Clone BS05668 Report

Search the DGRC for BS05668

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG6405-RA
Protein status:BS05668.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05668.3prime Sequence

846 bp (789 high quality bases) assembled on 2005-12-02

> BS05668.3prime
ATGGTCTAGAAAGCTTCTAGTGCTGGGGCACGTGGAACTGCTTCTGCAGC
CTTACATGGGTGGAGGCCACCGCCTTGAATGGATGTTTGACCGTTTGTCT
GCTGGGCTTCGAAGGAGCAGAAGTGGCACTGGCACTGGTCGATGGCGTGG
CTATATCCTTGCTGGCAGATCGGATCTTGGCCCCAAAAACATTCTCCCGC
GGAGGAACCTGGTTGCCCGGCTGCGTGGGTTCCCTCTCGTCATCCGTTGC
CGTTCCAGATTCCTCGTCCTCTTCGCCACTTTGCTCGGTTTCCTCATCTT
CATCATCTTCCTCTTCATCCTGCTCGTCGGTTTCATCTTCGGGTTCTGTT
TTACTTCCATGATTGATTCCGGCTCCCGTCAGATTCCTATTGCTCCTGGA
CAACTTCGGGCGCCTCTTGAGCGGACTGACCAGGTGCTCGTGCTCCAAGC
TATCCATCGACTGGGAGCGCAGTCCCTTTTTGAGTGCAGTTTTCCTGGAA
GCCAGCTCTTCTTTGGTCTTCATGAGTTTCTGAAACTCAATGAAATCGTC
GCGCTCATCAATGGTTCCAATATCATAGTAGCTTGCGCTGAGTATCTCCA
ATGCCTTGGTGTGCTGTTTCATGGCGATCAGTATAAAATCGCTGATTATC
TGCTTTAAGTCGCGCAACTTCCGCTGCTCGAAGTTGCCAATAATGTCGTC
TATCTCCTTGTTTGTGCGCTGCACCTCCATTTTGGCCTTAAACAGCTCCG
AATCGGCGGCACTATTGTTCGCAGAAAACTTTGACTTGAGCTNCAGCATC
TGGCGCTGACGTAGTACCTCCTTATCCCGCGCTATGACAGCCAGTC

BS05668.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6405-PA 1188 CG6405-RA 359..1188 846..17 4106 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6405-RA 1326 CG6405-RA 393..1222 846..17 4124 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12425539..12426010 763..292 2360 100 Minus
2L 23513712 2L 12426059..12426336 294..17 1390 100 Minus
2L 23513712 2L 12425401..12425483 846..764 389 97.6 Minus
Blast to na_te.dros performed 2015-02-10 22:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cr1a 4470 Cr1a DMCR1A 4470bp 1431..1457 291..317 108 88.9 Plus

BS05668.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:29 Download gff for BS05668.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-PA 359..1188 17..846 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:40 Download gff for BS05668.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-PA 359..1188 17..846 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:21:34 Download gff for BS05668.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 393..1226 12..846 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:59 Download gff for BS05668.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 393..1226 12..846 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:59 Download gff for BS05668.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12426061..12426340 12..292 99   Minus
2L 12425401..12425483 764..846 97 -> Minus
2L 12425539..12426009 293..763 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:21:34 Download gff for BS05668.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12425401..12425483 764..846 97 -> Minus
arm_2L 12425539..12426009 293..763 100 -> Minus
arm_2L 12426061..12426340 12..292 99   Minus

