Clone Sequence Records
BS05665.3prime Sequence
880 bp (808 high quality bases) assembled on 2005-12-02
> BS05665.3prime
ATGGTCTAGAAAGCTTTCAAGGGCTTACAACACGCCCCTGGAAATATATG
GTGTTCGCATCGCGAATGACGAAGGCAAAGGGATGATCGGCCATGAGGAA
CGTAGAAAATCCCGCTCGATTTGTGACGGCCACAGATGTGGCACCTGCGG
CCTCCGCTCCCTCCTCGTTCACCTCCAGAAACGCCTTGTGCGAGACCTGA
CTGACTTTGCCGCCTGACTTATCGGCGAACAAGCCGCTTAAGTCTGACTT
GTCGGTGAATAGCTCTCGGATGCCCAGCTTCTCTAAGGTCTCTTTGAGTT
CATCACGAAATTCGATTTTAAACTTGGGCAGCTTAAGATAGACCTCCTTG
GCAACCAGCGGCCTGGCGAAGCCAACGATCTTCTCTTCCAGGGCGCTCAA
GCCCTCCACTTCTCGGGGCAGAAAGATAGTCATGGACAGGTTGGAGTTAA
GGTACGGCAGCTCGATGACTTGGGCATCTAGATCGCGGAAGTAGTTAGCC
CTGAATGTTCCCATTTGCGCCATCATCTGGACGGGCACACTCTTGTTCGC
AGTTACTTGGAAGGTGGAGGCTCTGGTCTTAGCTGGGTCAAACTTCGACT
CCCACTGGCCCTTAAAGTAGATGGCGTTCACCAGCAAGGCCTTCACGTCG
GACGTCATGCTGCCGGGATCGATCATGCCCTTGATTTTACCACTGGTCTG
ATCCAGCACCCACTGGTTGATTCTCTCGGCCGCCACAGGGCCATTGGTCA
GACTAATGGACTCCGCCTCGGACTTGAAGGGTTCCCTCACAGCGAGGTTG
TAGTTCTGATTCAGGCTGTACTGGTCGTTGACGTAGATGCGATTCGCGAG
CTTTAGTATGGGTCCCTCCTCCTGTCCCTG
BS05665.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9456-PA | 1119 | Spn1-RA | 256..1119 | 880..17 | 4320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn42Dd-RB | 1195 | CG9456-RB | 306..1170 | 880..16 | 4325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6883856..6884458 | 880..278 | 3015 | 100 | Minus |
2R | 25286936 | 2R | 6884514..6884658 | 280..136 | 725 | 100 | Minus |
2R | 25286936 | 2R | 6884729..6884848 | 135..16 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:48:44 has no hits.
BS05665.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:22 Download gff for
BS05665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn1-PA | 256..1119 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:31 Download gff for
BS05665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9456-PA | 256..1119 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:29:10 Download gff for
BS05665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Dd-RB | 306..1170 | 16..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:43 Download gff for
BS05665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Dd-RB | 306..1170 | 16..880 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:43 Download gff for
BS05665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6883856..6884458 | 278..880 | 100 | -> | Minus |
2R | 6884517..6884658 | 136..277 | 100 | -> | Minus |
2R | 6884729..6884848 | 16..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:29:10 Download gff for
BS05665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2771361..2771963 | 278..880 | 100 | -> | Minus |
arm_2R | 2772022..2772163 | 136..277 | 100 | -> | Minus |
arm_2R | 2772234..2772353 | 16..135 | 100 | | Minus |
BS05665.5prime Sequence
866 bp (732 high quality bases) assembled on 2005-12-02
> BS05665.5prime
GAAGTTATCAGTCGACATGTATTACTTGTGCATTTTCCTGTGGGTCACTT
CAGTGGCATGTCAGACCTCCAAAGAGATCTACCAACTACTTTCCAAGAGC
CATACAAACCAGAACCTCGTCGTCTCGCCCGTCTCCATAGAGACCATCCT
TAGCATGGTCTTCATGGGCGCAGAAGGCTCGACGGCCAAGGAGCTGCAGA
