Clone BS05663 Report

Search the DGRC for BS05663

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptPtpa-RA
Protein status:BS05663.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05663.3prime Sequence

923 bp (769 high quality bases) assembled on 2005-12-02

> BS05663.3prime
ATGGTCTAGAAAGCTTCTATTCCTTGCTGGGCTTATCCCCAGATCCCTCG
GCGGCCGCCACCAGAGAAGACGACGATGTGGATGGACGTAGTACCACGCT
GTTGTCGCTGCTCTCACTGCTCGAGTCGCCCACATTCTGTTCGATGCTAA
GAGATTCGGCGGGCGGAGGAGGAGCAGTGGCAACAGGAACTGGTGGCACC
AAGTTTGGAGTCCCGATGCAGATGCGTTTGGATGGCGGCGGAGCCACATG
ACCCAGTCGTGCGTTGGACAGAGTTGTGCCAGAGGAGACGGGCTCGAATG
TCATCAGTTCTCCGAAGTAGACGTGCTGGATCACGGGAAACTTGGAGAGA
ATCTCCTTTTGGTACATCTTAACTAGTCCCGCGTTGATCTTGGCCCATGT
TGGCACATCCGTGATGCTCCACAGCTGGTTAGAGTGCTCGCCAAAGTGTC
CAGTCTTGACCTTGCAGATGTAGTCGATGCAACTGATGAACATGAAGTGA
TCCTTGTACTCGGTGATTATCGCCTCGTCCACGAACTTCGAGGGATCAAA
GGGACTCTTAACCGCCAGCTGTGCACTGCCCCAGATGAAGGGCACGAACT
GGAAATCGTCCAGCGACCAGACTCCTTGGCTCCCAGCGGGTTCCATGTTG
TATGTTCGCTGCAGCTGCCTGGCGAGCTCAAGGTACCGATTGAAGAGTCT
CAGCGCAGCACTCACGATGTCCCTTTCCTGCAGGATCTCCGCCTTGAACA
GGGAGCACAGGAAGAAGAGGAAGGACAGCTCGTGGCCGGTGCCGTAGTCG
ATCCTGGTGGCATTGCCGAAAGATTCAGTGAGATACTGCCCCAGCTCCAC
CTGGTATCGCTTCTTGTCGTCTGGCAACAGCTGTTCTAGGAGTTCGGGCA
ACAATTCCCGCATTGCCTGCGCC

BS05663.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3289-PA 1197 Ptpa-RA 291..1197 923..17 4535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Ptpa-RA 1393 CG3289-RA 388..1295 923..16 4540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3377444..3377809 923..558 1815 99.7 Minus
2L 23513712 2L 3378154..3378492 354..16 1695 100 Minus
2L 23513712 2L 3377861..3378070 562..353 1050 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:57:35 has no hits.

BS05663.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:18 Download gff for BS05663.3prime
Subject Subject Range Query Range Percent Splice Strand
Ptpa-PA 291..1197 17..923 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:26 Download gff for BS05663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3289-PA 291..1197 17..923 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:13 Download gff for BS05663.3prime
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 388..1297 12..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:59 Download gff for BS05663.3prime
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 388..1297 12..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:59 Download gff for BS05663.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3378156..3378494 12..352 99   Minus
2L 3377444..3377805 562..923 100 -> Minus
2L 3377862..3378070 353..561 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:13 Download gff for BS05663.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3377444..3377805 562..923 100 -> Minus
arm_2L 3377862..3378070 353..561 100 -> Minus
arm_2L 3378156..3378494 12..352 99   Minus

