Clone BS05670 Report

Search the DGRC for BS05670

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG18815-RA
Protein status:BS05670.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05670.3prime Sequence

681 bp (680 high quality bases) assembled on 2005-12-02

> BS05670.3prime
ATGGTCTAGAAAGCTTTTAGTTTACCCATTTACTGATGATGTCCTTGACG
TCATCCATTTCGTCGTCGGACGACGAGTGCGATAGTCCACTGTACGTCTT
GAACGTCACATTCTTCATGAACGACTTGAGCAGGCTGGCGCTCAGCTGGC
CGAATTTGTACGGCACCACGGGATCGTAGTCGCCATGCGCCTGGAAAATC
GGCACATCATCGCTGTTCACCTTGGCGCCTGGGAACTGCTTGTGCAGCGG
CAGCCAACAGGATAGGGCCACCACGCCGGCCAGCGGCTGATCGTACGTGA
GTGCCGAGTACAGTGCCAAGGCTCCGCCCTGCGAGAATCCGCCCAGGACA
ATGCGATTGGCCGGAATCCCAGCGCTAATCTCCTTCTGGATCATACCGTG
CACACTATCACGCGCCGACTGGATGCCCGGCTCGTCCTCGGGCCCACCGA
TGTCCAGCGTCTTCAGGTCAAACCACGACGGCATGCGGAAGCCGGCGTTC
AGCGAAACGGGCTGTGTGGGCGCCGTGGGGCAGATGACTTTCATGAAAGG
TGGGCGGATGGCGGCTAGGGCACTGCTCCAGCCATGACCCGTATCACCCA
GGCCGTGCATGAAGATCAGCGTGGCGGTTTGCTTGACCGTGGCCTCGACA
ATGACCGGCGCAGCCATGTCGACTGATAACT

BS05670.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18815-PA 651 CG18815-RA 1..651 667..17 3255 100 Minus
CG18815-PB 651 CG18815-RB 1..651 667..17 3255 100 Minus
CG18815-PC 651 CG18815-RC 1..651 667..17 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG18815-RC 1181 CG18815-RC 143..796 670..17 3270 100 Minus
CG18815-RB 1237 CG18815-RB 199..852 670..17 3270 100 Minus
CG18815-RA 1247 CG18815-RA 209..862 670..17 3270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11628960..11629505 588..43 2730 100 Minus
3L 28110227 3L 11628451..11628505 670..616 260 98.2 Minus
Blast to na_te.dros performed on 2015-02-11 11:00:22 has no hits.

BS05670.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:33 Download gff for BS05670.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18815-PB 1..651 17..667 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:45 Download gff for BS05670.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18815-PC 1..651 17..667 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:52 Download gff for BS05670.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18815-RA 198..865 11..681 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:00 Download gff for BS05670.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18815-RA 198..865 11..681 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:00 Download gff for BS05670.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11628440..11628501 620..681 91 -> Minus
3L 11628563..11628594 588..619 100 -> Minus
3L 11628961..11629504 44..587 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:52 Download gff for BS05670.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11621540..11621601 620..681 91 -> Minus
arm_3L 11621663..11621694 588..619 100 -> Minus
arm_3L 11622061..11622604 44..587 100 -> Minus

BS05670.5prime Sequence

681 bp (680 high quality bases) assembled on 2005-12-02

> BS05670.5prime
GAAGTTATCAGTCGACATGGCTGCGCCGGTCATTGTCGAGGCCACGGTCA
AGCAAACCGCCACGCTGATCTTCATGCACGGCCTGGGTGATACGGGTCAT
GGCTGGAGCAGTGCCCTAGCCGCCATCCGCCCACCTTTCATGAAAGTCAT
CTGCCCCACGGCGCCCACACAGCCCGTTTCGCTGAACGCCGGCTTCCGCA
TGCCGTCGTGGTTTGACCTGAAGACGCTGGACATCGGTGGGCCCGAGGAC
GAGCCGGGCATCCAGTCGGCGCGTGATAGTGTGCACGGTATGATCCAGAA
GGAGATTAGCGCTGGGATTCCGGCCAATCGCATTGTCCTGGGCGGATTCT
CGCAGGGCGGAGCCTTGGCACTGTACTCGGCACTCACGTACGATCAGCCG
CTGGCCGGCGTGGTGGCCCTATCCTGTTGGCTGCCGCTGCACAAGCAGTT
CCCAGGCGCCAAGGTGAACAGCGATGATGTGCCGATTTTCCAGGCGCATG
GCGACTACGATCCCGTGGTGCCGTACAAATTCGGCCAGCTGAGCGCCAGC
CTGCTCAAGTCGTTCATGAAGAATGTGACGTTCAAGACGTACAGTGGACT
ATCGCACTCGTCGTCCGACGACGAAATGGATGACGTCAAGGACATCATCA
GTAAATGGGTAAACTAAAAGCTTTCTAGACC

BS05670.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG18815-PA 651 CG18815-RA 1..651 17..667 3255 100 Plus
CG18815-PB 651 CG18815-RB 1..651 17..667 3255 100 Plus
CG18815-PC 651 CG18815-RC 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18815-RC 1181 CG18815-RC 143..796 14..667 3270 100 Plus
CG18815-RB 1237 CG18815-RB 199..852 14..667 3270 100 Plus
CG18815-RA 1247 CG18815-RA 209..862 14..667 3270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11628960..11629505 96..641 2730 100 Plus
3L 28110227 3L 11628451..11628505 14..68 260 98.2 Plus
Blast to na_te.dros performed on 2015-02-10 20:47:39 has no hits.

