Clone BS05672 Report

Search the DGRC for BS05672

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptnSyb-RA
Protein status:BS05672.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05672.3prime Sequence

582 bp (581 high quality bases) assembled on 2005-12-02

> BS05672.3prime
ATGGTCTAGAAAGCTTTTACACGCCGCCGTGATCGCCAGCTCCTGCCGAT
CCTCCTGCTCCTGCTCCGTCTCCTGCTCCTGCCGCATCCACCAGCGATGA
CTGTCCTCCGGCTGGCTGCTGCGGTGGCGGCGGCGGTGGCTGCATGTACT
GTGGGGGATACTGGTACTGTGGCGGCTGCTCCCCGCCTATGAGTCCAAGT
TTATTTGCAATAATGCCCACGACAACCAGGCCAATCACGCCCATGATGAT
CATCATCTTTAAGTTCTGAAGCCAGAATTTCCTCTTGAGCTTGCCCGCCT
GCTGCTCAAACTGCGAGGCACCCTGCTGCAAGGCATCGGCACGGTCGTCC
AGCTCCGACAGCTTGCTGTCGCGCTCCAGCACCTTCTCCACGTTCGTGCG
CATGATGTCCACGACCTCATCGACCTGCGCCTGCGTCTGCTGCAGACGCT
TCTGTGCCGCGATCTGCTGCGGATTGTGTGGTCCGCCCACAATCTCGCCA
TCGCCGCCCTCTCCGGCCGGGGCTCCGGCATTGGGTGGTGCATCGCCAGC
TGGTGCAGCGTCCGCCATGTCGACTGATAACT

BS05672.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17248-PA 552 n-syb-RA 1..552 568..17 2760 100 Minus
CG17248-PC 552 n-syb-RC 1..552 568..17 2760 100 Minus
CG17248-PE 579 n-syb-RE 30..579 566..17 2750 100 Minus
CG17248-PB 579 n-syb-RB 30..579 566..17 2750 100 Minus
CG17248-PD 666 n-syb-RD 30..392 566..204 1815 100 Minus
CG17248-PD 666 n-syb-RD 479..666 204..17 940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
nSyb-RF 1109 CG17248-RF 483..1035 569..17 2765 100 Minus
nSyb-RA 1387 CG17248-RA 480..1032 569..17 2765 100 Minus
nSyb-RG 3027 CG17248-RG 559..1108 566..17 2750 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1632267..1632454 17..204 940 100 Plus
3L 28110227 3L 1635301..1635461 257..417 805 100 Plus
3L 28110227 3L 1635532..1635684 414..566 765 100 Plus
2R 25286936 2R 10250908..10251119 234..445 295 75.9 Plus
3L 28110227 3L 1635182..1635239 201..258 275 98.3 Plus
Blast to na_te.dros performed on 2015-02-01 08:48:23 has no hits.

BS05672.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:38 Download gff for BS05672.3prime
Subject Subject Range Query Range Percent Splice Strand
n-syb-PC 1..552 17..568 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:51 Download gff for BS05672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17248-PC 1..552 17..568 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:29:06 Download gff for BS05672.3prime
Subject Subject Range Query Range Percent Splice Strand
n-syb-RA 474..1038 9..576 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:40 Download gff for BS05672.3prime
Subject Subject Range Query Range Percent Splice Strand
nSyb-RA 474..1038 9..576 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:40 Download gff for BS05672.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1632261..1632454 9..204 97 <- Plus
3L 1635186..1635237 205..256 100 <- Plus
3L 1635301..1635459 257..415 100 <- Plus
3L 1635534..1635691 416..577 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:29:06 Download gff for BS05672.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1632261..1632454 9..204 97 <- Plus
arm_3L 1635186..1635237 205..256 100 <- Plus
arm_3L 1635301..1635459 257..415 100 <- Plus
arm_3L 1635534..1635691 416..577 96   Plus

BS05672.5prime Sequence

582 bp (581 high quality bases) assembled on 2005-12-02

> BS05672.5prime
GAAGTTATCAGTCGACATGGCGGACGCTGCACCAGCTGGCGATGCACCAC
CCAATGCCGGAGCCCCGGCCGGAGAGGGCGGCGATGGCGAGATTGTGGGC
GGACCACACAATCCGCAGCAGATCGCGGCACAGAAGCGTCTGCAGCAGAC
GCAGGCGCAGGTCGATGAGGTCGTGGACATCATGCGCACGAACGTGGAGA
AGGTGCTGGAGCGCGACAGCAAGCTGTCGGAGCTGGACGACCGTGCCGAT
GCCTTGCAGCAGGGTGCCTCGCAGTTTGAGCAGCAGGCGGGCAAGCTCAA
GAGGAAATTCTGGCTTCAGAACTTAAAGATGATGATCATCATGGGCGTGA
TTGGCCTGGTTGTCGTGGGCATTATTGCAAATAAACTTGGACTCATAGGC
GGGGAGCAGCCGCCACAGTACCAGTATCCCCCACAGTACATGCAGCCACC
GCCGCCGCCACCGCAGCAGCCAGCCGGAGGACAGTCATCGCTGGTGGATG
CGGCAGGAGCAGGAGACGGAGCAGGAGCAGGAGGATCGGCAGGAGCTGGC
GATCACGGCGGCGTGTAAAAGCTTTCTAGACC

