Clone BS05665 Report

Search the DGRC for BS05665

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptSpn42Dd-RB
Protein status:BS05665.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05665.3prime Sequence

880 bp (808 high quality bases) assembled on 2005-12-02

> BS05665.3prime
ATGGTCTAGAAAGCTTTCAAGGGCTTACAACACGCCCCTGGAAATATATG
GTGTTCGCATCGCGAATGACGAAGGCAAAGGGATGATCGGCCATGAGGAA
CGTAGAAAATCCCGCTCGATTTGTGACGGCCACAGATGTGGCACCTGCGG
CCTCCGCTCCCTCCTCGTTCACCTCCAGAAACGCCTTGTGCGAGACCTGA
CTGACTTTGCCGCCTGACTTATCGGCGAACAAGCCGCTTAAGTCTGACTT
GTCGGTGAATAGCTCTCGGATGCCCAGCTTCTCTAAGGTCTCTTTGAGTT
CATCACGAAATTCGATTTTAAACTTGGGCAGCTTAAGATAGACCTCCTTG
GCAACCAGCGGCCTGGCGAAGCCAACGATCTTCTCTTCCAGGGCGCTCAA
GCCCTCCACTTCTCGGGGCAGAAAGATAGTCATGGACAGGTTGGAGTTAA
GGTACGGCAGCTCGATGACTTGGGCATCTAGATCGCGGAAGTAGTTAGCC
CTGAATGTTCCCATTTGCGCCATCATCTGGACGGGCACACTCTTGTTCGC
AGTTACTTGGAAGGTGGAGGCTCTGGTCTTAGCTGGGTCAAACTTCGACT
CCCACTGGCCCTTAAAGTAGATGGCGTTCACCAGCAAGGCCTTCACGTCG
GACGTCATGCTGCCGGGATCGATCATGCCCTTGATTTTACCACTGGTCTG
ATCCAGCACCCACTGGTTGATTCTCTCGGCCGCCACAGGGCCATTGGTCA
GACTAATGGACTCCGCCTCGGACTTGAAGGGTTCCCTCACAGCGAGGTTG
TAGTTCTGATTCAGGCTGTACTGGTCGTTGACGTAGATGCGATTCGCGAG
CTTTAGTATGGGTCCCTCCTCCTGTCCCTG

BS05665.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9456-PA 1119 Spn1-RA 256..1119 880..17 4320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Dd-RB 1195 CG9456-RB 306..1170 880..16 4325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6883856..6884458 880..278 3015 100 Minus
2R 25286936 2R 6884514..6884658 280..136 725 100 Minus
2R 25286936 2R 6884729..6884848 135..16 600 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:48:44 has no hits.

BS05665.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:22 Download gff for BS05665.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn1-PA 256..1119 17..880 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:31 Download gff for BS05665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9456-PA 256..1119 17..880 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:29:10 Download gff for BS05665.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 306..1170 16..880 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:43 Download gff for BS05665.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 306..1170 16..880 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:43 Download gff for BS05665.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6883856..6884458 278..880 100 -> Minus
2R 6884517..6884658 136..277 100 -> Minus
2R 6884729..6884848 16..135 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:29:10 Download gff for BS05665.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2771361..2771963 278..880 100 -> Minus
arm_2R 2772022..2772163 136..277 100 -> Minus
arm_2R 2772234..2772353 16..135 100   Minus