BS05668.5prime Sequence

830 bp (724 high quality bases) assembled on 2005-12-02

> BS05668.5prime
GAAGTTATCAGTCGACATGTTTCGTCGTGGAAAACTATCCTTTCTAAACA
CCAAAGATGACCGTGTTAAAATAATAAACGAGCGCATAAACATAACAGAA
AGGCATCTAATGGAGATGTGCTCTTCGTTTGCTTTGGTAACGCGGAAAAT
GGCCAAATATCGGGACTCCTTTGATGAGTTGGCCAAGAGTGTGAAGAGCT
ACGCCGACGACGAGGAAATCAACGAGAGTCTCTGTCAGGGACTGAAGAGC
TTCACCAACGCGGTTACCATAATGGGTGATTACATGGACATCAATGTACA
CCGATTGGAACACAAGATTGTCAACGAGTTGGCGCAATTCGAGCAGCTTT
GCAAGTCCACAAGGGACAATCTTCGACTGGCTGTCATAGCGCGGGATAAG
GAGGTACTACGTCAGCGCCAGATGCTTGAGCTCAAGTCAAAGTTTTCTGC
GAACAATAGTGCCGCCGATTCGGAGCTGTTTAAGGCCAAAATGGAGGTGC
AGCGCACAAACAAGGAGATAGACGACATTATTGGCAACTTCGAGCAGCGG
AAGTTGCGCGACTTAAAGCAGATAATCAGCGATTTTATACTGATCGCCAT
GAAACAGCACACCAAGGCATTGGAGATACTCAGCGCAAGCTACTATGATA
TTGGAACCATTGATGAGCGCGACGATTTCATTGAGTTTCAGAAACTCATG
AAGACCAAAGAAGAGCTGGCTTCCAGGATAACTGCACTCAAAAAGGGACT
GCGCTCCCAGTCGATGGATAGCTTGGAGCACGAGCACCTGGTCAGTCCGC
TCAAGAGGCGCCCGAAGTTGTCCAGGAGCA

BS05668.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6405-PA 1188 CG6405-RA 1..814 17..830 4045 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6405-RA 1326 CG6405-RA 35..848 17..830 4055 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12425539..12425911 458..830 1850 99.7 Plus
2L 23513712 2L 12425129..12425288 157..316 800 100 Plus
2L 23513712 2L 12425341..12425483 315..457 715 100 Plus
2L 23513712 2L 12424938..12425077 17..156 700 100 Plus
Blast to na_te.dros performed on 2015-02-02 11:47:14 has no hits.

BS05668.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:30 Download gff for BS05668.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:41 Download gff for BS05668.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:42:38 Download gff for BS05668.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 35..847 17..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:49:57 Download gff for BS05668.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 35..847 17..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:49:57 Download gff for BS05668.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12424938..12425077 17..156 100 -> Plus
2L 12425129..12425288 157..316 100 -> Plus
2L 12425343..12425483 317..457 100 -> Plus
2L 12425539..12425910 458..829 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:42:38 Download gff for BS05668.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12424938..12425077 17..156 100 -> Plus
arm_2L 12425129..12425288 157..316 100 -> Plus
arm_2L 12425343..12425483 317..457 100 -> Plus
arm_2L 12425539..12425910 458..829 99   Plus

