Clone Sequence Records
BS05663.3prime Sequence
923 bp (769 high quality bases) assembled on 2005-12-02
> BS05663.3prime
ATGGTCTAGAAAGCTTCTATTCCTTGCTGGGCTTATCCCCAGATCCCTCG
GCGGCCGCCACCAGAGAAGACGACGATGTGGATGGACGTAGTACCACGCT
GTTGTCGCTGCTCTCACTGCTCGAGTCGCCCACATTCTGTTCGATGCTAA
GAGATTCGGCGGGCGGAGGAGGAGCAGTGGCAACAGGAACTGGTGGCACC
AAGTTTGGAGTCCCGATGCAGATGCGTTTGGATGGCGGCGGAGCCACATG
ACCCAGTCGTGCGTTGGACAGAGTTGTGCCAGAGGAGACGGGCTCGAATG
TCATCAGTTCTCCGAAGTAGACGTGCTGGATCACGGGAAACTTGGAGAGA
ATCTCCTTTTGGTACATCTTAACTAGTCCCGCGTTGATCTTGGCCCATGT
TGGCACATCCGTGATGCTCCACAGCTGGTTAGAGTGCTCGCCAAAGTGTC
CAGTCTTGACCTTGCAGATGTAGTCGATGCAACTGATGAACATGAAGTGA
TCCTTGTACTCGGTGATTATCGCCTCGTCCACGAACTTCGAGGGATCAAA
GGGACTCTTAACCGCCAGCTGTGCACTGCCCCAGATGAAGGGCACGAACT
GGAAATCGTCCAGCGACCAGACTCCTTGGCTCCCAGCGGGTTCCATGTTG
TATGTTCGCTGCAGCTGCCTGGCGAGCTCAAGGTACCGATTGAAGAGTCT
CAGCGCAGCACTCACGATGTCCCTTTCCTGCAGGATCTCCGCCTTGAACA
GGGAGCACAGGAAGAAGAGGAAGGACAGCTCGTGGCCGGTGCCGTAGTCG
ATCCTGGTGGCATTGCCGAAAGATTCAGTGAGATACTGCCCCAGCTCCAC
CTGGTATCGCTTCTTGTCGTCTGGCAACAGCTGTTCTAGGAGTTCGGGCA
ACAATTCCCGCATTGCCTGCGCC
BS05663.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3289-PA | 1197 | Ptpa-RA | 291..1197 | 923..17 | 4535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptpa-RA | 1393 | CG3289-RA | 388..1295 | 923..16 | 4540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3377444..3377809 | 923..558 | 1815 | 99.7 | Minus |
2L | 23513712 | 2L | 3378154..3378492 | 354..16 | 1695 | 100 | Minus |
2L | 23513712 | 2L | 3377861..3378070 | 562..353 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:57:35 has no hits.
BS05663.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:18 Download gff for
BS05663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-PA | 291..1197 | 17..923 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:26 Download gff for
BS05663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3289-PA | 291..1197 | 17..923 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:13 Download gff for
BS05663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 388..1297 | 12..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:59 Download gff for
BS05663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 388..1297 | 12..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:59 Download gff for
BS05663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3378156..3378494 | 12..352 | 99 | | Minus |
2L | 3377444..3377805 | 562..923 | 100 | -> | Minus |
2L | 3377862..3378070 | 353..561 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:13 Download gff for
BS05663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3377444..3377805 | 562..923 | 100 | -> | Minus |
arm_2L | 3377862..3378070 | 353..561 | 100 | -> | Minus |
arm_2L | 3378156..3378494 | 12..352 | 99 | | Minus |
BS05663.5prime Sequence
886 bp (823 high quality bases) assembled on 2005-12-02
> BS05663.5prime
GAAGTTATCAGTCGACATGGCGAGTGGCATTAACCAAGCAGCAGGTAAAC
TGCCGGCAATTGCGAAGAAGGTGCAAAATCTCGGCGATATGGGCGTTTGG
CAAAAATCCCGCGCCTTCCACGATTTAATTGGATATATAAATGGCACCAG
TTCGGCCATTCAGGGCATTAAAACCACAGACGAGATTTTCGAGTCGGAAA
TGCTCAAGAAGCTGCTGCGGCTATTCGATGCACTGGAGAAATTGGTAGAG
CAAAATCCTCCATTGGAGCAGCCGCAGCGGTTCGGAAACAAAGCCTACAG