BS05665.5prime Sequence

866 bp (732 high quality bases) assembled on 2005-12-02

> BS05665.5prime
GAAGTTATCAGTCGACATGTATTACTTGTGCATTTTCCTGTGGGTCACTT
CAGTGGCATGTCAGACCTCCAAAGAGATCTACCAACTACTTTCCAAGAGC
CATACAAACCAGAACCTCGTCGTCTCGCCCGTCTCCATAGAGACCATCCT
TAGCATGGTCTTCATGGGCGCAGAAGGCTCGACGGCCAAGGAGCTGCAGA
GCGCCTTAGGTTTACCATCGGAGGACAAAGAGGCGGTGGCAGCCAGGTAC
GGTGCTCTCCTCAACGATCTTCAGGGACAGGAGGAGGGACCCATACTAAA
GCTCGCGAATCGCATCTACGTCAACGACCAGTACAGCCTGAATCAGAACT
ACAACCTCGCTGTGAGGGAACCCTTCAAGTCCGAGGCGGAGTCCATTAGT
CTGACCAATGGCCCTGTGGCGGCCGAGAGAATCAACCAGTGGGTGCTGGA
TCAGACCAGTGGTAAAATCAAGGGCATGATCGATCCCGGCAGCATGACGT
CCGACGTGAAGGCCTTGCTGGTGAACGCCATCTACTTTAAGGGCCAGTGG
GAGTCGAAGTTTGACCCAGCTAAGACCAGAGCCTCCACCTTCCAAGTAAC
TGCGAACAAGAGTGTGCCCGTCCAGATGATGGCGCAAATGGGAACATTCA
GGGCTAACTACTTCCGCGATCTAGATGCCCAAGTCATCGAGCTGCCGTAC
CTTAACTCCAACCTGTCCATGACTATCTTTCTGCCCCGAGAAGTGGAGGG
CTTGAGCGCCCTGGAAGAGAAGATCGTTGGCTTCGCCAGGCCGCTGGGTG
CCAAGGAGGTCTATCTTAAGCTGCCCAAGTTTAAAATCGAAATTCGTGAT
GAACTCAAAGAGACTT

BS05665.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9456-PA 1119 Spn1-RA 1..848 17..864 4190 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Dd-RB 1195 CG9456-RB 51..898 17..864 4210 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6883614..6884448 30..864 4145 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 14:58:54 has no hits.

BS05665.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:23 Download gff for BS05665.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn1-PA 1..850 17..866 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:32 Download gff for BS05665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9456-PA 1..850 17..866 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:04:02 Download gff for BS05665.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 46..900 11..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:48 Download gff for BS05665.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 46..900 11..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:48 Download gff for BS05665.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6883614..6884450 30..866 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:04:02 Download gff for BS05665.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2771119..2771955 30..866 99   Plus

BS05665.complete Sequence

1151 bp (1151 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635205

> BS05665.complete
GAAGTTATCAGTCGACATGTATTACTTGTGCATTTTCCTGTGGGTCACTT
CAGTGGCATGTCAGACCTCCAAAGAGATCTACCAACTACTTTCCAAGAGC
CATACAAACCAGAACCTCGTCGTCTCGCCCGTCTCCATAGAGACCATCCT
TAGCATGGTCTTCATGGGCGCAGAAGGCTCGACGGCCAAGGAGCTGCAGA
GCGCCTTAGGTTTACCATCGGAGGACAAAGAGGCGGTGGCAGCCAGGTAC
GGTGCTCTCCTCAACGATCTTCAGGGACAGGAGGAGGGACCCATACTAAA
GCTCGCGAATCGCATCTACGTCAACGACCAGTACAGCCTGAATCAGAACT
ACAACCTCGCTGTGAGGGAACCCTTCAAGTCCGAGGCGGAGTCCATTAGT
CTGACCAATGGCCCTGTGGCGGCCGAGAGAATCAACCAGTGGGTGCTGGA
TCAGACCAGTGGTAAAATCAAGGGCATGATCGATCCCGGCAGCATGACGT
CCGACGTGAAGGCCTTGCTGGTGAACGCCATCTACTTTAAGGGCCAGTGG
GAGTCGAAGTTTGACCCAGCTAAGACCAGAGCCTCCACCTTCCAAGTAAC
TGCGAACAAGAGTGTGCCCGTCCAGATGATGGCGCAAATGGGAACATTCA
GGGCTAACTACTTCCGCGATCTAGATGCCCAAGTCATCGAGCTGCCGTAC
CTTAACTCCAACCTGTCCATGACTATCTTTCTGCCCCGAGAAGTGGAGGG
CTTGAGCGCCCTGGAAGAGAAGATCGTTGGCTTCGCCAGGCCGCTGGTTG
CCAAGGAGGTCTATCTTAAGCTGCCCAAGTTTAAAATCGAATTTCGTGAT
GAACTCAAAGAGACCTTAGAGAAGCTGGGCATCCGAGAGCTATTCACCGA
CAAGTCAGACTTAAGCGGCTTGTTCGCCGATAAGTCAGGCGGCAAAGTCA
GTCAGGTCTCGCACAAGGCGTTTCTGGAGGTGAACGAGGAGGGAGCGGAG
GCCGCAGGTGCCACATCTGTGGCCGTCACAAATCGAGCGGGATTTTCTAC
GTTCCTCATGGCCGATCATCCCTTTGCCTTCGTCATTCGCGATGCGAACA
CCATATATTTCCAGGGGCGTGTTGTAAGCCCTTGAAAGCTTTCTAGACCA
T