BS05663.5prime Sequence

886 bp (823 high quality bases) assembled on 2005-12-02

> BS05663.5prime
GAAGTTATCAGTCGACATGGCGAGTGGCATTAACCAAGCAGCAGGTAAAC
TGCCGGCAATTGCGAAGAAGGTGCAAAATCTCGGCGATATGGGCGTTTGG
CAAAAATCCCGCGCCTTCCACGATTTAATTGGATATATAAATGGCACCAG
TTCGGCCATTCAGGGCATTAAAACCACAGACGAGATTTTCGAGTCGGAAA
TGCTCAAGAAGCTGCTGCGGCTATTCGATGCACTGGAGAAATTGGTAGAG
CAAAATCCTCCATTGGAGCAGCCGCAGCGGTTCGGAAACAAAGCCTACAG
GGATTGGGCGCAGGCAATGCGGGAATTGTTGCCCGAACTCCTAGAACAGC
TGTTGCCAGACGACAAGAAGCGATACCAGGTGGAGCTGGGGCAGTATCTC
ACTGAATCTTTCGGCAATGCCACCAGGATCGACTACGGCACCGGCCACGA
GCTGTCCTTCCTCTTCTTCCTGTGCTCCCTGTTCAAGGCGGAGATCCTGC
AGGAAAGGGACATCGTGAGTGCTGCGCTGAGACTCTTCAATCGGTACCTT
GAGCTCGCCAGGCAGCTGCAGCGAACATACAACATGGAACCCGCTGGGAG
CCAAGGAGTCTGGTCGCTGGACGATTTCCAGTTCGTGCCCTTCATCTGGG
GCAGTGCACAGCTGGCGGTTAAGAGTCCCTTTGATCCCTCGAAGTTCGTG
GACGAGGCGATAATCACCGAGTACAAGGATCACTTCATGTTCATCAGTTG
CATCGACTACATCTGCAAGGTCAAGACTGGACACTTTGGCGAGCACTCTA
ACCAGCTGTGGAGCATCACGGATGTGCCCACATGGGCCAAGAATCACGCG
GGACTAGTTAAGATGTACCAAAAGGAGATTCTCTCC

BS05663.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3289-PA 1197 Ptpa-RA 1..826 17..842 4105 99.8 Plus
CG3289-PA 1197 Ptpa-RA 830..870 846..886 205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
Ptpa-RA 1393 CG3289-RA 98..967 17..886 4290 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3377178..3377809 41..672 3145 99.8 Plus
2L 23513712 2L 3377861..3378070 668..877 990 98.1 Plus
Blast to na_te.dros performed on 2015-02-12 20:18:24 has no hits.

BS05663.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:19 Download gff for BS05663.5prime
Subject Subject Range Query Range Percent Splice Strand
Ptpa-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:28 Download gff for BS05663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3289-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:37:11 Download gff for BS05663.5prime
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 98..967 17..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:37:41 Download gff for BS05663.5prime
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 98..967 17..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:37:41 Download gff for BS05663.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3377099..3377126 17..44 100 -> Plus
2L 3377182..3377805 45..668 100 -> Plus
2L 3377862..3378077 669..886 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:37:11 Download gff for BS05663.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3377099..3377126 17..44 100 -> Plus
arm_2L 3377182..3377805 45..668 100 -> Plus
arm_2L 3377862..3378077 669..886 96   Plus

