Clone Sequence Records
BS05668.3prime Sequence
846 bp (789 high quality bases) assembled on 2005-12-02
> BS05668.3prime
ATGGTCTAGAAAGCTTCTAGTGCTGGGGCACGTGGAACTGCTTCTGCAGC
CTTACATGGGTGGAGGCCACCGCCTTGAATGGATGTTTGACCGTTTGTCT
GCTGGGCTTCGAAGGAGCAGAAGTGGCACTGGCACTGGTCGATGGCGTGG
CTATATCCTTGCTGGCAGATCGGATCTTGGCCCCAAAAACATTCTCCCGC
GGAGGAACCTGGTTGCCCGGCTGCGTGGGTTCCCTCTCGTCATCCGTTGC
CGTTCCAGATTCCTCGTCCTCTTCGCCACTTTGCTCGGTTTCCTCATCTT
CATCATCTTCCTCTTCATCCTGCTCGTCGGTTTCATCTTCGGGTTCTGTT
TTACTTCCATGATTGATTCCGGCTCCCGTCAGATTCCTATTGCTCCTGGA
CAACTTCGGGCGCCTCTTGAGCGGACTGACCAGGTGCTCGTGCTCCAAGC
TATCCATCGACTGGGAGCGCAGTCCCTTTTTGAGTGCAGTTTTCCTGGAA
GCCAGCTCTTCTTTGGTCTTCATGAGTTTCTGAAACTCAATGAAATCGTC
GCGCTCATCAATGGTTCCAATATCATAGTAGCTTGCGCTGAGTATCTCCA
ATGCCTTGGTGTGCTGTTTCATGGCGATCAGTATAAAATCGCTGATTATC
TGCTTTAAGTCGCGCAACTTCCGCTGCTCGAAGTTGCCAATAATGTCGTC
TATCTCCTTGTTTGTGCGCTGCACCTCCATTTTGGCCTTAAACAGCTCCG
AATCGGCGGCACTATTGTTCGCAGAAAACTTTGACTTGAGCTNCAGCATC
TGGCGCTGACGTAGTACCTCCTTATCCCGCGCTATGACAGCCAGTC
BS05668.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6405-PA | 1188 | CG6405-RA | 359..1188 | 846..17 | 4106 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6405-RA | 1326 | CG6405-RA | 393..1222 | 846..17 | 4124 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12425539..12426010 | 763..292 | 2360 | 100 | Minus |
2L | 23513712 | 2L | 12426059..12426336 | 294..17 | 1390 | 100 | Minus |
2L | 23513712 | 2L | 12425401..12425483 | 846..764 | 389 | 97.6 | Minus |
Blast to na_te.dros performed 2015-02-10 22:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cr1a | 4470 | Cr1a DMCR1A 4470bp | 1431..1457 | 291..317 | 108 | 88.9 | Plus |
BS05668.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:29 Download gff for
BS05668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-PA | 359..1188 | 17..846 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:40 Download gff for
BS05668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-PA | 359..1188 | 17..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:21:34 Download gff for
BS05668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 393..1226 | 12..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:59 Download gff for
BS05668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 393..1226 | 12..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:59 Download gff for
BS05668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12426061..12426340 | 12..292 | 99 | | Minus |
2L | 12425401..12425483 | 764..846 | 97 | -> | Minus |
2L | 12425539..12426009 | 293..763 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:21:34 Download gff for
BS05668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12425401..12425483 | 764..846 | 97 | -> | Minus |
arm_2L | 12425539..12426009 | 293..763 | 100 | -> | Minus |
arm_2L | 12426061..12426340 | 12..292 | 99 | | Minus |
BS05668.5prime Sequence
830 bp (724 high quality bases) assembled on 2005-12-02
> BS05668.5prime
GAAGTTATCAGTCGACATGTTTCGTCGTGGAAAACTATCCTTTCTAAACA
CCAAAGATGACCGTGTTAAAATAATAAACGAGCGCATAAACATAACAGAA
AGGCATCTAATGGAGATGTGCTCTTCGTTTGCTTTGGTAACGCGGAAAAT
GGCCAAATATCGGGACTCCTTTGATGAGTTGGCCAAGAGTGTGAAGAGCT
ACGCCGACGACGAGGAAATCAACGAGAGTCTCTGTCAGGGACTGAAGAGC
TTCACCAACGCGGTTACCATAATGGGTGATTACATGGACATCAATGTACA
CCGATTGGAACACAAGATTGTCAACGAGTTGGCGCAATTCGAGCAGCTTT
