT
TGCTTTTGTGCATGATTGGCGAGTGCTTCCAGCACTCGGACGAGATATGT
GGAGTGGTCATCAATGTGCGCAACAAGGCTAATAAGCTATCCCTTTGGAC
GAAGGACTCTCGCAATGTAGAGGCTATCCTGTCCATTGGCAGGCAGATAA
AGGAGCTGCTGCATCTGGGCATTATGGAAATCCAGTACCAGGTGCACAAG
GATGCCATGGTGAACCATGGACCCAATGTCAATGCCATCTACACATTGTA
GAAGCTTTCTAGACC
BS05662.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8023-PA | 735 | CG8023-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-3-RA | 1040 | CG8023-RA | 159..893 | 17..751 | 3675 | 100 | Plus |
eIF-4E-RI | 1793 | CG4035-RI | 1019..1324 | 232..537 | 210 | 72.1 | Plus |
eIF-4E-RH | 1492 | CG4035-RH | 718..1023 | 232..537 | 210 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8229498..8229757 | 68..327 | 1300 | 100 | Plus |
3L | 28110227 | 3L | 8230261..8230421 | 591..751 | 805 | 100 | Plus |
3L | 28110227 | 3L | 8229952..8230052 | 402..502 | 505 | 100 | Plus |
3L | 28110227 | 3L | 8230115..8230203 | 502..590 | 445 | 100 | Plus |
3L | 28110227 | 3L | 8229821..8229898 | 325..402 | 390 | 100 | Plus |
3L | 28110227 | 3L | 8229382..8229433 | 17..68 | 260 | 100 | Plus |
3L | 28110227 | 3L | 7895198..7895260 | 212..274 | 180 | 85.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:17:28 has no hits.
BS05662.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:17 Download gff for
BS05662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8023-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:25 Download gff for
BS05662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8023-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:35 Download gff for
BS05662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 159..895 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:36 Download gff for
BS05662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 159..895 | 17..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:36 Download gff for
BS05662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8229382..8229433 | 17..68 | 100 | -> | Plus |
3L | 8229499..8229757 | 69..327 | 100 | -> | Plus |
3L | 8229824..8229898 | 328..402 | 100 | -> | Plus |
3L | 8229953..8230052 | 403..502 | 100 | -> | Plus |
3L | 8230116..8230203 | 503..590 | 100 | -> | Plus |
3L | 8230261..8230423 | 591..755 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:35 Download gff for
BS05662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8222924..8222998 | 328..402 | 100 | -> | Plus |
arm_3L | 8223053..8223152 | 403..502 | 100 | -> | Plus |
arm_3L | 8223216..8223303 | 503..590 | 100 | -> | Plus |
arm_3L | 8223361..8223523 | 591..755 | 98 | | Plus |
arm_3L | 8222482..8222533 | 17..68 | 100 | -> | Plus |
arm_3L | 8222599..8222857 | 69..327 | 100 | -> | Plus |
BS05662.3prime Sequence
765 bp (764 high quality bases) assembled on 2005-12-02
> BS05662.3prime
ATGGTCTAGAAAGCTTCTACAATGTGTAGATGGCATTGACATTGGGTCCA
TGGTTCACCATGGCATCCTTGTGCACCTGGTACTGGATTTCCATAATGCC
CAGATGCAGCAGCTCCTTTATCTGCCTGCCAATGGACAGGATAGCCTCTA
CATTGCGAGAGTCCTTCGTCCAAAGGGATAGCTTATTAGCCTTGTTGCGC
ACATTGATGACCACTCCACATATCTCGTCCGAGTGCTGGAAGCACTCGCC
AATCATGCACAAAAGCAAATCGTGCCACATCTTATCTATATAGGTCCTGG
AGGCCTTGTCCAGGAGCAGTATCCAACGACCACCGTTCTTATTGGTGTCA
TCCTCCCACATGGGACGAATATTTTTCTTGAAGACCATGTAGTCATTGAA
TATCTTCAGATCCGATGGCGGCTTCACAAAGTAGTACACACTGAAGAAGT
CCTCAACGGTGTTGAAGCTGGTCACATCGACGAGCATTTCGGCCCAGCGC
TTGGTACGATCGTTCTCCAAGTGCCACAAAGTCCAGGTATGCTCCAATGG
ATGCTTCATGGCCAGGTCGTAGTCGATGTTTTTCATCACCCGGTTCAATG
AGGGCTGCAACTCCTCCTCATTGCCGCTCATCAGTTCCAAACCATCATAA
