Clone Sequence Records
BS05672.3prime Sequence
582 bp (581 high quality bases) assembled on 2005-12-02
> BS05672.3prime
ATGGTCTAGAAAGCTTTTACACGCCGCCGTGATCGCCAGCTCCTGCCGAT
CCTCCTGCTCCTGCTCCGTCTCCTGCTCCTGCCGCATCCACCAGCGATGA
CTGTCCTCCGGCTGGCTGCTGCGGTGGCGGCGGCGGTGGCTGCATGTACT
GTGGGGGATACTGGTACTGTGGCGGCTGCTCCCCGCCTATGAGTCCAAGT
TTATTTGCAATAATGCCCACGACAACCAGGCCAATCACGCCCATGATGAT
CATCATCTTTAAGTTCTGAAGCCAGAATTTCCTCTTGAGCTTGCCCGCCT
GCTGCTCAAACTGCGAGGCACCCTGCTGCAAGGCATCGGCACGGTCGTCC
AGCTCCGACAGCTTGCTGTCGCGCTCCAGCACCTTCTCCACGTTCGTGCG
CATGATGTCCACGACCTCATCGACCTGCGCCTGCGTCTGCTGCAGACGCT
TCTGTGCCGCGATCTGCTGCGGATTGTGTGGTCCGCCCACAATCTCGCCA
TCGCCGCCCTCTCCGGCCGGGGCTCCGGCATTGGGTGGTGCATCGCCAGC
TGGTGCAGCGTCCGCCATGTCGACTGATAACT
BS05672.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17248-PA | 552 | n-syb-RA | 1..552 | 568..17 | 2760 | 100 | Minus |
CG17248-PC | 552 | n-syb-RC | 1..552 | 568..17 | 2760 | 100 | Minus |
CG17248-PE | 579 | n-syb-RE | 30..579 | 566..17 | 2750 | 100 | Minus |
CG17248-PB | 579 | n-syb-RB | 30..579 | 566..17 | 2750 | 100 | Minus |
CG17248-PD | 666 | n-syb-RD | 30..392 | 566..204 | 1815 | 100 | Minus |
CG17248-PD | 666 | n-syb-RD | 479..666 | 204..17 | 940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nSyb-RF | 1109 | CG17248-RF | 483..1035 | 569..17 | 2765 | 100 | Minus |
nSyb-RA | 1387 | CG17248-RA | 480..1032 | 569..17 | 2765 | 100 | Minus |
nSyb-RG | 3027 | CG17248-RG | 559..1108 | 566..17 | 2750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1632267..1632454 | 17..204 | 940 | 100 | Plus |
3L | 28110227 | 3L | 1635301..1635461 | 257..417 | 805 | 100 | Plus |
3L | 28110227 | 3L | 1635532..1635684 | 414..566 | 765 | 100 | Plus |
2R | 25286936 | 2R | 10250908..10251119 | 234..445 | 295 | 75.9 | Plus |
3L | 28110227 | 3L | 1635182..1635239 | 201..258 | 275 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:48:23 has no hits.
