Clone BS05662 Report

Search the DGRC for BS05662

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:62
Vector:pDNR-Dual
Associated Gene/TranscripteIF4E-3-RA
Protein status:BS05662.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05662.5prime Sequence

765 bp (764 high quality bases) assembled on 2005-12-02

> BS05662.5prime
GAAGTTATCAGTCGACATGGTGTACACCGGTTACGTAAGCAACGGATTGC
AGAATGCTGAGGAAACTGCATGGGTGCCGTATGGAGATCCCAATGACTGG
TCACATGGTCTGGCAGTTTATGATGGTTTGGAACTGATGAGCGGCAATGA
GGAGGAGTTGCAGCCCTCATTGAACCGGGTGATGAAAAACATCGACTACG
ACCTGGCCATGAAGCATCCATTGGAGCATACCTGGACTTTGTGGCACTTG
GAGAACGATCGTACCAAGCGCTGGGCCGAAATGCTCGTCGATGTGACCAG
CTTCAACACCGTTGAGGACTTCTTCAGTGTGTACTACTTTGTGAAGCCGC
CATCGGATCTGAAGATATTCAATGACTACATGGTCTTCAAGAAAAATATT
CGTCCCATGTGGGAGGATGACACCAATAAGAACGGTGGTCGTTGGATACT
GCTCCTGGACAAGGCCTCCAGGACCTATATAGATAAGATGTGGCACGATT
TGCTTTTGTGCATGATTGGCGAGTGCTTCCAGCACTCGGACGAGATATGT
GGAGTGGTCATCAATGTGCGCAACAAGGCTAATAAGCTATCCCTTTGGAC
GAAGGACTCTCGCAATGTAGAGGCTATCCTGTCCATTGGCAGGCAGATAA
AGGAGCTGCTGCATCTGGGCATTATGGAAATCCAGTACCAGGTGCACAAG
GATGCCATGGTGAACCATGGACCCAATGTCAATGCCATCTACACATTGTA
GAAGCTTTCTAGACC

BS05662.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8023-PA 735 CG8023-RA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-3-RA 1040 CG8023-RA 159..893 17..751 3675 100 Plus
eIF-4E-RI 1793 CG4035-RI 1019..1324 232..537 210 72.1 Plus
eIF-4E-RH 1492 CG4035-RH 718..1023 232..537 210 72.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8229498..8229757 68..327 1300 100 Plus
3L 28110227 3L 8230261..8230421 591..751 805 100 Plus
3L 28110227 3L 8229952..8230052 402..502 505 100 Plus
3L 28110227 3L 8230115..8230203 502..590 445 100 Plus
3L 28110227 3L 8229821..8229898 325..402 390 100 Plus
3L 28110227 3L 8229382..8229433 17..68 260 100 Plus
3L 28110227 3L 7895198..7895260 212..274 180 85.7 Plus
Blast to na_te.dros performed on 2015-02-11 16:17:28 has no hits.

BS05662.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:17 Download gff for BS05662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8023-PA 1..735 17..751 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:25 Download gff for BS05662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8023-PA 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:35 Download gff for BS05662.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 159..895 17..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:36 Download gff for BS05662.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 159..895 17..755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:36 Download gff for BS05662.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8229382..8229433 17..68 100 -> Plus
3L 8229499..8229757 69..327 100 -> Plus
3L 8229824..8229898 328..402 100 -> Plus
3L 8229953..8230052 403..502 100 -> Plus
3L 8230116..8230203 503..590 100 -> Plus
3L 8230261..8230423 591..755 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:35 Download gff for BS05662.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8222924..8222998 328..402 100 -> Plus
arm_3L 8223053..8223152 403..502 100 -> Plus
arm_3L 8223216..8223303 503..590 100 -> Plus
arm_3L 8223361..8223523 591..755 98   Plus
arm_3L 8222482..8222533 17..68 100 -> Plus
arm_3L 8222599..8222857 69..327 100 -> Plus