GCAAGTCCACAAGGGACAATCTTCGACTGGCTGTCATAGCGCGGGATAAG
GAGGTACTACGTCAGCGCCAGATGCTTGAGCTCAAGTCAAAGTTTTCTGC
GAACAATAGTGCCGCCGATTCGGAGCTGTTTAAGGCCAAAATGGAGGTGC
AGCGCACAAACAAGGAGATAGACGACATTATTGGCAACTTCGAGCAGCGG
AAGTTGCGCGACTTAAAGCAGATAATCAGCGATTTTATACTGATCGCCAT
GAAACAGCACACCAAGGCATTGGAGATACTCAGCGCAAGCTACTATGATA
TTGGAACCATTGATGAGCGCGACGATTTCATTGAGTTTCAGAAACTCATG
AAGACCAAAGAAGAGCTGGCTTCCAGGATAACTGCACTCAAAAAGGGACT
GCGCTCCCAGTCGATGGATAGCTTGGAGCACGAGCACCTGGTCAGTCCGC
TCAAGAGGCGCCCGAAGTTGTCCAGGAGCA
BS05668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6405-PA | 1188 | CG6405-RA | 1..814 | 17..830 | 4045 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6405-RA | 1326 | CG6405-RA | 35..848 | 17..830 | 4055 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12425539..12425911 | 458..830 | 1850 | 99.7 | Plus |
2L | 23513712 | 2L | 12425129..12425288 | 157..316 | 800 | 100 | Plus |
2L | 23513712 | 2L | 12425341..12425483 | 315..457 | 715 | 100 | Plus |
2L | 23513712 | 2L | 12424938..12425077 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:47:14 has no hits.
BS05668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:30 Download gff for
BS05668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:41 Download gff for
BS05668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:42:38 Download gff for
BS05668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 35..847 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:49:57 Download gff for
BS05668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 35..847 | 17..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:49:57 Download gff for
BS05668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12424938..12425077 | 17..156 | 100 | -> | Plus |
2L | 12425129..12425288 | 157..316 | 100 | -> | Plus |
2L | 12425343..12425483 | 317..457 | 100 | -> | Plus |
2L | 12425539..12425910 | 458..829 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:42:38 Download gff for
BS05668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12424938..12425077 | 17..156 | 100 | -> | Plus |
arm_2L | 12425129..12425288 | 157..316 | 100 | -> | Plus |
arm_2L | 12425343..12425483 | 317..457 | 100 | -> | Plus |
arm_2L | 12425539..12425910 | 458..829 | 99 | | Plus |
BS05668.complete Sequence
1220 bp (1220 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635207
> BS05668.complete
GAAGTTATCAGTCGACATGTTTCGTCGTGGAAAACTATCCTTTCTAAACA
CCAAAGATGACCGTGTTAAAATAATAAACGAGCGCATAAACATAACAGAA
AGGCATCTAATGGAGATGTGCTCTTCGTTTGCTTTGGTAACGCGGAAAAT
GGCCAAATATCGGGACTCCTTTGATGAGTTGGCCAAGAGTGTGAAGAGCT
ACGCCGACGACGAGGAAATCAACGAGAGTCTCTGTCAGGGACTGAAGAGC
TTCACCAACGCGGTTACCATAATGGGTGATTACATGGACATCAATGTACA
CCGATTGGAACACAAGATTGTCAACGAGTTGGCGCAATTCGAGCAGCTTT
GCAAGTCCACAAGGGACAATCTTCGACTGGCTGTCATAGCGCGGGATAAG
GAGGTACTACGTCAGCGCCAGATGCTTGAGCTCAAGTCAAAGTTTTCTGC
GAACAATAGTGCCGCCGATTCGGAGCTGTTTAAGGCCAAAATGGAGGTGC
AGCGCACAAACAAGGAGATAGACGACATTATTGGCAACTTCGAGCAGCGG
AAGTTGCGCGACTTAAAGCAGATAATCAGCGATTTTATACTGATCGCCAT
GAAACAGCACACCAAGGCATTGGAGATACTCAGCGCAAGCTACTATGATA
TTGGAACCATTGATGAGCGCGACGATTTCATTGAGTTTCAGAAACTCATG
AAGACCAAAGAAGAGCTGGCTTCCAGGAAAACTGCACTCAAAAAGGGACT
GCGCTCCCAGTCGATGGATAGCTTGGAGCACGAGCACCTGGTCAGTCCGC
TCAAGAGGCGCCCGAAGTTGTCCAGGAGCAATAGGAATCTGACGGGAGCC
GGAATCAATCATGGAAGTAAAACAGAACCCGAAGATGAAACCGACGAGCA