GCGCCTTAGGTTTACCATCGGAGGACAAAGAGGCGGTGGCAGCCAGGTAC
GGTGCTCTCCTCAACGATCTTCAGGGACAGGAGGAGGGACCCATACTAAA
GCTCGCGAATCGCATCTACGTCAACGACCAGTACAGCCTGAATCAGAACT
ACAACCTCGCTGTGAGGGAACCCTTCAAGTCCGAGGCGGAGTCCATTAGT
CTGACCAATGGCCCTGTGGCGGCCGAGAGAATCAACCAGTGGGTGCTGGA
TCAGACCAGTGGTAAAATCAAGGGCATGATCGATCCCGGCAGCATGACGT
CCGACGTGAAGGCCTTGCTGGTGAACGCCATCTACTTTAAGGGCCAGTGG
GAGTCGAAGTTTGACCCAGCTAAGACCAGAGCCTCCACCTTCCAAGTAAC
TGCGAACAAGAGTGTGCCCGTCCAGATGATGGCGCAAATGGGAACATTCA
GGGCTAACTACTTCCGCGATCTAGATGCCCAAGTCATCGAGCTGCCGTAC
CTTAACTCCAACCTGTCCATGACTATCTTTCTGCCCCGAGAAGTGGAGGG
CTTGAGCGCCCTGGAAGAGAAGATCGTTGGCTTCGCCAGGCCGCTGGGTG
CCAAGGAGGTCTATCTTAAGCTGCCCAAGTTTAAAATCGAAATTCGTGAT
GAACTCAAAGAGACTT
BS05665.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9456-PA | 1119 | Spn1-RA | 1..848 | 17..864 | 4190 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:58:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn42Dd-RB | 1195 | CG9456-RB | 51..898 | 17..864 | 4210 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6883614..6884448 | 30..864 | 4145 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:58:54 has no hits.
BS05665.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:23 Download gff for
BS05665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn1-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:32 Download gff for
BS05665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9456-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:04:02 Download gff for
BS05665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Dd-RB | 46..900 | 11..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:48 Download gff for
BS05665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Dd-RB | 46..900 | 11..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:48 Download gff for
BS05665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6883614..6884450 | 30..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:04:02 Download gff for
BS05665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2771119..2771955 | 30..866 | 99 | | Plus |
BS05665.complete Sequence
1151 bp (1151 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635205
> BS05665.complete
GAAGTTATCAGTCGACATGTATTACTTGTGCATTTTCCTGTGGGTCACTT
CAGTGGCATGTCAGACCTCCAAAGAGATCTACCAACTACTTTCCAAGAGC
CATACAAACCAGAACCTCGTCGTCTCGCCCGTCTCCATAGAGACCATCCT
TAGCATGGTCTTCATGGGCGCAGAAGGCTCGACGGCCAAGGAGCTGCAGA
GCGCCTTAGGTTTACCATCGGAGGACAAAGAGGCGGTGGCAGCCAGGTAC
GGTGCTCTCCTCAACGATCTTCAGGGACAGGAGGAGGGACCCATACTAAA
GCTCGCGAATCGCATCTACGTCAACGACCAGTACAGCCTGAATCAGAACT
ACAACCTCGCTGTGAGGGAACCCTTCAAGTCCGAGGCGGAGTCCATTAGT
CTGACCAATGGCCCTGTGGCGGCCGAGAGAATCAACCAGTGGGTGCTGGA
TCAGACCAGTGGTAAAATCAAGGGCATGATCGATCCCGGCAGCATGACGT
CCGACGTGAAGGCCTTGCTGGTGAACGCCATCTACTTTAAGGGCCAGTGG
GAGTCGAAGTTTGACCCAGCTAAGACCAGAGCCTCCACCTTCCAAGTAAC
TGCGAACAAGAGTGTGCCCGTCCAGATGATGGCGCAAATGGGAACATTCA
GGGCTAACTACTTCCGCGATCTAGATGCCCAAGTCATCGAGCTGCCGTAC
CTTAACTCCAACCTGTCCATGACTATCTTTCTGCCCCGAGAAGTGGAGGG
CTTGAGCGCCCTGGAAGAGAAGATCGTTGGCTTCGCCAGGCCGCTGGTTG
CCAAGGAGGTCTATCTTAAGCTGCCCAAGTTTAAAATCGAATTTCGTGAT
