Clone Sequence Records
BS05664.3prime Sequence
773 bp (771 high quality bases) assembled on 2005-12-02
> BS05664.3prime
ATGGTCTAGAAAGCTTCTAGAACTGCTCATCCCTGTAATCCACATGATCG
CCGGACTTGAACTTGAATGCTTCCAGGACTTTGATGAATCGCTCCGTCGT
TTGGGCGGGAGTCAGCATGGTCTTGGACTCCCTTTGCTCTCGAAACATGG
CGACCACGGCGGGATCGTGGGCCTCTCGCTGAACCTGGACGGTCATCTGT
GTGTCTATGACGCCGGGCGCGTAGTTCAACACCAGGGTGTCCTCGGCGGA
CTCCTCGGTGGCCAGCACTCGGAAGTACATCTCACGGGCTGCCTTCACCG
TGCAATAGTGTGCCATCGAGGATATAGGTGCAATGGCTGCCAAGGTGCTG
AGATTAACCACCAACTTTGGGATTCCCTTGAAGACGCGCATAAACTCGCA
GTTTAGCGAAATGGCCGAGAAGACATTGGAGTGGTAGTAGCGCTGTAGGA
AGTCGGTATCTCCGATTTCTTTGGCCCTCTTTGACGTATCGCCCACTGTG
CCGGCATTATGAATGACTATGGCTCGCTCGAAATTGTTCTTTCCACCGGA
TGCCTCCAGAATCTTGGTAAAGTCCTCCGTTTTGGCCGTTTCCAGCTCCA
GCGAATAGGTTTGCACGGATAGATCTGGCACTGTGGCGACAATCTCTGCC
TTAGACTCCTGCAAAAGGGTTTGATTGCGTCCCAGAAGCGTCACCATGGA
ACCCTCGGCTTTGATCCGTTTGGCTAACTGCTGGGCGAACTCACGGCCAA
TTCCACGTGATGCACCGGTCACC
BS05664.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12117-PA | 786 | Sptr-RA | 30..786 | 773..17 | 3785 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sptr-RA | 1143 | CG12117-RA | 162..918 | 773..17 | 3785 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8463521..8464277 | 17..773 | 3785 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 17:11:22 has no hits.
BS05664.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:20 Download gff for
BS05664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-PA | 30..786 | 17..773 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:29 Download gff for
BS05664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12117-PA | 30..786 | 17..773 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:17 Download gff for
BS05664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 162..924 | 11..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:53 Download gff for
BS05664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 162..924 | 11..773 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:53 Download gff for
BS05664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8463515..8464277 | 11..773 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:17 Download gff for
BS05664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8357548..8358310 | 11..773 | 99 | | Plus |
BS05664.5prime Sequence
816 bp (722 high quality bases) assembled on 2005-12-02
> BS05664.5prime
GAAGTTATCAGTCGACATGGACCTGAAACAGCGCACATATCTCCTGGTGA
CCGGTGCATCACGTGGAATTGGCCGTGAGTTCGCCCAGCAGTTAGCCAAA
CGGATCAAAGCCGAGGGTTCCATGGTGACGCTTCTGGGACGCAATCAAAC
CCTTTTGCAGGAGTCTAAGGCAGAGATTGTCGCCACAGTGCCAGATCTAT
CCGTGCAAACCTATTCGCTGGAGCTGGAAACGGCCAAAACGGAGGACTTT
ACCAAGATTCTGGAGGCATCCGGTGGAAAGAACAATTTCGAGCGAGCCAT
AGTCATTCATAATGCCGGCACAGTGGGCGATACGTCAAAGAGGGCCAAAG
AAATCGGAGATACCGACTTCCTACAGCGCTACTACCACTCCAATGTCTTC
TCGGCCATTTCGCTAAACTGCGAGTTTATGCGCGTCTTCAAGGGAATCCC
AAAGTTGGTGGTTAATCTCAGCACCTTGGCAGCCATTGCACCTATATCCT
CGATGGCACACTATTGCACGGTGAAGGCAGCCCGTGAGATGTACTTCCGA
GTGCTGGCCACCGAGGAGTCCGCCGAGGACACCCTGGTGTTGAACTACGC
GCCCGGCGTCATAGACACACAGATGACCGTCCAGGTTCAGCGAGAGGCCC
ACGATCCCGCCGTGGTCGCCATGTTTCGAGAGCAAAGGGAGTCCAAGACC
ATGCTGACTCCCGCCCAAACGACGGAGCGATTCATCAAAGTCCTGGAAGC
ATTCAAGTTCAAGTCCGGCGATCATGTGGATTACAGGGATGAGCAGTTCT
AGAAGCTTTCTAGACC
BS05664.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12117-PA | 786 | Sptr-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sptr-RA | 1143 | CG12117-RA | 132..918 | 16..802 | 3935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8463521..8464307 | 802..16 | 3935 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:52:39 has no hits.