BS05663.complete Sequence

1229 bp (1229 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635203

> BS05663.complete
GAAGTTATCAGTCGACATGGCGAGTGGCATTAACCAAGCAGCAGGTAAAC
TGCCGGCAATTGCGAAGAAGGTGCAAAATCTCGGCGATATGGGCGTTTGG
CAAAAATCCCGCGCCTTCCACGATTTAATTGGATATATAAATGGCACCAG
TTCGGCCATTCAGGGCATTAAAACCACAGACGAGATTTTCGAGTCGGAAA
TGCTCAAGAAGCTGCTGCGGCTATTCGATGCACTGGAGAAATTGGTAGAG
CAAAATCCTCCATTGGAGCAGCCGCAGCGGTTCGGAAACAAAGCCTACAG
GGATTGGGCGCAGGCAATGCGGGAATTGTTGCCCGAACTCCTAGAACAGC
TGTTGCCAGACGACAAGAAGCGATACCAGGTGGAGCTGGGGCAGTATCTC
ACTGAATCTTTCGGCAATGCCACCAGGATCGACTACGGCACCGGCCACGA
GCTGTCCTTCCTCTTCTTCCTGTGCTCCCTGTTCAAGGCGGAGATCCTGC
AGGAAAGGGACATCGTGAGTGCTGCGCTGAGACTCTTCAATCGGTACCTT
GAGCTCGCCAGGCAGCTGCAGCGAACATACAACATGGAACCCGCTGGGAG
CCAAGGAGTCTGGTCGCTGGACGATTTCCAGTTCGTGCCCTTCATCTGGG
GCAGTGCACAGCTGGCGGTTAAGAGTCCCTTTGATCCCTCGAAGTTCGTG
GACGAGGCGATAATCACCGAGTACAAGGATCACTTCATGTTCATCAGTTG
CATCGACTACATCTGCAAGGTCAAGACTGGACACTTTGGCGAGCACTCTA
ACCAGCTGTGGAGCATCACGGATGTGCCAACATGGGCCAAGATCAACGCG
GGACTAGTTAAGATGTACCAAAAGGAGATTCTCTCCAAGTTTCCCGTGAT
CCAGCACGTCTACTTCGGAGAACTGATGACATTCGAGCCCGTCTCCTCTG
GCACAACTCTGTCCAACGCACGACTGGGTCATGTGGCTCCGCCGCCATCC
AAACGCATCTGCATCGGGACTCCAAACTTGGTGCCACCAGTTCCTGTTGC
CACTGCTCCTCCTCCGCCCGCCGAATCTCTTAGCATCGAACAGAATGTGG
GCGACTCGAGCAGTGAGAGCAGCGACAACAGCGTGGTACTACGTCCATCC
ACATCGTCGTCTTCTCTGGTGGCGGCCGCCGAGGGATCTGGGGATAAGCC
CAGCAAGGAATAGAAGCTTTCTAGACCAT

BS05663.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Ptpa-RA 1197 CG3289-PA 1..1197 17..1213 5985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ptpa-RA 1393 CG3289-RA 98..1295 17..1214 5990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3377178..3377809 41..672 3145 99.8 Plus
2L 23513712 2L 3378154..3378492 876..1214 1695 100 Plus
2L 23513712 2L 3377861..3378070 668..877 1050 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:53:27 has no hits.

BS05663.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:34 Download gff for BS05663.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 1..1197 17..1213 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:19 Download gff for BS05663.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 92..1291 17..1218 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:43 Download gff for BS05663.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 98..1294 17..1213 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:35 Download gff for BS05663.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 92..1291 17..1218 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:29 Download gff for BS05663.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 98..1294 17..1213 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:29 Download gff for BS05663.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3377099..3377126 17..44 100 -> Plus
2L 3377182..3377805 45..668 100 -> Plus
2L 3377862..3378070 669..877 100 -> Plus
2L 3378156..3378491 878..1213 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:43 Download gff for BS05663.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3377099..3377126 17..44 100 -> Plus
arm_2L 3377182..3377805 45..668 100 -> Plus
arm_2L 3377862..3378070 669..877 100 -> Plus
arm_2L 3378156..3378491 878..1213 100   Plus

BS05663.pep Sequence

Translation from 16 to 1212

> BS05663.pep
MASGINQAAGKLPAIAKKVQNLGDMGVWQKSRAFHDLIGYINGTSSAIQG
IKTTDEIFESEMLKKLLRLFDALEKLVEQNPPLEQPQRFGNKAYRDWAQA
MRELLPELLEQLLPDDKKRYQVELGQYLTESFGNATRIDYGTGHELSFLF
FLCSLFKAEILQERDIVSAALRLFNRYLELARQLQRTYNMEPAGSQGVWS
LDDFQFVPFIWGSAQLAVKSPFDPSKFVDEAIITEYKDHFMFISCIDYIC
KVKTGHFGEHSNQLWSITDVPTWAKINAGLVKMYQKEILSKFPVIQHVYF
GELMTFEPVSSGTTLSNARLGHVAPPPSKRICIGTPNLVPPVPVATAPPP
PAESLSIEQNVGDSSSESSDNSVVLRPSTSSSSLVAAAEGSGDKPSKE*

BS05663.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
Ptpa-PA 398 CG3289-PA 1..398 1..398 2063 100 Plus
CG2104-PB 424 CG2104-PB 26..338 18..325 689 43.8 Plus
CG2104-PA 424 CG2104-PA 26..338 18..325 689 43.8 Plus
CG8509-PA 432 CG8509-PA 29..338 17..321 577 39.7 Plus