Clone Sequence Records
BS05669.3prime Sequence
606 bp (605 high quality bases) assembled on 2005-12-02
> BS05669.3prime
ATGGTCTAGAAAGCTTCTAAATCAGCTCGCCGCGCTCGTTCACCTTGATC
ACCCGGACGCGGGCATGCCGGTCGGCCAGCACCTGGTCGATATTCTTGCT
GGTACTGATTCCAGAGCTAATGCTGCTATCGCCATCGCTGCCGGTGAACA
GTCCCAGATTGTCCTTGATCAGATGGTCGACGGCACAGCCGTCGCACTGT
AGGATCACCACGCCGCTGTAGTAGGCCTCTTCGCTGATGGTCTTCGTGTT
GCGGGTGTTGCACAGCTTGCAGCGGTACACCAGCTCCATGCGGCGTTGCA
TGCGTCGGAAGCGCTTCAGTGTCGTCGGCGACAGAGAGCCATTCGCCTGG
TTTCCGGACGTGGAGCCTCCCAGGTCAAACTGCTTGGCCGTGAAATGGCA
CGCATCGAGTATGGAGCGCGGTATGGAAAGCGGTGCTGGACGCGACGATT
TTAGGTGCTGCTCGGCATCGTTGGTTAGCGGCACGGCGTCCACCGCTTGT
TGCTGCTGGGTGGCGTTGAGGATCGCGTTTTGTCCATTCTGGCGCAAATA
GTTGAGAGTTCGCGATGTGAAGATGTTGCGCAATGCGTTCATGTCGACTG
ATAACT
BS05669.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8206-PA | 576 | CG8206-RA | 1..576 | 592..17 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8206-RB | 1188 | CG8206-RB | 174..749 | 592..17 | 2880 | 100 | Minus |
CG8206-RA | 1013 | CG8206-RA | 174..749 | 592..17 | 2880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15739403..15739978 | 592..17 | 2880 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 13:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 2481..2526 | 454..409 | 113 | 71.7 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 3933..3978 | 454..409 | 113 | 71.7 | Minus |
BS05669.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:31 Download gff for
BS05669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8206-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:42 Download gff for
BS05669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8206-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:02:55 Download gff for
BS05669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8206-RA | 168..758 | 6..600 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:51:34 Download gff for
BS05669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8206-RA | 168..758 | 6..600 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:51:34 Download gff for
BS05669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15739397..15739987 | 6..600 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:02:55 Download gff for
BS05669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15633430..15634020 | 6..600 | 98 | | Minus |
BS05669.5prime Sequence
606 bp (605 high quality bases) assembled on 2005-12-02
> BS05669.5prime
GAAGTTATCAGTCGACATGAACGCATTGCGCAACATCTTCACATCGCGAA
CTCTCAACTATTTGCGCCAGAATGGACAAAACGCGATCCTCAACGCCACC
CAGCAGCAACAAGCGGTGGACGCCGTGCCGCTAACCAACGATGCCGAGCA
GCACCTAAAATCGTCGCGTCCAGCACCGCTTTCCATACCGCGCTCCATAC
TCGATGCGTGCCATTTCACGGCCAAGCAGTTTGACCTGGGAGGCTCCACG
TCCGGAAACCAGGCGAATGGCTCTCTGTCGCCGACGACACTGAAGCGCTT
CCGACGCATGCAACGCCGCATGGAGCTGGTGTACCGCTGCAAGCTGTGCA
ACACCCGCAACACGAAGACCATCAGCGAAGAGGCCTACTACAGCGGCGTG
GTGATCCTACAGTGCGACGGCTGTGCCGTCGACCATCTGATCAAGGACAA
TCTGGGACTGTTCACCGGCAGCGATGGCGATAGCAGCATTAGCTCTGGAA
TCAGTACCAGCAAGAATATCGACCAGGTGCTGGCCGACCGGCATGCCCGC
GTCCGGGTGATCAAGGTGAACGAGCGCGGCGAGCTGATTTAGAAGCTTTC
TAGACC
BS05669.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8206-PA | 576 | CG8206-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8206-RB | 1188 | CG8206-RB | 174..749 | 17..592 | 2880 | 100 | Plus |
CG8206-RA | 1013 | CG8206-RA | 174..749 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15739403..15739978 | 17..592 | 2880 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 13:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 2481..2526 | 155..200 | 113 | 71.7 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 3933..3978 | 155..200 | 113 | 71.7 | Plus |
BS05669.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:32 Download gff for
BS05669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8206-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:44 Download gff for