ACTGCCAGACCATGTGACCAGTCATTGGGATCTCCATACGGCACCCATGC
AGTTTCCTCAGCATTCTGCAATCCGTTGCTTACGTAACCGGTGTACACCA
TGTCGACTGATAACT
BS05662.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8023-PA | 735 | CG8023-RA | 1..735 | 751..17 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-3-RA | 1040 | CG8023-RA | 159..893 | 751..17 | 3675 | 100 | Minus |
eIF-4E-RI | 1793 | CG4035-RI | 1019..1324 | 536..231 | 210 | 72.1 | Minus |
eIF-4E-RH | 1492 | CG4035-RH | 718..1023 | 536..231 | 210 | 72.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8229498..8229757 | 700..441 | 1300 | 100 | Minus |
3L | 28110227 | 3L | 8230261..8230421 | 177..17 | 805 | 100 | Minus |
3L | 28110227 | 3L | 8229952..8230052 | 366..266 | 505 | 100 | Minus |
3L | 28110227 | 3L | 8230115..8230203 | 266..178 | 445 | 100 | Minus |
3L | 28110227 | 3L | 8229821..8229898 | 443..366 | 390 | 100 | Minus |
3L | 28110227 | 3L | 8229382..8229433 | 751..700 | 260 | 100 | Minus |
3L | 28110227 | 3L | 7895198..7895260 | 556..494 | 180 | 85.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:33:39 has no hits.
BS05662.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:16 Download gff for
BS05662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8023-PA | 1..735 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:24 Download gff for
BS05662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8023-PA | 1..735 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:53 Download gff for
BS05662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 159..895 | 13..751 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:54 Download gff for
BS05662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 159..895 | 13..751 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:54 Download gff for
BS05662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8229382..8229433 | 700..751 | 100 | -> | Minus |
3L | 8229499..8229757 | 441..699 | 100 | -> | Minus |
3L | 8229824..8229898 | 366..440 | 100 | -> | Minus |
3L | 8229953..8230052 | 266..365 | 100 | -> | Minus |
3L | 8230116..8230203 | 178..265 | 100 | -> | Minus |
3L | 8230261..8230423 | 13..177 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:53 Download gff for
BS05662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8222482..8222533 | 700..751 | 100 | -> | Minus |
arm_3L | 8222599..8222857 | 441..699 | 100 | -> | Minus |
arm_3L | 8222924..8222998 | 366..440 | 100 | -> | Minus |
arm_3L | 8223053..8223152 | 266..365 | 100 | -> | Minus |
arm_3L | 8223216..8223303 | 178..265 | 100 | -> | Minus |
arm_3L | 8223361..8223523 | 13..177 | 98 | | Minus |
BS05662.complete Sequence
767 bp (767 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635202
> BS05662.complete
GAAGTTATCAGTCGACATGGTGTACACCGGTTACGTAAGCAACGGATTGC
AGAATGCTGAGGAAACTGCATGGGTGCCGTATGGAGATCCCAATGACTGG
TCACATGGTCTGGCAGTTTATGATGGTTTGGAACTGATGAGCGGCAATGA
GGAGGAGTTGCAGCCCTCATTGAACCGGGTGATGAAAAACATCGACTACG
ACCTGGCCATGAAGCATCCATTGGAGCATACCTGGACTTTGTGGCACTTG
GAGAACGATCGTACCAAGCGCTGGGCCGAAATGCTCGTCGATGTGACCAG
CTTCAACACCGTTGAGGACTTCTTCAGTGTGTACTACTTTGTGAAGCCGC
CATCGGATCTGAAGATATTCAATGACTACATGGTCTTCAAGAAAAATATT
CGTCCCATGTGGGAGGATGACACCAATAAGAACGGTGGTCGTTGGATACT
GCTCCTGGACAAGGCCTCCAGGACCTATATAGATAAGATGTGGCACGATT
TGCTTTTGTGCATGATTGGCGAGTGCTTCCAGCACTCGGACGAGATATGT
GGAGTGGTCATCAATGTGCGCAACAAGGCTAATAAGCTATCCCTTTGGAC
GAAGGACTCTCGCAATGTAGAGGCTATCCTGTCCATTGGCAGGCAGATAA
AGGAGCTGCTGCATCTGGGCATTATGGAAATCCAGTACCAGGTGCACAAG