BS05670.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:34 Download gff for BS05670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18815-PB 1..651 17..667 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:46 Download gff for BS05670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18815-PC 1..651 17..667 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:42:23 Download gff for BS05670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18815-RA 197..865 2..673 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:21:58 Download gff for BS05670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18815-RA 197..865 2..673 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:21:58 Download gff for BS05670.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11628439..11628501 2..64 92 -> Plus
3L 11628563..11628594 65..96 100 -> Plus
3L 11628961..11629504 97..640 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:42:23 Download gff for BS05670.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11621539..11621601 2..64 92 -> Plus
arm_3L 11621663..11621694 65..96 100 -> Plus
arm_3L 11622061..11622604 97..640 100 -> Plus

BS05670.complete Sequence

683 bp (683 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635209

> BS05670.complete
GAAGTTATCAGTCGACATGGCTGCGCCGGTCATTGTCGAGGCCACGGTCA
AGCAAACCGCCACGCTGATCTTCATGCACGGCCTGGGTGATACGGGTCAT
GGCTGGAGCAGTGCCCTAGCCGCCATCCGCCCACCTTTCATGAAAGTCAT
CTGCCCCACGGCGCCCACACAGCCCGTTTCGCTGAACGCCGGCTTCCGCA
TGCCGTCGTGGTTTGACCTGAAGACGCTGGACATCGGTGGGCCCGAGGAC
GAGCCGGGCATCCAGTCGGCGCGTGATAGTGTGCACGGTATGATCCAGAA
GGAGATTAGCGCTGGGATTCCGGCCAATCGCATTGTCCTGGGCGGATTCT
CGCAGGGCGGAGCCTTGGCACTGTACTCGGCACTCACGTACGATCAGCCG
CTGGCCGGCGTGGTGGCCCTATCCTGTTGGCTGCCGCTGCACAAGCAGTT
CCCAGGCGCCAAGGTGAACAGCGATGATGTGCCGATTTTCCAGGCGCATG
GCGACTACGATCCCGTGGTGCCGTACAAATTCGGCCAGCTGAGCGCCAGC
CTGCTCAAGTCGTTCATGAAGAATGTGACGTTCAAGACGTACAGTGGACT
ATCGCACTCGTCGTCCGACGACGAAATGGATGACGTCAAGGACATCATCA
GTAAATGGGTAAACTAAAAGCTTTCTAGACCAT

BS05670.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG18815-RC 651 CG18815-PC 1..651 17..667 3255 100 Plus
CG18815-RB 651 CG18815-PB 1..651 17..667 3255 100 Plus
CG18815-RA 651 CG18815-PA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG18815-RC 1181 CG18815-RC 143..796 14..667 3270 100 Plus
CG18815-RB 1237 CG18815-RB 199..852 14..667 3270 100 Plus
CG18815-RA 1247 CG18815-RA 209..862 14..667 3270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11628960..11629505 96..641 2730 100 Plus
3L 28110227 3L 11628451..11628505 14..68 260 98.2 Plus
Blast to na_te.dros performed on 2014-11-26 15:41:37 has no hits.

BS05670.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:41 Download gff for BS05670.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RC 1..651 17..667 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:26 Download gff for BS05670.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RC 131..799 2..673 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:06 Download gff for BS05670.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RA 212..860 17..665 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:41 Download gff for BS05670.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RC 131..799 2..673 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:40 Download gff for BS05670.complete
Subject Subject Range Query Range Percent Splice Strand
CG18815-RA 212..860 17..665 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:40 Download gff for BS05670.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11628454..11628501 17..64 100 -> Plus
3L 11628563..11628594 65..96 100 -> Plus
3L 11628961..11629504 97..640 100 -> Plus
3L 11629581..11629605 641..665 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:06 Download gff for BS05670.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11621663..11621694 65..96 100 -> Plus
arm_3L 11621554..11621601 17..64 100 -> Plus
arm_3L 11622061..11622604 97..640 100 -> Plus
arm_3L 11622681..11622705 641..665 100   Plus

BS05670.pep Sequence

Translation from 16 to 666

> BS05670.pep
MAAPVIVEATVKQTATLIFMHGLGDTGHGWSSALAAIRPPFMKVICPTAP
TQPVSLNAGFRMPSWFDLKTLDIGGPEDEPGIQSARDSVHGMIQKEISAG
IPANRIVLGGFSQGGALALYSALTYDQPLAGVVALSCWLPLHKQFPGAKV
NSDDVPIFQAHGDYDPVVPYKFGQLSASLLKSFMKNVTFKTYSGLSHSSS
DDEMDDVKDIISKWVN*

BS05670.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG18815-PC 216 CG18815-PC 1..216 1..216 1134 100 Plus
CG18815-PB 216 CG18815-PB 1..216 1..216 1134 100 Plus
CG18815-PA 216 CG18815-PA 1..216 1..216 1134 100 Plus
CG18815-PD 221 CG18815-PD 1..214 1..214 1124 100 Plus
CG18815-PE 232 CG18815-PE 1..214 1..214 1124 100 Plus