BS05662.3prime Sequence

765 bp (764 high quality bases) assembled on 2005-12-02

> BS05662.3prime
ATGGTCTAGAAAGCTTCTACAATGTGTAGATGGCATTGACATTGGGTCCA
TGGTTCACCATGGCATCCTTGTGCACCTGGTACTGGATTTCCATAATGCC
CAGATGCAGCAGCTCCTTTATCTGCCTGCCAATGGACAGGATAGCCTCTA
CATTGCGAGAGTCCTTCGTCCAAAGGGATAGCTTATTAGCCTTGTTGCGC
ACATTGATGACCACTCCACATATCTCGTCCGAGTGCTGGAAGCACTCGCC
AATCATGCACAAAAGCAAATCGTGCCACATCTTATCTATATAGGTCCTGG
AGGCCTTGTCCAGGAGCAGTATCCAACGACCACCGTTCTTATTGGTGTCA
TCCTCCCACATGGGACGAATATTTTTCTTGAAGACCATGTAGTCATTGAA
TATCTTCAGATCCGATGGCGGCTTCACAAAGTAGTACACACTGAAGAAGT
CCTCAACGGTGTTGAAGCTGGTCACATCGACGAGCATTTCGGCCCAGCGC
TTGGTACGATCGTTCTCCAAGTGCCACAAAGTCCAGGTATGCTCCAATGG
ATGCTTCATGGCCAGGTCGTAGTCGATGTTTTTCATCACCCGGTTCAATG
AGGGCTGCAACTCCTCCTCATTGCCGCTCATCAGTTCCAAACCATCATAA
ACTGCCAGACCATGTGACCAGTCATTGGGATCTCCATACGGCACCCATGC
AGTTTCCTCAGCATTCTGCAATCCGTTGCTTACGTAACCGGTGTACACCA
TGTCGACTGATAACT

BS05662.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8023-PA 735 CG8023-RA 1..735 751..17 3675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-3-RA 1040 CG8023-RA 159..893 751..17 3675 100 Minus
eIF-4E-RI 1793 CG4035-RI 1019..1324 536..231 210 72.1 Minus
eIF-4E-RH 1492 CG4035-RH 718..1023 536..231 210 72.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8229498..8229757 700..441 1300 100 Minus
3L 28110227 3L 8230261..8230421 177..17 805 100 Minus
3L 28110227 3L 8229952..8230052 366..266 505 100 Minus
3L 28110227 3L 8230115..8230203 266..178 445 100 Minus
3L 28110227 3L 8229821..8229898 443..366 390 100 Minus
3L 28110227 3L 8229382..8229433 751..700 260 100 Minus
3L 28110227 3L 7895198..7895260 556..494 180 85.7 Minus
Blast to na_te.dros performed on 2015-02-11 17:33:39 has no hits.

BS05662.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:16 Download gff for BS05662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8023-PA 1..735 17..751 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:24 Download gff for BS05662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8023-PA 1..735 17..751 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:53 Download gff for BS05662.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 159..895 13..751 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:54 Download gff for BS05662.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 159..895 13..751 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:54 Download gff for BS05662.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8229382..8229433 700..751 100 -> Minus
3L 8229499..8229757 441..699 100 -> Minus
3L 8229824..8229898 366..440 100 -> Minus
3L 8229953..8230052 266..365 100 -> Minus
3L 8230116..8230203 178..265 100 -> Minus
3L 8230261..8230423 13..177 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:53 Download gff for BS05662.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8222482..8222533 700..751 100 -> Minus
arm_3L 8222599..8222857 441..699 100 -> Minus
arm_3L 8222924..8222998 366..440 100 -> Minus
arm_3L 8223053..8223152 266..365 100 -> Minus
arm_3L 8223216..8223303 178..265 100 -> Minus
arm_3L 8223361..8223523 13..177 98   Minus