GATGCCATGGTGAACCATGGACCCAATGTCAATGCCATCTACACATTGTA
GAAGCTTTCTAGACCAT
BS05662.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-3-RA | 735 | CG8023-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
eIF-4E-RI | 780 | CG4035-PI | 258..563 | 232..537 | 210 | 71.2 | Plus |
eIF-4E-RH | 780 | CG4035-PH | 258..563 | 232..537 | 210 | 71.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-3-RA | 1040 | CG8023-RA | 159..893 | 17..751 | 3675 | 100 | Plus |
eIF-4E-RI | 1793 | CG4035-RI | 1019..1324 | 232..537 | 210 | 71.2 | Plus |
eIF-4E-RH | 1492 | CG4035-RH | 718..1023 | 232..537 | 210 | 71.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8229498..8229757 | 68..327 | 1300 | 100 | Plus |
3L | 28110227 | 3L | 8230261..8230421 | 591..751 | 805 | 100 | Plus |
3L | 28110227 | 3L | 8229952..8230052 | 402..502 | 505 | 100 | Plus |
3L | 28110227 | 3L | 8230115..8230203 | 502..590 | 445 | 100 | Plus |
3L | 28110227 | 3L | 8229821..8229898 | 325..402 | 390 | 100 | Plus |
3L | 28110227 | 3L | 8229382..8229433 | 17..68 | 260 | 100 | Plus |
3L | 28110227 | 3L | 7895198..7895260 | 212..274 | 180 | 85.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:45:05 has no hits.
BS05662.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:33 Download gff for
BS05662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:17 Download gff for
BS05662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 150..886 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:07 Download gff for
BS05662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 159..893 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:34 Download gff for
BS05662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 150..886 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:30 Download gff for
BS05662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 159..893 | 17..751 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:30 Download gff for
BS05662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8229382..8229433 | 17..68 | 100 | -> | Plus |
3L | 8229499..8229757 | 69..327 | 100 | -> | Plus |
3L | 8229824..8229898 | 328..402 | 100 | -> | Plus |
3L | 8229953..8230052 | 403..502 | 100 | -> | Plus |
3L | 8230116..8230203 | 503..590 | 100 | -> | Plus |
3L | 8230261..8230421 | 591..751 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:07 Download gff for
BS05662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8223053..8223152 | 403..502 | 100 | -> | Plus |
arm_3L | 8223216..8223303 | 503..590 | 100 | -> | Plus |
arm_3L | 8222482..8222533 | 17..68 | 100 | -> | Plus |
arm_3L | 8222599..8222857 | 69..327 | 100 | -> | Plus |
arm_3L | 8222924..8222998 | 328..402 | 100 | -> | Plus |
arm_3L | 8223361..8223521 | 591..751 | 100 | | Plus |
BS05662.pep Sequence
Translation from 16 to 750
> BS05662.pep
MVYTGYVSNGLQNAEETAWVPYGDPNDWSHGLAVYDGLELMSGNEEELQP
SLNRVMKNIDYDLAMKHPLEHTWTLWHLENDRTKRWAEMLVDVTSFNTVE
DFFSVYYFVKPPSDLKIFNDYMVFKKNIRPMWEDDTNKNGGRWILLLDKA
SRTYIDKMWHDLLLCMIGECFQHSDEICGVVINVRNKANKLSLWTKDSRN
VEAILSIGRQIKELLHLGIMEIQYQVHKDAMVNHGPNVNAIYTL*
BS05662.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-3-PA | 244 | CG8023-PA | 1..244 | 1..244 | 1329 | 100 | Plus |
eIF-4E-PC | 248 | CG4035-PC | 69..248 | 66..244 | 614 | 58.3 | Plus |
eIF-4E-PI | 259 | CG4035-PI | 80..259 | 66..244 | 614 | 58.3 | Plus |
eIF-4E-PH | 259 | CG4035-PH | 80..259 | 66..244 | 614 | 58.3 | Plus |
eIF-4E-PD | 259 | CG4035-PD | 80..259 | 66..244 | 614 | 58.3 | Plus |