BS05669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8206-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:32 Download gff for
BS05669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8206-RA | 168..758 | 9..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:49:58 Download gff for
BS05669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8206-RA | 168..758 | 9..603 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:49:58 Download gff for
BS05669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15739397..15739987 | 9..603 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:32 Download gff for
BS05669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15633430..15634020 | 9..603 | 98 | | Plus |
BS05669.complete Sequence
608 bp (608 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635208
> BS05669.complete
GAAGTTATCAGTCGACATGAACGCATTGCGCAACATCTTCACATCGCGAA
CTCTCAACTATTTGCGCCAGAATGGACAAAACGCGATCCTCAACGCCACC
CAGCAGCAACAAGCGGTGGACGCCGTGCCGCTAACCAACGATGCCGAGCA
GCACCTAAAATCGTCGCGTCCAGCACCGCTTTCCATACCGCGCTCCATAC
TCGATGCGTGCCATTTCACGGCCAAGCAGTTTGACCTGGGAGGCTCCACG
TCCGGAAACCAGGCGAATGGCTCTCTGTCGCCGACGACACTGAAGCGCTT
CCGACGCATGCAACGCCGCATGGAGCTGGTGTACCGCTGCAAGCTGTGCA
ACACCCGCAACACGAAGACCATCAGCGAAGAGGCCTACTACAGCGGCGTG
GTGATCCTACAGTGCGACGGCTGTGCCGTCGACCATCTGATCAAGGACAA
TCTGGGACTGTTCACCGGCAGCGATGGCGATAGCAGCATTAGCTCTGGAA
TCAGTACCAGCAAGAATATCGACCAGGTGCTGGCCGACCGGCATGCCCGC
GTCCGGGTGATCAAGGTGAACGAGCGCGGCGAGCTGATTTAGAAGCTTTC
TAGACCAT
BS05669.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8206-RB | 576 | CG8206-PB | 1..576 | 17..592 | 2880 | 100 | Plus |
CG8206-RA | 576 | CG8206-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8206-RB | 1188 | CG8206-RB | 174..749 | 17..592 | 2880 | 100 | Plus |
CG8206-RA | 1013 | CG8206-RA | 174..749 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15739403..15739978 | 17..592 | 2880 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 2481..2526 | 155..200 | 113 | 71.7 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 3933..3978 | 155..200 | 113 | 71.7 | Plus |
BS05669.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:48 Download gff for
BS05669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8206-RA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:20 Download gff for
BS05669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8206-RA | 152..742 | 9..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:55 Download gff for
BS05669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8206-RA | 174..749 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:48 Download gff for
BS05669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8206-RA | 152..742 | 9..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:10 Download gff for
BS05669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8206-RA | 174..749 | 17..592 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:10 Download gff for
BS05669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15739403..15739978 | 17..592 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:55 Download gff for
BS05669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15633436..15634011 | 17..592 | 100 | | Plus |
BS05669.pep Sequence
Translation from 16 to 591
> BS05669.pep
MNALRNIFTSRTLNYLRQNGQNAILNATQQQQAVDAVPLTNDAEQHLKSS
RPAPLSIPRSILDACHFTAKQFDLGGSTSGNQANGSLSPTTLKRFRRMQR
RMELVYRCKLCNTRNTKTISEEAYYSGVVILQCDGCAVDHLIKDNLGLFT
GSDGDSSISSGISTSKNIDQVLADRHARVRVIKVNERGELI*
BS05669.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8206-PB | 191 | CG8206-PB | 1..191 | 1..191 | 974 | 100 | Plus |
CG8206-PA | 191 | CG8206-PA | 1..191 | 1..191 | 974 | 100 | Plus |
CG12379-PB | 174 | CG12379-PB | 87..159 | 97..179 | 194 | 44.6 | Plus |