Clone Sequence Records
BS05670.3prime Sequence
681 bp (680 high quality bases) assembled on 2005-12-02
> BS05670.3prime
ATGGTCTAGAAAGCTTTTAGTTTACCCATTTACTGATGATGTCCTTGACG
TCATCCATTTCGTCGTCGGACGACGAGTGCGATAGTCCACTGTACGTCTT
GAACGTCACATTCTTCATGAACGACTTGAGCAGGCTGGCGCTCAGCTGGC
CGAATTTGTACGGCACCACGGGATCGTAGTCGCCATGCGCCTGGAAAATC
GGCACATCATCGCTGTTCACCTTGGCGCCTGGGAACTGCTTGTGCAGCGG
CAGCCAACAGGATAGGGCCACCACGCCGGCCAGCGGCTGATCGTACGTGA
GTGCCGAGTACAGTGCCAAGGCTCCGCCCTGCGAGAATCCGCCCAGGACA
ATGCGATTGGCCGGAATCCCAGCGCTAATCTCCTTCTGGATCATACCGTG
CACACTATCACGCGCCGACTGGATGCCCGGCTCGTCCTCGGGCCCACCGA
TGTCCAGCGTCTTCAGGTCAAACCACGACGGCATGCGGAAGCCGGCGTTC
AGCGAAACGGGCTGTGTGGGCGCCGTGGGGCAGATGACTTTCATGAAAGG
TGGGCGGATGGCGGCTAGGGCACTGCTCCAGCCATGACCCGTATCACCCA
GGCCGTGCATGAAGATCAGCGTGGCGGTTTGCTTGACCGTGGCCTCGACA
ATGACCGGCGCAGCCATGTCGACTGATAACT
BS05670.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18815-PA | 651 | CG18815-RA | 1..651 | 667..17 | 3255 | 100 | Minus |
CG18815-PB | 651 | CG18815-RB | 1..651 | 667..17 | 3255 | 100 | Minus |
CG18815-PC | 651 | CG18815-RC | 1..651 | 667..17 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18815-RC | 1181 | CG18815-RC | 143..796 | 670..17 | 3270 | 100 | Minus |
CG18815-RB | 1237 | CG18815-RB | 199..852 | 670..17 | 3270 | 100 | Minus |
CG18815-RA | 1247 | CG18815-RA | 209..862 | 670..17 | 3270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11628960..11629505 | 588..43 | 2730 | 100 | Minus |
3L | 28110227 | 3L | 11628451..11628505 | 670..616 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:00:22 has no hits.
BS05670.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:33 Download gff for
BS05670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18815-PB | 1..651 | 17..667 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:45 Download gff for
BS05670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18815-PC | 1..651 | 17..667 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:52 Download gff for
BS05670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18815-RA | 198..865 | 11..681 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:00 Download gff for
BS05670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18815-RA | 198..865 | 11..681 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:00 Download gff for
BS05670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11628440..11628501 | 620..681 | 91 | -> | Minus |
3L | 11628563..11628594 | 588..619 | 100 | -> | Minus |
3L | 11628961..11629504 | 44..587 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:52 Download gff for
BS05670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11621540..11621601 | 620..681 | 91 | -> | Minus |
arm_3L | 11621663..11621694 | 588..619 | 100 | -> | Minus |
arm_3L | 11622061..11622604 | 44..587 | 100 | -> | Minus |
BS05670.5prime Sequence
681 bp (680 high quality bases) assembled on 2005-12-02
> BS05670.5prime
GAAGTTATCAGTCGACATGGCTGCGCCGGTCATTGTCGAGGCCACGGTCA
AGCAAACCGCCACGCTGATCTTCATGCACGGCCTGGGTGATACGGGTCAT
GGCTGGAGCAGTGCCCTAGCCGCCATCCGCCCACCTTTCATGAAAGTCAT
CTGCCCCACGGCGCCCACACAGCCCGTTTCGCTGAACGCCGGCTTCCGCA
TGCCGTCGTGGTTTGACCTGAAGACGCTGGACATCGGTGGGCCCGAGGAC
GAGCCGGGCATCCAGTCGGCGCGTGATAGTGTGCACGGTATGATCCAGAA
GGAGATTAGCGCTGGGATTCCGGCCAATCGCATTGTCCTGGGCGGATTCT
CGCAGGGCGGAGCCTTGGCACTGTACTCGGCACTCACGTACGATCAGCCG
CTGGCCGGCGTGGTGGCCCTATCCTGTTGGCTGCCGCTGCACAAGCAGTT
CCCAGGCGCCAAGGTGAACAGCGATGATGTGCCGATTTTCCAGGCGCATG
GCGACTACGATCCCGTGGTGCCGTACAAATTCGGCCAGCTGAGCGCCAGC
CTGCTCAAGTCGTTCATGAAGAATGTGACGTTCAAGACGTACAGTGGACT
ATCGCACTCGTCGTCCGACGACGAAATGGATGACGTCAAGGACATCATCA
GTAAATGGGTAAACTAAAAGCTTTCTAGACC
BS05670.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18815-PA | 651 | CG18815-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
CG18815-PB | 651 | CG18815-RB | 1..651 | 17..667 | 3255 | 100 | Plus |
CG18815-PC | 651 | CG18815-RC | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18815-RC | 1181 | CG18815-RC | 143..796 | 14..667 | 3270 | 100 | Plus |
CG18815-RB | 1237 | CG18815-RB | 199..852 | 14..667 | 3270 | 100 | Plus |
CG18815-RA | 1247 | CG18815-RA | 209..862 | 14..667 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11628960..11629505 | 96..641 | 2730 | 100 | Plus |
3L | 28110227 | 3L | 11628451..11628505 | 14..68 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:47:39 has no hits.