BS05662.complete Sequence

767 bp (767 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635202

> BS05662.complete
GAAGTTATCAGTCGACATGGTGTACACCGGTTACGTAAGCAACGGATTGC
AGAATGCTGAGGAAACTGCATGGGTGCCGTATGGAGATCCCAATGACTGG
TCACATGGTCTGGCAGTTTATGATGGTTTGGAACTGATGAGCGGCAATGA
GGAGGAGTTGCAGCCCTCATTGAACCGGGTGATGAAAAACATCGACTACG
ACCTGGCCATGAAGCATCCATTGGAGCATACCTGGACTTTGTGGCACTTG
GAGAACGATCGTACCAAGCGCTGGGCCGAAATGCTCGTCGATGTGACCAG
CTTCAACACCGTTGAGGACTTCTTCAGTGTGTACTACTTTGTGAAGCCGC
CATCGGATCTGAAGATATTCAATGACTACATGGTCTTCAAGAAAAATATT
CGTCCCATGTGGGAGGATGACACCAATAAGAACGGTGGTCGTTGGATACT
GCTCCTGGACAAGGCCTCCAGGACCTATATAGATAAGATGTGGCACGATT
TGCTTTTGTGCATGATTGGCGAGTGCTTCCAGCACTCGGACGAGATATGT
GGAGTGGTCATCAATGTGCGCAACAAGGCTAATAAGCTATCCCTTTGGAC
GAAGGACTCTCGCAATGTAGAGGCTATCCTGTCCATTGGCAGGCAGATAA
AGGAGCTGCTGCATCTGGGCATTATGGAAATCCAGTACCAGGTGCACAAG
GATGCCATGGTGAACCATGGACCCAATGTCAATGCCATCTACACATTGTA
GAAGCTTTCTAGACCAT

BS05662.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-3-RA 735 CG8023-PA 1..735 17..751 3675 100 Plus
eIF-4E-RI 780 CG4035-PI 258..563 232..537 210 71.2 Plus
eIF-4E-RH 780 CG4035-PH 258..563 232..537 210 71.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-3-RA 1040 CG8023-RA 159..893 17..751 3675 100 Plus
eIF-4E-RI 1793 CG4035-RI 1019..1324 232..537 210 71.2 Plus
eIF-4E-RH 1492 CG4035-RH 718..1023 232..537 210 71.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8229498..8229757 68..327 1300 100 Plus
3L 28110227 3L 8230261..8230421 591..751 805 100 Plus
3L 28110227 3L 8229952..8230052 402..502 505 100 Plus
3L 28110227 3L 8230115..8230203 502..590 445 100 Plus
3L 28110227 3L 8229821..8229898 325..402 390 100 Plus
3L 28110227 3L 8229382..8229433 17..68 260 100 Plus
3L 28110227 3L 7895198..7895260 212..274 180 85.7 Plus
Blast to na_te.dros performed on 2014-11-27 20:45:05 has no hits.

BS05662.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:33 Download gff for BS05662.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:17 Download gff for BS05662.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 150..886 17..755 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:07 Download gff for BS05662.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 159..893 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:34 Download gff for BS05662.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 150..886 17..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:30 Download gff for BS05662.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 159..893 17..751 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:30 Download gff for BS05662.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8229382..8229433 17..68 100 -> Plus
3L 8229499..8229757 69..327 100 -> Plus
3L 8229824..8229898 328..402 100 -> Plus
3L 8229953..8230052 403..502 100 -> Plus
3L 8230116..8230203 503..590 100 -> Plus
3L 8230261..8230421 591..751 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:07 Download gff for BS05662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8223053..8223152 403..502 100 -> Plus
arm_3L 8223216..8223303 503..590 100 -> Plus
arm_3L 8222482..8222533 17..68 100 -> Plus
arm_3L 8222599..8222857 69..327 100 -> Plus
arm_3L 8222924..8222998 328..402 100 -> Plus
arm_3L 8223361..8223521 591..751 100   Plus

BS05662.pep Sequence

Translation from 16 to 750

> BS05662.pep
MVYTGYVSNGLQNAEETAWVPYGDPNDWSHGLAVYDGLELMSGNEEELQP
SLNRVMKNIDYDLAMKHPLEHTWTLWHLENDRTKRWAEMLVDVTSFNTVE
DFFSVYYFVKPPSDLKIFNDYMVFKKNIRPMWEDDTNKNGGRWILLLDKA
SRTYIDKMWHDLLLCMIGECFQHSDEICGVVINVRNKANKLSLWTKDSRN
VEAILSIGRQIKELLHLGIMEIQYQVHKDAMVNHGPNVNAIYTL*

BS05662.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-3-PA 244 CG8023-PA 1..244 1..244 1329 100 Plus
eIF-4E-PC 248 CG4035-PC 69..248 66..244 614 58.3 Plus
eIF-4E-PI 259 CG4035-PI 80..259 66..244 614 58.3 Plus
eIF-4E-PH 259 CG4035-PH 80..259 66..244 614 58.3 Plus
eIF-4E-PD 259 CG4035-PD 80..259 66..244 614 58.3 Plus