BS05665.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Dd-RB 1119 CG9456-PB 1..1119 17..1135 5595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Dd-RB 1195 CG9456-RB 51..1170 17..1136 5600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6883614..6884458 30..874 4225 100 Plus
2R 25286936 2R 6884514..6884658 872..1016 725 100 Plus
2R 25286936 2R 6884729..6884848 1017..1136 600 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:02:04 has no hits.

BS05665.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:37 Download gff for BS05665.complete
Subject Subject Range Query Range Percent Splice Strand
Spn1-RA 1..1119 17..1135 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:22 Download gff for BS05665.complete
Subject Subject Range Query Range Percent Splice Strand
Spn1-RB 46..1170 11..1136 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:00 Download gff for BS05665.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 51..1168 17..1134 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:37 Download gff for BS05665.complete
Subject Subject Range Query Range Percent Splice Strand
Spn1-RA 323..1447 11..1136 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:18 Download gff for BS05665.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 51..1168 17..1134 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:18 Download gff for BS05665.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6883614..6884458 30..874 100 -> Plus
2R 6884517..6884658 875..1016 100 -> Plus
2R 6884729..6884846 1017..1134 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:00 Download gff for BS05665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2771119..2771963 30..874 100 -> Plus
arm_2R 2772022..2772163 875..1016 100 -> Plus
arm_2R 2772234..2772351 1017..1134 100   Plus

BS05665.pep Sequence

Translation from 16 to 1134

> BS05665.pep
MYYLCIFLWVTSVACQTSKEIYQLLSKSHTNQNLVVSPVSIETILSMVFM
GAEGSTAKELQSALGLPSEDKEAVAARYGALLNDLQGQEEGPILKLANRI
YVNDQYSLNQNYNLAVREPFKSEAESISLTNGPVAAERINQWVLDQTSGK
IKGMIDPGSMTSDVKALLVNAIYFKGQWESKFDPAKTRASTFQVTANKSV
PVQMMAQMGTFRANYFRDLDAQVIELPYLNSNLSMTIFLPREVEGLSALE
EKIVGFARPLVAKEVYLKLPKFKIEFRDELKETLEKLGIRELFTDKSDLS
GLFADKSGGKVSQVSHKAFLEVNEEGAEAAGATSVAVTNRAGFSTFLMAD
HPFAFVIRDANTIYFQGRVVSP*

BS05665.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Dd-PB 372 CG9456-PB 1..372 1..372 1871 100 Plus
Spn38F-PA 372 CG9334-PA 1..370 1..372 884 49.7 Plus
Spn38F-PB 370 CG9334-PB 1..368 1..372 881 49.5 Plus
Spn28F-PA 375 CG8137-PA 1..373 1..372 854 47.9 Plus
Spn28B-PB 378 CG6717-PB 1..376 1..372 755 42.6 Plus