BS05670.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:34 Download gff for
BS05670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18815-PB | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:46 Download gff for
BS05670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18815-PC | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:42:23 Download gff for
BS05670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18815-RA | 197..865 | 2..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:21:58 Download gff for
BS05670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18815-RA | 197..865 | 2..673 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:21:58 Download gff for
BS05670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11628439..11628501 | 2..64 | 92 | -> | Plus |
3L | 11628563..11628594 | 65..96 | 100 | -> | Plus |
3L | 11628961..11629504 | 97..640 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:42:23 Download gff for
BS05670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11621539..11621601 | 2..64 | 92 | -> | Plus |
arm_3L | 11621663..11621694 | 65..96 | 100 | -> | Plus |
arm_3L | 11622061..11622604 | 97..640 | 100 | -> | Plus |
BS05670.complete Sequence
683 bp (683 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635209
> BS05670.complete
GAAGTTATCAGTCGACATGGCTGCGCCGGTCATTGTCGAGGCCACGGTCA
AGCAAACCGCCACGCTGATCTTCATGCACGGCCTGGGTGATACGGGTCAT
GGCTGGAGCAGTGCCCTAGCCGCCATCCGCCCACCTTTCATGAAAGTCAT
CTGCCCCACGGCGCCCACACAGCCCGTTTCGCTGAACGCCGGCTTCCGCA
TGCCGTCGTGGTTTGACCTGAAGACGCTGGACATCGGTGGGCCCGAGGAC
GAGCCGGGCATCCAGTCGGCGCGTGATAGTGTGCACGGTATGATCCAGAA
GGAGATTAGCGCTGGGATTCCGGCCAATCGCATTGTCCTGGGCGGATTCT
CGCAGGGCGGAGCCTTGGCACTGTACTCGGCACTCACGTACGATCAGCCG
CTGGCCGGCGTGGTGGCCCTATCCTGTTGGCTGCCGCTGCACAAGCAGTT
CCCAGGCGCCAAGGTGAACAGCGATGATGTGCCGATTTTCCAGGCGCATG
GCGACTACGATCCCGTGGTGCCGTACAAATTCGGCCAGCTGAGCGCCAGC
CTGCTCAAGTCGTTCATGAAGAATGTGACGTTCAAGACGTACAGTGGACT
ATCGCACTCGTCGTCCGACGACGAAATGGATGACGTCAAGGACATCATCA
GTAAATGGGTAAACTAAAAGCTTTCTAGACCAT
BS05670.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18815-RC | 651 | CG18815-PC | 1..651 | 17..667 | 3255 | 100 | Plus |
CG18815-RB | 651 | CG18815-PB | 1..651 | 17..667 | 3255 | 100 | Plus |
CG18815-RA | 651 | CG18815-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18815-RC | 1181 | CG18815-RC | 143..796 | 14..667 | 3270 | 100 | Plus |
CG18815-RB | 1237 | CG18815-RB | 199..852 | 14..667 | 3270 | 100 | Plus |
CG18815-RA | 1247 | CG18815-RA | 209..862 | 14..667 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11628960..11629505 | 96..641 | 2730 | 100 | Plus |
3L | 28110227 | 3L | 11628451..11628505 | 14..68 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:41:37 has no hits.
BS05670.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:41 Download gff for
BS05670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18815-RC | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:26 Download gff for
BS05670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18815-RC | 131..799 | 2..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:06 Download gff for
BS05670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18815-RA | 212..860 | 17..665 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:41 Download gff for
BS05670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18815-RC | 131..799 | 2..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:40 Download gff for
BS05670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18815-RA | 212..860 | 17..665 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:40 Download gff for
BS05670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11628454..11628501 | 17..64 | 100 | -> | Plus |
3L | 11628563..11628594 | 65..96 | 100 | -> | Plus |
3L | 11628961..11629504 | 97..640 | 100 | -> | Plus |
3L | 11629581..11629605 | 641..665 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:06 Download gff for
BS05670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11621663..11621694 | 65..96 | 100 | -> | Plus |
arm_3L | 11621554..11621601 | 17..64 | 100 | -> | Plus |
arm_3L | 11622061..11622604 | 97..640 | 100 | -> | Plus |
arm_3L | 11622681..11622705 | 641..665 | 100 | | Plus |
BS05670.pep Sequence
Translation from 16 to 666
> BS05670.pep
MAAPVIVEATVKQTATLIFMHGLGDTGHGWSSALAAIRPPFMKVICPTAP
TQPVSLNAGFRMPSWFDLKTLDIGGPEDEPGIQSARDSVHGMIQKEISAG
IPANRIVLGGFSQGGALALYSALTYDQPLAGVVALSCWLPLHKQFPGAKV
NSDDVPIFQAHGDYDPVVPYKFGQLSASLLKSFMKNVTFKTYSGLSHSSS
DDEMDDVKDIISKWVN*
BS05670.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18815-PC | 216 | CG18815-PC | 1..216 | 1..216 | 1134 | 100 | Plus |
CG18815-PB | 216 | CG18815-PB | 1..216 | 1..216 | 1134 | 100 | Plus |
CG18815-PA | 216 | CG18815-PA | 1..216 | 1..216 | 1134 | 100 | Plus |
CG18815-PD | 221 | CG18815-PD | 1..214 | 1..214 | 1124 | 100 | Plus |
CG18815-PE | 232 | CG18815-PE | 1..214 | 1..214 | 1124 | 100 | Plus |