BS05672.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:38 Download gff for
BS05672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-PC | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:51 Download gff for
BS05672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17248-PC | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:29:06 Download gff for
BS05672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-RA | 474..1038 | 9..576 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:40 Download gff for
BS05672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nSyb-RA | 474..1038 | 9..576 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:40 Download gff for
BS05672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1632261..1632454 | 9..204 | 97 | <- | Plus |
3L | 1635186..1635237 | 205..256 | 100 | <- | Plus |
3L | 1635301..1635459 | 257..415 | 100 | <- | Plus |
3L | 1635534..1635691 | 416..577 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:29:06 Download gff for
BS05672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1632261..1632454 | 9..204 | 97 | <- | Plus |
arm_3L | 1635186..1635237 | 205..256 | 100 | <- | Plus |
arm_3L | 1635301..1635459 | 257..415 | 100 | <- | Plus |
arm_3L | 1635534..1635691 | 416..577 | 96 | | Plus |
BS05672.5prime Sequence
582 bp (581 high quality bases) assembled on 2005-12-02
> BS05672.5prime
GAAGTTATCAGTCGACATGGCGGACGCTGCACCAGCTGGCGATGCACCAC
CCAATGCCGGAGCCCCGGCCGGAGAGGGCGGCGATGGCGAGATTGTGGGC
GGACCACACAATCCGCAGCAGATCGCGGCACAGAAGCGTCTGCAGCAGAC
GCAGGCGCAGGTCGATGAGGTCGTGGACATCATGCGCACGAACGTGGAGA
AGGTGCTGGAGCGCGACAGCAAGCTGTCGGAGCTGGACGACCGTGCCGAT
GCCTTGCAGCAGGGTGCCTCGCAGTTTGAGCAGCAGGCGGGCAAGCTCAA
GAGGAAATTCTGGCTTCAGAACTTAAAGATGATGATCATCATGGGCGTGA
TTGGCCTGGTTGTCGTGGGCATTATTGCAAATAAACTTGGACTCATAGGC
GGGGAGCAGCCGCCACAGTACCAGTATCCCCCACAGTACATGCAGCCACC
GCCGCCGCCACCGCAGCAGCCAGCCGGAGGACAGTCATCGCTGGTGGATG
CGGCAGGAGCAGGAGACGGAGCAGGAGCAGGAGGATCGGCAGGAGCTGGC
GATCACGGCGGCGTGTAAAAGCTTTCTAGACC
BS05672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17248-PA | 552 | n-syb-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
CG17248-PC | 552 | n-syb-RC | 1..552 | 17..568 | 2760 | 100 | Plus |
CG17248-PE | 579 | n-syb-RE | 30..579 | 19..568 | 2750 | 100 | Plus |
CG17248-PB | 579 | n-syb-RB | 30..579 | 19..568 | 2750 | 100 | Plus |
CG17248-PD | 666 | n-syb-RD | 30..392 | 19..381 | 1815 | 100 | Plus |
CG17248-PD | 666 | n-syb-RD | 479..666 | 381..568 | 940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nSyb-RF | 1109 | CG17248-RF | 483..1035 | 16..568 | 2765 | 100 | Plus |
nSyb-RA | 1387 | CG17248-RA | 480..1032 | 16..568 | 2765 | 100 | Plus |
nSyb-RG | 3027 | CG17248-RG | 559..1108 | 19..568 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1632267..1632454 | 568..381 | 940 | 100 | Minus |
3L | 28110227 | 3L | 1635301..1635461 | 328..168 | 805 | 100 | Minus |
3L | 28110227 | 3L | 1635532..1635684 | 171..19 | 765 | 100 | Minus |
2R | 25286936 | 2R | 10250908..10251119 | 351..140 | 295 | 75.9 | Minus |
3L | 28110227 | 3L | 1635182..1635239 | 384..327 | 275 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:10:40 has no hits.
BS05672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:39 Download gff for
BS05672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-PC | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:52 Download gff for
BS05672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17248-PC | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:48:15 Download gff for
BS05672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-RA | 474..1038 | 9..576 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:39 Download gff for
BS05672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nSyb-RA | 474..1038 | 9..576 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:39 Download gff for
BS05672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1632261..1632454 | 381..576 | 97 | <- | Minus |
3L | 1635186..1635237 | 329..380 | 100 | <- | Minus |
3L | 1635301..1635459 | 170..328 | 100 | <- | Minus |
3L | 1635534..1635691 | 8..169 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:48:15 Download gff for