BS05664.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:21 Download gff for
BS05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:30 Download gff for
BS05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12117-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:43:29 Download gff for
BS05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 123..924 | 8..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:50:43 Download gff for
BS05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 123..924 | 8..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:50:43 Download gff for
BS05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8463515..8464316 | 8..808 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:43:29 Download gff for
BS05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8357548..8358349 | 8..808 | 99 | | Minus |
BS05664.complete Sequence
818 bp (818 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635204
> BS05664.complete
GAAGTTATCAGTCGACATGGACCTGAAACAGCGCACATATCTCCTGGTGA
CCGGTGCATCACGTGGAATTGGCCGTGAGTTCGCCCAGCAGTTAGCCAAA
CGGATCAAAGCCGAGGGTTCCATGGTGACGCTTCTGGGACGCAATCAAAC
CCTTTTGCAGGAGTCTAAGGCAGAGATTGTCGCCACAGTGCCAGATCTAT
CCGTGCAAACCTATTCGCTGGAGCTGGAAACGGCCAAAACGGAGGACTTT
ACCAAGATTCTGGAGGCATCCGGTGGAAAGAACAATTTCGAGCGAGCCAT
AGTCATTCATAATGCCGGCACAGTGGGCGATACGTCAAAGAGGGCCAAAG
AAATCGGAGATACCGACTTCCTACAGCGCTACTACCACTCCAATGTCTTC
TCGGCCATTTCGCTAAACTGCGAGTTTATGCGCGTCTTCAAGGGAATCCC
AAAGTTGGTGGTTAATCTCAGCACCTTGGCAGCCATTGCACCTATATCCT
CGATGGCACACTATTGCACGGTGAAGGCAGCCCGTGAGATGTACTTCCGA
GTGCTGGCCACCGAGGAGTCCGCCGAGGACACCCTGGTGTTGAACTACGC
GCCCGGCGTCATAGACACACAGATGACCGTCCAGGTTCAGCGAGAGGCCC
ACGATCCCGCCGTGGTCGCCATGTTTCGAGAGCAAAGGGAGTCCAAGACC
ATGCTGACTCCCGCCCAAACGACGGAGCGATTCATCAAAGTCCTGGAAGC
ATTCAAGTTCAAGTCCGGCGATCATGTGGATTACAGGGATGAGCAGTTCT
AGAAGCTTTCTAGACCAT
BS05664.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sptr-RA | 786 | CG12117-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sptr-RA | 1143 | CG12117-RA | 132..918 | 16..802 | 3935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8463521..8464307 | 802..16 | 3935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:11:56 has no hits.
BS05664.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:36 Download gff for
BS05664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:20 Download gff for
BS05664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 682..1483 | 8..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:19 Download gff for
BS05664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 133..918 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:36 Download gff for
BS05664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 682..1483 | 8..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:39 Download gff for
BS05664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 133..918 | 17..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:39 Download gff for
BS05664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8463521..8464306 | 17..802 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:19 Download gff for
BS05664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8357554..8358339 | 17..802 | 100 | | Minus |
BS05664.pep Sequence
Translation from 16 to 801
> BS05664.pep
MDLKQRTYLLVTGASRGIGREFAQQLAKRIKAEGSMVTLLGRNQTLLQES
KAEIVATVPDLSVQTYSLELETAKTEDFTKILEASGGKNNFERAIVIHNA
GTVGDTSKRAKEIGDTDFLQRYYHSNVFSAISLNCEFMRVFKGIPKLVVN
LSTLAAIAPISSMAHYCTVKAAREMYFRVLATEESAEDTLVLNYAPGVID
TQMTVQVQREAHDPAVVAMFREQRESKTMLTPAQTTERFIKVLEAFKFKS
GDHVDYRDEQF*
BS05664.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sptr-PA | 261 | CG12117-PA | 1..261 | 1..261 | 1304 | 100 | Plus |
| CG12116-PA | 273 | CG12116-PA | 6..269 | 1..258 | 252 | 28 | Plus |