GGATTGGGCGCAGGCAATGCGGGAATTGTTGCCCGAACTCCTAGAACAGC
TGTTGCCAGACGACAAGAAGCGATACCAGGTGGAGCTGGGGCAGTATCTC
ACTGAATCTTTCGGCAATGCCACCAGGATCGACTACGGCACCGGCCACGA
GCTGTCCTTCCTCTTCTTCCTGTGCTCCCTGTTCAAGGCGGAGATCCTGC
AGGAAAGGGACATCGTGAGTGCTGCGCTGAGACTCTTCAATCGGTACCTT
GAGCTCGCCAGGCAGCTGCAGCGAACATACAACATGGAACCCGCTGGGAG
CCAAGGAGTCTGGTCGCTGGACGATTTCCAGTTCGTGCCCTTCATCTGGG
GCAGTGCACAGCTGGCGGTTAAGAGTCCCTTTGATCCCTCGAAGTTCGTG
GACGAGGCGATAATCACCGAGTACAAGGATCACTTCATGTTCATCAGTTG
CATCGACTACATCTGCAAGGTCAAGACTGGACACTTTGGCGAGCACTCTA
ACCAGCTGTGGAGCATCACGGATGTGCCCACATGGGCCAAGAATCACGCG
GGACTAGTTAAGATGTACCAAAAGGAGATTCTCTCC
BS05663.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3289-PA | 1197 | Ptpa-RA | 1..826 | 17..842 | 4105 | 99.8 | Plus |
CG3289-PA | 1197 | Ptpa-RA | 830..870 | 846..886 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:18:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptpa-RA | 1393 | CG3289-RA | 98..967 | 17..886 | 4290 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3377178..3377809 | 41..672 | 3145 | 99.8 | Plus |
2L | 23513712 | 2L | 3377861..3378070 | 668..877 | 990 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:18:24 has no hits.
BS05663.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:19 Download gff for
BS05663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:28 Download gff for
BS05663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3289-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:37:11 Download gff for
BS05663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 98..967 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:37:41 Download gff for
BS05663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 98..967 | 17..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:37:41 Download gff for
BS05663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3377099..3377126 | 17..44 | 100 | -> | Plus |
2L | 3377182..3377805 | 45..668 | 100 | -> | Plus |
2L | 3377862..3378077 | 669..886 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:37:11 Download gff for
BS05663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3377099..3377126 | 17..44 | 100 | -> | Plus |
arm_2L | 3377182..3377805 | 45..668 | 100 | -> | Plus |
arm_2L | 3377862..3378077 | 669..886 | 96 | | Plus |
BS05663.complete Sequence
1229 bp (1229 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635203
> BS05663.complete
GAAGTTATCAGTCGACATGGCGAGTGGCATTAACCAAGCAGCAGGTAAAC
TGCCGGCAATTGCGAAGAAGGTGCAAAATCTCGGCGATATGGGCGTTTGG
CAAAAATCCCGCGCCTTCCACGATTTAATTGGATATATAAATGGCACCAG
TTCGGCCATTCAGGGCATTAAAACCACAGACGAGATTTTCGAGTCGGAAA
TGCTCAAGAAGCTGCTGCGGCTATTCGATGCACTGGAGAAATTGGTAGAG
CAAAATCCTCCATTGGAGCAGCCGCAGCGGTTCGGAAACAAAGCCTACAG
GGATTGGGCGCAGGCAATGCGGGAATTGTTGCCCGAACTCCTAGAACAGC
TGTTGCCAGACGACAAGAAGCGATACCAGGTGGAGCTGGGGCAGTATCTC
ACTGAATCTTTCGGCAATGCCACCAGGATCGACTACGGCACCGGCCACGA
GCTGTCCTTCCTCTTCTTCCTGTGCTCCCTGTTCAAGGCGGAGATCCTGC
AGGAAAGGGACATCGTGAGTGCTGCGCTGAGACTCTTCAATCGGTACCTT
GAGCTCGCCAGGCAGCTGCAGCGAACATACAACATGGAACCCGCTGGGAG
CCAAGGAGTCTGGTCGCTGGACGATTTCCAGTTCGTGCCCTTCATCTGGG
GCAGTGCACAGCTGGCGGTTAAGAGTCCCTTTGATCCCTCGAAGTTCGTG
GACGAGGCGATAATCACCGAGTACAAGGATCACTTCATGTTCATCAGTTG