BS05672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1632261..1632454 | 381..576 | 97 | <- | Minus |
arm_3L | 1635186..1635237 | 329..380 | 100 | <- | Minus |
arm_3L | 1635301..1635459 | 170..328 | 100 | <- | Minus |
arm_3L | 1635534..1635691 | 8..169 | 96 | | Minus |
BS05672.complete Sequence
584 bp (584 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635210
> BS05672.complete
GAAGTTATCAGTCGACATGGCGGACGCTGCACCAGCTGGCGATGCACCAC
CCAATGCCGGAGCCCCGGCCGGAGAGGGCGGCGATGGCGAGATTGTGGGC
GGACCACACAATCCGCAGCAGATCGCGGCACAGAAGCGTCTGCAGCAGAC
GCAGGCGCAGGTCGATGAGGTCGTGGACATCATGCGCACGAACGTGGAGA
AGGTGCTGGAGCGCGACAGCAAGCTGTCGGAGCTGGACGACCGTGCCGAT
GCCTTGCAGCAGGGTGCCTCGCAGTTTGAGCAGCAGGCGGGCAAGCTCAA
GAGGAAATTCTGGCTTCAGAACTTAAAGATGATGATCATCATGGGCGTGA
TTGGCCTGGTTGTCGTGGGCATTATTGCAAATAAACTTGGACTCATAGGC
GGGGAGCAGCCGCCACAGTACCAGTATCCCCCACAGTACATGCAGCCACC
GCCGCCGCCACCGCAGCAGCCAGCCGGAGGACAGTCATCGCTGGTGGATG
CGGCAGGAGCAGGAGACGGAGCAGGAGCAGGAGGATCGGCAGGAGCTGGC
GATCACGGCGGCGTGTAAAAGCTTTCTAGACCAT
BS05672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:50:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nSyb-RF | 552 | CG17248-PF | 1..552 | 17..568 | 2760 | 100 | Plus |
nSyb-RA | 552 | CG17248-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
nSyb-RG | 579 | CG17248-PG | 30..579 | 19..568 | 2750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nSyb-RF | 1109 | CG17248-RF | 483..1035 | 16..568 | 2765 | 100 | Plus |
nSyb-RA | 1387 | CG17248-RA | 480..1032 | 16..568 | 2765 | 100 | Plus |
nSyb-RG | 3027 | CG17248-RG | 559..1108 | 19..568 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1632267..1632454 | 568..381 | 940 | 100 | Minus |
3L | 28110227 | 3L | 1635301..1635461 | 328..168 | 805 | 100 | Minus |
3L | 28110227 | 3L | 1635532..1635684 | 171..19 | 765 | 100 | Minus |
2R | 25286936 | 2R | 10250908..10251119 | 351..140 | 295 | 75.9 | Minus |
3L | 28110227 | 3L | 1635182..1635239 | 384..327 | 275 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:50:25 has no hits.
BS05672.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:23 Download gff for
BS05672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-RC | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:02 Download gff for
BS05672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-RA | 489..1053 | 9..576 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:52 Download gff for
BS05672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-RA | 481..1030 | 17..566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:23 Download gff for
BS05672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-RC | 450..1014 | 9..576 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:51 Download gff for
BS05672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nSyb-RA | 481..1030 | 17..566 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:51 Download gff for
BS05672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1632269..1632454 | 381..566 | 100 | <- | Minus |
3L | 1635186..1635237 | 329..380 | 100 | <- | Minus |
3L | 1635301..1635459 | 170..328 | 100 | <- | Minus |
3L | 1635534..1635686 | 17..169 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:52 Download gff for
BS05672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1632269..1632454 | 381..566 | 100 | <- | Minus |
arm_3L | 1635186..1635237 | 329..380 | 100 | <- | Minus |
arm_3L | 1635301..1635459 | 170..328 | 100 | <- | Minus |
arm_3L | 1635534..1635686 | 17..169 | 99 | | Minus |
BS05672.pep Sequence
Translation from 16 to 567
> BS05672.pep
MADAAPAGDAPPNAGAPAGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVD
EVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWL
QNLKMMIIMGVIGLVVVGIIANKLGLIGGEQPPQYQYPPQYMQPPPPPPQ
QPAGGQSSLVDAAGAGDGAGAGGSAGAGDHGGV*
BS05672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nSyb-PF | 183 | CG17248-PF | 1..183 | 1..183 | 951 | 100 | Plus |
nSyb-PA | 183 | CG17248-PA | 1..183 | 1..183 | 951 | 100 | Plus |
nSyb-PG | 192 | CG17248-PG | 11..192 | 2..183 | 946 | 100 | Plus |
nSyb-PE | 192 | CG17248-PE | 11..192 | 2..183 | 946 | 100 | Plus |
nSyb-PJ | 206 | CG17248-PJ | 1..158 | 1..150 | 626 | 84.2 | Plus |