Clone BS05669 Report

Search the DGRC for BS05669

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG8206-RA
Protein status:BS05669.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05669.3prime Sequence

606 bp (605 high quality bases) assembled on 2005-12-02

> BS05669.3prime
ATGGTCTAGAAAGCTTCTAAATCAGCTCGCCGCGCTCGTTCACCTTGATC
ACCCGGACGCGGGCATGCCGGTCGGCCAGCACCTGGTCGATATTCTTGCT
GGTACTGATTCCAGAGCTAATGCTGCTATCGCCATCGCTGCCGGTGAACA
GTCCCAGATTGTCCTTGATCAGATGGTCGACGGCACAGCCGTCGCACTGT
AGGATCACCACGCCGCTGTAGTAGGCCTCTTCGCTGATGGTCTTCGTGTT
GCGGGTGTTGCACAGCTTGCAGCGGTACACCAGCTCCATGCGGCGTTGCA
TGCGTCGGAAGCGCTTCAGTGTCGTCGGCGACAGAGAGCCATTCGCCTGG
TTTCCGGACGTGGAGCCTCCCAGGTCAAACTGCTTGGCCGTGAAATGGCA
CGCATCGAGTATGGAGCGCGGTATGGAAAGCGGTGCTGGACGCGACGATT
TTAGGTGCTGCTCGGCATCGTTGGTTAGCGGCACGGCGTCCACCGCTTGT
TGCTGCTGGGTGGCGTTGAGGATCGCGTTTTGTCCATTCTGGCGCAAATA
GTTGAGAGTTCGCGATGTGAAGATGTTGCGCAATGCGTTCATGTCGACTG
ATAACT

BS05669.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8206-PA 576 CG8206-RA 1..576 592..17 2880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8206-RB 1188 CG8206-RB 174..749 592..17 2880 100 Minus
CG8206-RA 1013 CG8206-RA 174..749 592..17 2880 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15739403..15739978 592..17 2880 100 Minus
Blast to na_te.dros performed 2015-02-03 13:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 2481..2526 454..409 113 71.7 Minus
TART-C 11124 TART-C TARTC 11124bp 3933..3978 454..409 113 71.7 Minus

BS05669.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:31 Download gff for BS05669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8206-PA 1..576 17..592 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:42 Download gff for BS05669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8206-PA 1..576 17..592 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:02:55 Download gff for BS05669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 168..758 6..600 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:51:34 Download gff for BS05669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 168..758 6..600 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:51:34 Download gff for BS05669.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15739397..15739987 6..600 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:02:55 Download gff for BS05669.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15633430..15634020 6..600 98   Minus

BS05669.5prime Sequence

606 bp (605 high quality bases) assembled on 2005-12-02

> BS05669.5prime
GAAGTTATCAGTCGACATGAACGCATTGCGCAACATCTTCACATCGCGAA
CTCTCAACTATTTGCGCCAGAATGGACAAAACGCGATCCTCAACGCCACC
CAGCAGCAACAAGCGGTGGACGCCGTGCCGCTAACCAACGATGCCGAGCA
GCACCTAAAATCGTCGCGTCCAGCACCGCTTTCCATACCGCGCTCCATAC
TCGATGCGTGCCATTTCACGGCCAAGCAGTTTGACCTGGGAGGCTCCACG
TCCGGAAACCAGGCGAATGGCTCTCTGTCGCCGACGACACTGAAGCGCTT
CCGACGCATGCAACGCCGCATGGAGCTGGTGTACCGCTGCAAGCTGTGCA
ACACCCGCAACACGAAGACCATCAGCGAAGAGGCCTACTACAGCGGCGTG
GTGATCCTACAGTGCGACGGCTGTGCCGTCGACCATCTGATCAAGGACAA
TCTGGGACTGTTCACCGGCAGCGATGGCGATAGCAGCATTAGCTCTGGAA
TCAGTACCAGCAAGAATATCGACCAGGTGCTGGCCGACCGGCATGCCCGC
GTCCGGGTGATCAAGGTGAACGAGCGCGGCGAGCTGATTTAGAAGCTTTC
TAGACC