CATCGACTACATCTGCAAGGTCAAGACTGGACACTTTGGCGAGCACTCTA
ACCAGCTGTGGAGCATCACGGATGTGCCAACATGGGCCAAGATCAACGCG
GGACTAGTTAAGATGTACCAAAAGGAGATTCTCTCCAAGTTTCCCGTGAT
CCAGCACGTCTACTTCGGAGAACTGATGACATTCGAGCCCGTCTCCTCTG
GCACAACTCTGTCCAACGCACGACTGGGTCATGTGGCTCCGCCGCCATCC
AAACGCATCTGCATCGGGACTCCAAACTTGGTGCCACCAGTTCCTGTTGC
CACTGCTCCTCCTCCGCCCGCCGAATCTCTTAGCATCGAACAGAATGTGG
GCGACTCGAGCAGTGAGAGCAGCGACAACAGCGTGGTACTACGTCCATCC
ACATCGTCGTCTTCTCTGGTGGCGGCCGCCGAGGGATCTGGGGATAAGCC
CAGCAAGGAATAGAAGCTTTCTAGACCAT
BS05663.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptpa-RA | 1197 | CG3289-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptpa-RA | 1393 | CG3289-RA | 98..1295 | 17..1214 | 5990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3377178..3377809 | 41..672 | 3145 | 99.8 | Plus |
2L | 23513712 | 2L | 3378154..3378492 | 876..1214 | 1695 | 100 | Plus |
2L | 23513712 | 2L | 3377861..3378070 | 668..877 | 1050 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:53:27 has no hits.
BS05663.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:34 Download gff for
BS05663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 1..1197 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:19 Download gff for
BS05663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 92..1291 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:43 Download gff for
BS05663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 98..1294 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:35 Download gff for
BS05663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 92..1291 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:29 Download gff for
BS05663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 98..1294 | 17..1213 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:29 Download gff for
BS05663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3377099..3377126 | 17..44 | 100 | -> | Plus |
2L | 3377182..3377805 | 45..668 | 100 | -> | Plus |
2L | 3377862..3378070 | 669..877 | 100 | -> | Plus |
2L | 3378156..3378491 | 878..1213 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:43 Download gff for
BS05663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3377099..3377126 | 17..44 | 100 | -> | Plus |
arm_2L | 3377182..3377805 | 45..668 | 100 | -> | Plus |
arm_2L | 3377862..3378070 | 669..877 | 100 | -> | Plus |
arm_2L | 3378156..3378491 | 878..1213 | 100 | | Plus |
BS05663.pep Sequence
Translation from 16 to 1212
> BS05663.pep
MASGINQAAGKLPAIAKKVQNLGDMGVWQKSRAFHDLIGYINGTSSAIQG
IKTTDEIFESEMLKKLLRLFDALEKLVEQNPPLEQPQRFGNKAYRDWAQA
MRELLPELLEQLLPDDKKRYQVELGQYLTESFGNATRIDYGTGHELSFLF
FLCSLFKAEILQERDIVSAALRLFNRYLELARQLQRTYNMEPAGSQGVWS
LDDFQFVPFIWGSAQLAVKSPFDPSKFVDEAIITEYKDHFMFISCIDYIC
KVKTGHFGEHSNQLWSITDVPTWAKINAGLVKMYQKEILSKFPVIQHVYF
GELMTFEPVSSGTTLSNARLGHVAPPPSKRICIGTPNLVPPVPVATAPPP
PAESLSIEQNVGDSSSESSDNSVVLRPSTSSSSLVAAAEGSGDKPSKE*
BS05663.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptpa-PA | 398 | CG3289-PA | 1..398 | 1..398 | 2063 | 100 | Plus |
CG2104-PB | 424 | CG2104-PB | 26..338 | 18..325 | 689 | 43.8 | Plus |
CG2104-PA | 424 | CG2104-PA | 26..338 | 18..325 | 689 | 43.8 | Plus |
CG8509-PA | 432 | CG8509-PA | 29..338 | 17..321 | 577 | 39.7 | Plus |