BS05668.complete Sequence

1220 bp (1220 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635207

> BS05668.complete
GAAGTTATCAGTCGACATGTTTCGTCGTGGAAAACTATCCTTTCTAAACA
CCAAAGATGACCGTGTTAAAATAATAAACGAGCGCATAAACATAACAGAA
AGGCATCTAATGGAGATGTGCTCTTCGTTTGCTTTGGTAACGCGGAAAAT
GGCCAAATATCGGGACTCCTTTGATGAGTTGGCCAAGAGTGTGAAGAGCT
ACGCCGACGACGAGGAAATCAACGAGAGTCTCTGTCAGGGACTGAAGAGC
TTCACCAACGCGGTTACCATAATGGGTGATTACATGGACATCAATGTACA
CCGATTGGAACACAAGATTGTCAACGAGTTGGCGCAATTCGAGCAGCTTT
GCAAGTCCACAAGGGACAATCTTCGACTGGCTGTCATAGCGCGGGATAAG
GAGGTACTACGTCAGCGCCAGATGCTTGAGCTCAAGTCAAAGTTTTCTGC
GAACAATAGTGCCGCCGATTCGGAGCTGTTTAAGGCCAAAATGGAGGTGC
AGCGCACAAACAAGGAGATAGACGACATTATTGGCAACTTCGAGCAGCGG
AAGTTGCGCGACTTAAAGCAGATAATCAGCGATTTTATACTGATCGCCAT
GAAACAGCACACCAAGGCATTGGAGATACTCAGCGCAAGCTACTATGATA
TTGGAACCATTGATGAGCGCGACGATTTCATTGAGTTTCAGAAACTCATG
AAGACCAAAGAAGAGCTGGCTTCCAGGAAAACTGCACTCAAAAAGGGACT
GCGCTCCCAGTCGATGGATAGCTTGGAGCACGAGCACCTGGTCAGTCCGC
TCAAGAGGCGCCCGAAGTTGTCCAGGAGCAATAGGAATCTGACGGGAGCC
GGAATCAATCATGGAAGTAAAACAGAACCCGAAGATGAAACCGACGAGCA
GGATGAAGAGGAAGATGATGAAGATGAGGAAACCGAGCAAAGTGGCGAAG
AGGACGAGGAATCTGGAACGGCAACGGATGACGAGAGGGAACCCACGCAG
CCGGGCAACCAGGTTCCTCCGCGGGAGAATGTTTTTGGGGCCAAGATCCG
ATCTGCCAGCAAGGATATAGCCACGCCATCGACCAGTGCCAGTGCCACTT
CTGCTCCTTCGAAGCCCAGCAGACAAACGGTCAAACATCCATTCAAGGCG
GTGGCCTCCACCCATGTAAGGCTGCAGAAGCAGTTCCACGTGCCCCAGCA
CTAGAAGCTTTCTAGACCAT

BS05668.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6405-RA 1188 CG6405-PA 1..1188 17..1204 5940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6405-RA 1326 CG6405-RA 35..1222 17..1204 5940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12425539..12426010 458..929 2360 100 Plus
2L 23513712 2L 12426059..12426336 927..1204 1390 100 Plus
2L 23513712 2L 12425129..12425288 157..316 800 100 Plus
2L 23513712 2L 12425341..12425483 315..457 715 100 Plus
2L 23513712 2L 12424938..12425077 17..156 700 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:35:30 has no hits.

BS05668.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:39 Download gff for BS05668.complete
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 1..1188 17..1204 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:24 Download gff for BS05668.complete
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 35..1226 17..1209 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:37 Download gff for BS05668.complete
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 41..1222 23..1204 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:40 Download gff for BS05668.complete
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 35..1226 17..1209 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:44 Download gff for BS05668.complete
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 41..1222 23..1204 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:44 Download gff for BS05668.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12424944..12425077 23..156 100 -> Plus
2L 12425129..12425288 157..316 100 -> Plus
2L 12425343..12425483 317..457 100 -> Plus
2L 12425539..12426009 458..928 100 -> Plus
2L 12426061..12426336 929..1204 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:37 Download gff for BS05668.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12424944..12425077 23..156 100 -> Plus
arm_2L 12425129..12425288 157..316 100 -> Plus
arm_2L 12425343..12425483 317..457 100 -> Plus
arm_2L 12425539..12426009 458..928 100 -> Plus
arm_2L 12426061..12426336 929..1204 100   Plus

BS05668.pep Sequence

Translation from 16 to 1203

> BS05668.pep
MFRRGKLSFLNTKDDRVKIINERINITERHLMEMCSSFALVTRKMAKYRD
SFDELAKSVKSYADDEEINESLCQGLKSFTNAVTIMGDYMDINVHRLEHK
IVNELAQFEQLCKSTRDNLRLAVIARDKEVLRQRQMLELKSKFSANNSAA
DSELFKAKMEVQRTNKEIDDIIGNFEQRKLRDLKQIISDFILIAMKQHTK
ALEILSASYYDIGTIDERDDFIEFQKLMKTKEELASRKTALKKGLRSQSM
DSLEHEHLVSPLKRRPKLSRSNRNLTGAGINHGSKTEPEDETDEQDEEED
DEDEETEQSGEEDEESGTATDDEREPTQPGNQVPPRENVFGAKIRSASKD
IATPSTSASATSAPSKPSRQTVKHPFKAVASTHVRLQKQFHVPQH*

BS05668.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6405-PA 395 CG6405-PA 1..395 1..395 1997 100 Plus