BS05669.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8206-PA 576 CG8206-RA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8206-RB 1188 CG8206-RB 174..749 17..592 2880 100 Plus
CG8206-RA 1013 CG8206-RA 174..749 17..592 2880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15739403..15739978 17..592 2880 100 Plus
Blast to na_te.dros performed 2015-02-12 13:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 2481..2526 155..200 113 71.7 Plus
TART-C 11124 TART-C TARTC 11124bp 3933..3978 155..200 113 71.7 Plus

BS05669.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:32 Download gff for BS05669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8206-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:44 Download gff for BS05669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8206-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:32 Download gff for BS05669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 168..758 9..603 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:49:58 Download gff for BS05669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 168..758 9..603 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:49:58 Download gff for BS05669.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15739397..15739987 9..603 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:32 Download gff for BS05669.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15633430..15634020 9..603 98   Plus

BS05669.complete Sequence

608 bp (608 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635208

> BS05669.complete
GAAGTTATCAGTCGACATGAACGCATTGCGCAACATCTTCACATCGCGAA
CTCTCAACTATTTGCGCCAGAATGGACAAAACGCGATCCTCAACGCCACC
CAGCAGCAACAAGCGGTGGACGCCGTGCCGCTAACCAACGATGCCGAGCA
GCACCTAAAATCGTCGCGTCCAGCACCGCTTTCCATACCGCGCTCCATAC
TCGATGCGTGCCATTTCACGGCCAAGCAGTTTGACCTGGGAGGCTCCACG
TCCGGAAACCAGGCGAATGGCTCTCTGTCGCCGACGACACTGAAGCGCTT
CCGACGCATGCAACGCCGCATGGAGCTGGTGTACCGCTGCAAGCTGTGCA
ACACCCGCAACACGAAGACCATCAGCGAAGAGGCCTACTACAGCGGCGTG
GTGATCCTACAGTGCGACGGCTGTGCCGTCGACCATCTGATCAAGGACAA
TCTGGGACTGTTCACCGGCAGCGATGGCGATAGCAGCATTAGCTCTGGAA
TCAGTACCAGCAAGAATATCGACCAGGTGCTGGCCGACCGGCATGCCCGC
GTCCGGGTGATCAAGGTGAACGAGCGCGGCGAGCTGATTTAGAAGCTTTC
TAGACCAT

BS05669.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8206-RB 576 CG8206-PB 1..576 17..592 2880 100 Plus
CG8206-RA 576 CG8206-PA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8206-RB 1188 CG8206-RB 174..749 17..592 2880 100 Plus
CG8206-RA 1013 CG8206-RA 174..749 17..592 2880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15739403..15739978 17..592 2880 100 Plus
Blast to na_te.dros performed 2014-11-27 16:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 2481..2526 155..200 113 71.7 Plus
TART-C 11124 TART-C TARTC 11124bp 3933..3978 155..200 113 71.7 Plus

BS05669.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:48 Download gff for BS05669.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:20 Download gff for BS05669.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 152..742 9..603 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:55 Download gff for BS05669.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 174..749 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:48 Download gff for BS05669.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 152..742 9..603 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:10 Download gff for BS05669.complete
Subject Subject Range Query Range Percent Splice Strand
CG8206-RA 174..749 17..592 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:10 Download gff for BS05669.complete
Subject Subject Range Query Range Percent Splice Strand
X 15739403..15739978 17..592 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:55 Download gff for BS05669.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15633436..15634011 17..592 100   Plus

BS05669.pep Sequence

Translation from 16 to 591

> BS05669.pep
MNALRNIFTSRTLNYLRQNGQNAILNATQQQQAVDAVPLTNDAEQHLKSS
RPAPLSIPRSILDACHFTAKQFDLGGSTSGNQANGSLSPTTLKRFRRMQR
RMELVYRCKLCNTRNTKTISEEAYYSGVVILQCDGCAVDHLIKDNLGLFT
GSDGDSSISSGISTSKNIDQVLADRHARVRVIKVNERGELI*

BS05669.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8206-PB 191 CG8206-PB 1..191 1..191 974 100 Plus
CG8206-PA 191 CG8206-PA 1..191 1..191 974 100 Plus
CG12379-PB 174 CG12379-PB 87..159 97..179 194 44.6 Plus