GAACTCAAAGAGACCTTAGAGAAGCTGGGCATCCGAGAGCTATTCACCGA
CAAGTCAGACTTAAGCGGCTTGTTCGCCGATAAGTCAGGCGGCAAAGTCA
GTCAGGTCTCGCACAAGGCGTTTCTGGAGGTGAACGAGGAGGGAGCGGAG
GCCGCAGGTGCCACATCTGTGGCCGTCACAAATCGAGCGGGATTTTCTAC
GTTCCTCATGGCCGATCATCCCTTTGCCTTCGTCATTCGCGATGCGAACA
CCATATATTTCCAGGGGCGTGTTGTAAGCCCTTGAAAGCTTTCTAGACCA
T
BS05665.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn42Dd-RB | 1119 | CG9456-PB | 1..1119 | 17..1135 | 5595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn42Dd-RB | 1195 | CG9456-RB | 51..1170 | 17..1136 | 5600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6883614..6884458 | 30..874 | 4225 | 100 | Plus |
2R | 25286936 | 2R | 6884514..6884658 | 872..1016 | 725 | 100 | Plus |
2R | 25286936 | 2R | 6884729..6884848 | 1017..1136 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:02:04 has no hits.
BS05665.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:37 Download gff for
BS05665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn1-RA | 1..1119 | 17..1135 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:22 Download gff for
BS05665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn1-RB | 46..1170 | 11..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:00 Download gff for
BS05665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Dd-RB | 51..1168 | 17..1134 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:37 Download gff for
BS05665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn1-RA | 323..1447 | 11..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:18 Download gff for
BS05665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Dd-RB | 51..1168 | 17..1134 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:18 Download gff for
BS05665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6883614..6884458 | 30..874 | 100 | -> | Plus |
2R | 6884517..6884658 | 875..1016 | 100 | -> | Plus |
2R | 6884729..6884846 | 1017..1134 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:00 Download gff for
BS05665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2771119..2771963 | 30..874 | 100 | -> | Plus |
arm_2R | 2772022..2772163 | 875..1016 | 100 | -> | Plus |
arm_2R | 2772234..2772351 | 1017..1134 | 100 | | Plus |
BS05665.pep Sequence
Translation from 16 to 1134
> BS05665.pep
MYYLCIFLWVTSVACQTSKEIYQLLSKSHTNQNLVVSPVSIETILSMVFM
GAEGSTAKELQSALGLPSEDKEAVAARYGALLNDLQGQEEGPILKLANRI
YVNDQYSLNQNYNLAVREPFKSEAESISLTNGPVAAERINQWVLDQTSGK
IKGMIDPGSMTSDVKALLVNAIYFKGQWESKFDPAKTRASTFQVTANKSV
PVQMMAQMGTFRANYFRDLDAQVIELPYLNSNLSMTIFLPREVEGLSALE
EKIVGFARPLVAKEVYLKLPKFKIEFRDELKETLEKLGIRELFTDKSDLS
GLFADKSGGKVSQVSHKAFLEVNEEGAEAAGATSVAVTNRAGFSTFLMAD
HPFAFVIRDANTIYFQGRVVSP*
BS05665.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn42Dd-PB | 372 | CG9456-PB | 1..372 | 1..372 | 1871 | 100 | Plus |
Spn38F-PA | 372 | CG9334-PA | 1..370 | 1..372 | 884 | 49.7 | Plus |
Spn38F-PB | 370 | CG9334-PB | 1..368 | 1..372 | 881 | 49.5 | Plus |
Spn28F-PA | 375 | CG8137-PA | 1..373 | 1..372 | 854 | 47.9 | Plus |
Spn28B-PB | 378 | CG6717-PB | 1..376 | 1..372 | 755 | 42.6 | Plus |