GGATGAAGAGGAAGATGATGAAGATGAGGAAACCGAGCAAAGTGGCGAAG
AGGACGAGGAATCTGGAACGGCAACGGATGACGAGAGGGAACCCACGCAG
CCGGGCAACCAGGTTCCTCCGCGGGAGAATGTTTTTGGGGCCAAGATCCG
ATCTGCCAGCAAGGATATAGCCACGCCATCGACCAGTGCCAGTGCCACTT
CTGCTCCTTCGAAGCCCAGCAGACAAACGGTCAAACATCCATTCAAGGCG
GTGGCCTCCACCCATGTAAGGCTGCAGAAGCAGTTCCACGTGCCCCAGCA
CTAGAAGCTTTCTAGACCAT
BS05668.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:35:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6405-RA | 1188 | CG6405-PA | 1..1188 | 17..1204 | 5940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:35:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6405-RA | 1326 | CG6405-RA | 35..1222 | 17..1204 | 5940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12425539..12426010 | 458..929 | 2360 | 100 | Plus |
2L | 23513712 | 2L | 12426059..12426336 | 927..1204 | 1390 | 100 | Plus |
2L | 23513712 | 2L | 12425129..12425288 | 157..316 | 800 | 100 | Plus |
2L | 23513712 | 2L | 12425341..12425483 | 315..457 | 715 | 100 | Plus |
2L | 23513712 | 2L | 12424938..12425077 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:35:30 has no hits.
BS05668.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:39 Download gff for
BS05668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 1..1188 | 17..1204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:24 Download gff for
BS05668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 35..1226 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:37 Download gff for
BS05668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 41..1222 | 23..1204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:40 Download gff for
BS05668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 35..1226 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:44 Download gff for
BS05668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 41..1222 | 23..1204 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:44 Download gff for
BS05668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12424944..12425077 | 23..156 | 100 | -> | Plus |
2L | 12425129..12425288 | 157..316 | 100 | -> | Plus |
2L | 12425343..12425483 | 317..457 | 100 | -> | Plus |
2L | 12425539..12426009 | 458..928 | 100 | -> | Plus |
2L | 12426061..12426336 | 929..1204 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:37 Download gff for
BS05668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12424944..12425077 | 23..156 | 100 | -> | Plus |
arm_2L | 12425129..12425288 | 157..316 | 100 | -> | Plus |
arm_2L | 12425343..12425483 | 317..457 | 100 | -> | Plus |
arm_2L | 12425539..12426009 | 458..928 | 100 | -> | Plus |
arm_2L | 12426061..12426336 | 929..1204 | 100 | | Plus |
BS05668.pep Sequence
Translation from 16 to 1203
> BS05668.pep
MFRRGKLSFLNTKDDRVKIINERINITERHLMEMCSSFALVTRKMAKYRD
SFDELAKSVKSYADDEEINESLCQGLKSFTNAVTIMGDYMDINVHRLEHK
IVNELAQFEQLCKSTRDNLRLAVIARDKEVLRQRQMLELKSKFSANNSAA
DSELFKAKMEVQRTNKEIDDIIGNFEQRKLRDLKQIISDFILIAMKQHTK
ALEILSASYYDIGTIDERDDFIEFQKLMKTKEELASRKTALKKGLRSQSM
DSLEHEHLVSPLKRRPKLSRSNRNLTGAGINHGSKTEPEDETDEQDEEED
DEDEETEQSGEEDEESGTATDDEREPTQPGNQVPPRENVFGAKIRSASKD
IATPSTSASATSAPSKPSRQTVKHPFKAVASTHVRLQKQFHVPQH*
BS05668.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6405-PA | 395 | CG6405-PA | 1..395 | 1..395 | 1997 | 100 | Plus |