Clone Sequence Records
BS05666.5prime Sequence
381 bp (380 high quality bases) assembled on 2005-12-02
> BS05666.5prime
GAAGTTATCAGTCGACATGAAGCCGAAGAAATCGGCCTTTGCCAATTCAT
CCACGGGATACGGCAGGAACAAGCACGGTAAAGGACACTCTGGCAAGGAT
AAAGTCGAGGGTGGTGGTAAGGGCAAGAGCCGAGACGAGAAGGATAAGCA
TAAGCATGAGCAGAAGGTGGACGAGAAGGATGACAAGGATCTAAATTCCG
GCTTCGGCGACTATCTTCGCACTCCGGAGGCATTTGAAATGATGAAACTC
TTTGTCTTCGCCAATACCATAATGCTAATTGTCACCATGGCCTGGCCGCA
CATCAAGGAGCAATTCTACATGGTTAATCAATGGCTTGAAAGCTTCCGCG
AGGAGCATCAGCAGTAGAAGCTTTCTAGACC
BS05666.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4468-PA | 351 | CG4468-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42508-RA | 949 | CG42508-RA | 119..471 | 17..369 | 1765 | 100 | Plus |
| Xport-RA | 949 | CG4468-RA | 119..471 | 17..369 | 1765 | 100 | Plus |
| CG42508-RB | 1029 | CG42508-RB | 119..475 | 17..369 | 1715 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19915081..19915294 | 230..17 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 19914874..19915013 | 369..230 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:52:26 has no hits.
BS05666.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:25 Download gff for
BS05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-PA | 1..351 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:35 Download gff for
BS05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-PA | 1..351 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:43:27 Download gff for
BS05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 116..468 | 17..369 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:50:42 Download gff for
BS05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 119..471 | 17..369 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:50:42 Download gff for
BS05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19914874..19915012 | 231..369 | 100 | <- | Minus |
| 3R | 19915081..19915294 | 17..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:43:27 Download gff for
BS05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15740596..15740734 | 231..369 | 100 | <- | Minus |
| arm_3R | 15740803..15741016 | 17..230 | 100 | | Minus |
BS05666.complete Sequence
383 bp (383 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635206
> BS05666.complete
GAAGTTATCAGTCGACATGAAGCCGAAGAAATCGGCCTTTGCCAATTCAT
CCACGGGATACGGCAGGAACAAGCACGGTAAAGGACACTCTGGCAAGGAT
AAAGTCGAGGGTGGTGGTAAGGGCAAGAGCCGAGACGAGAAGGATAAGCA
TAAGCATGAGCAGAAGGTGGACGAGAAGGATGACAAGGATCTAAATTCCG
GCTTCGGCGACTATCTTCGCACTCCGGAGGCATTTGAAATGATGAAACTC
TTTGTCTTCGCCAATACCATAATGCTAATTGTCACCATGGCCTGGCCGCA
CATCAAGGAGCAATTCTACATGGTTAATCAATGGCTTGAAAGCTTCCGCG
AGGAGCATCAGCAGTAGAAGCTTTCTAGACCAT
BS05666.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xport-RA | 351 | CG4468-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42508-RA | 949 | CG42508-RA | 119..471 | 17..369 | 1765 | 100 | Plus |
| Xport-RA | 949 | CG4468-RA | 119..471 | 17..369 | 1765 | 100 | Plus |
| CG42508-RB | 1029 | CG42508-RB | 119..475 | 17..369 | 1690 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19915081..19915294 | 230..17 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 19914874..19915013 | 369..230 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:33:49 has no hits.
BS05666.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:38 Download gff for
BS05666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-RA | 1..351 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:31 Download gff for
BS05666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-RA | 116..468 | 17..369 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:32 Download gff for
BS05666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 116..466 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:38 Download gff for
BS05666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-RA | 116..468 | 17..369 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:20 Download gff for
BS05666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 119..469 | 17..367 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:20 Download gff for
BS05666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19914876..19915012 | 231..367 | 100 | <- | Minus |
| 3R | 19915081..19915294 | 17..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:32 Download gff for
BS05666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15740598..15740734 | 231..367 | 100 | <- | Minus |
| arm_3R | 15740803..15741016 | 17..230 | 100 | | Minus |
BS05666.3prime Sequence
381 bp (380 high quality bases) assembled on 2005-12-02
> BS05666.3prime
ATGGTCTAGAAAGCTTCTACTGCTGATGCTCCTCGCGGAAGCTTTCAAGC
CATTGATTAACCATGTAGAATTGCTCCTTGATGTGCGGCCAGGCCATGGT
GACAATTAGCATTATGGTATTGGCGAAGACAAAGAGTTTCATCATTTCAA
ATGCCTCCGGAGTGCGAAGATAGTCGCCGAAGCCGGAATTTAGATCCTTG
TCATCCTTCTCGTCCACCTTCTGCTCATGCTTATGCTTATCCTTCTCGTC
TCGGCTCTTGCCCTTACCACCACCCTCGACTTTATCCTTGCCAGAGTGTC
CTTTACCGTGCTTGTTCCTGCCGTATCCCGTGGATGAATTGGCAAAGGCC
GATTTCTTCGGCTTCATGTCGACTGATAACT
BS05666.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4468-PA | 351 | CG4468-RA | 1..351 | 367..17 | 1755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42508-RA | 949 | CG42508-RA | 119..471 | 367..15 | 1765 | 100 | Minus |
| Xport-RA | 949 | CG4468-RA | 119..471 | 367..15 | 1765 | 100 | Minus |
| CG42508-RB | 1029 | CG42508-RB | 119..475 | 367..15 | 1715 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19915081..19915294 | 154..367 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 19914874..19915013 | 15..154 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:09:06 has no hits.
BS05666.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:24 Download gff for
BS05666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-PA | 1..351 | 17..367 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:34 Download gff for
BS05666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-PA | 1..351 | 17..367 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:34 Download gff for
BS05666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 116..468 | 15..367 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:00:53 Download gff for
BS05666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 119..471 | 15..367 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:00:53 Download gff for
BS05666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19914874..19915012 | 15..153 | 100 | <- | Plus |
| 3R | 19915081..19915294 | 154..367 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:34 Download gff for
BS05666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15740596..15740734 | 15..153 | 100 | <- | Plus |
| arm_3R | 15740803..15741016 | 154..367 | 100 | | Plus |
BS05666.pep Sequence
Translation from 16 to 366
> BS05666.pep
MKPKKSAFANSSTGYGRNKHGKGHSGKDKVEGGGKGKSRDEKDKHKHEQK
VDEKDDKDLNSGFGDYLRTPEAFEMMKLFVFANTIMLIVTMAWPHIKEQF
YMVNQWLESFREEHQQ*
BS05666.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xport-PA | 116 | CG4468-PA | 1..116 | 1..116 | 628 | 100 | Plus |