BS05672.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17248-PA 552 n-syb-RA 1..552 17..568 2760 100 Plus
CG17248-PC 552 n-syb-RC 1..552 17..568 2760 100 Plus
CG17248-PE 579 n-syb-RE 30..579 19..568 2750 100 Plus
CG17248-PB 579 n-syb-RB 30..579 19..568 2750 100 Plus
CG17248-PD 666 n-syb-RD 30..392 19..381 1815 100 Plus
CG17248-PD 666 n-syb-RD 479..666 381..568 940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
nSyb-RF 1109 CG17248-RF 483..1035 16..568 2765 100 Plus
nSyb-RA 1387 CG17248-RA 480..1032 16..568 2765 100 Plus
nSyb-RG 3027 CG17248-RG 559..1108 19..568 2750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1632267..1632454 568..381 940 100 Minus
3L 28110227 3L 1635301..1635461 328..168 805 100 Minus
3L 28110227 3L 1635532..1635684 171..19 765 100 Minus
2R 25286936 2R 10250908..10251119 351..140 295 75.9 Minus
3L 28110227 3L 1635182..1635239 384..327 275 98.3 Minus
Blast to na_te.dros performed on 2015-02-10 22:10:40 has no hits.

BS05672.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:39 Download gff for BS05672.5prime
Subject Subject Range Query Range Percent Splice Strand
n-syb-PC 1..552 17..568 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:52 Download gff for BS05672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17248-PC 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:48:15 Download gff for BS05672.5prime
Subject Subject Range Query Range Percent Splice Strand
n-syb-RA 474..1038 9..576 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:39 Download gff for BS05672.5prime
Subject Subject Range Query Range Percent Splice Strand
nSyb-RA 474..1038 9..576 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:39 Download gff for BS05672.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1632261..1632454 381..576 97 <- Minus
3L 1635186..1635237 329..380 100 <- Minus
3L 1635301..1635459 170..328 100 <- Minus
3L 1635534..1635691 8..169 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:48:15 Download gff for BS05672.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1632261..1632454 381..576 97 <- Minus
arm_3L 1635186..1635237 329..380 100 <- Minus
arm_3L 1635301..1635459 170..328 100 <- Minus
arm_3L 1635534..1635691 8..169 96   Minus

BS05672.complete Sequence

584 bp (584 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635210

> BS05672.complete
GAAGTTATCAGTCGACATGGCGGACGCTGCACCAGCTGGCGATGCACCAC
CCAATGCCGGAGCCCCGGCCGGAGAGGGCGGCGATGGCGAGATTGTGGGC
GGACCACACAATCCGCAGCAGATCGCGGCACAGAAGCGTCTGCAGCAGAC
GCAGGCGCAGGTCGATGAGGTCGTGGACATCATGCGCACGAACGTGGAGA
AGGTGCTGGAGCGCGACAGCAAGCTGTCGGAGCTGGACGACCGTGCCGAT
GCCTTGCAGCAGGGTGCCTCGCAGTTTGAGCAGCAGGCGGGCAAGCTCAA
GAGGAAATTCTGGCTTCAGAACTTAAAGATGATGATCATCATGGGCGTGA
TTGGCCTGGTTGTCGTGGGCATTATTGCAAATAAACTTGGACTCATAGGC
GGGGAGCAGCCGCCACAGTACCAGTATCCCCCACAGTACATGCAGCCACC
GCCGCCGCCACCGCAGCAGCCAGCCGGAGGACAGTCATCGCTGGTGGATG
CGGCAGGAGCAGGAGACGGAGCAGGAGCAGGAGGATCGGCAGGAGCTGGC
GATCACGGCGGCGTGTAAAAGCTTTCTAGACCAT

BS05672.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
nSyb-RF 552 CG17248-PF 1..552 17..568 2760 100 Plus
nSyb-RA 552 CG17248-PA 1..552 17..568 2760 100 Plus
nSyb-RG 579 CG17248-PG 30..579 19..568 2750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
nSyb-RF 1109 CG17248-RF 483..1035 16..568 2765 100 Plus
nSyb-RA 1387 CG17248-RA 480..1032 16..568 2765 100 Plus
nSyb-RG 3027 CG17248-RG 559..1108 19..568 2750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1632267..1632454 568..381 940 100 Minus
3L 28110227 3L 1635301..1635461 328..168 805 100 Minus
3L 28110227 3L 1635532..1635684 171..19 765 100 Minus
2R 25286936 2R 10250908..10251119 351..140 295 75.9 Minus
3L 28110227 3L 1635182..1635239 384..327 275 98.3 Minus
Blast to na_te.dros performed on 2014-11-27 12:50:25 has no hits.

BS05672.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:23 Download gff for BS05672.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RC 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:02 Download gff for BS05672.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RA 489..1053 9..576 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:52 Download gff for BS05672.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RA 481..1030 17..566 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:23 Download gff for BS05672.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RC 450..1014 9..576 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:51 Download gff for BS05672.complete
Subject Subject Range Query Range Percent Splice Strand
nSyb-RA 481..1030 17..566 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:51 Download gff for BS05672.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1632269..1632454 381..566 100 <- Minus
3L 1635186..1635237 329..380 100 <- Minus
3L 1635301..1635459 170..328 100 <- Minus
3L 1635534..1635686 17..169 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:52 Download gff for BS05672.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1632269..1632454 381..566 100 <- Minus
arm_3L 1635186..1635237 329..380 100 <- Minus
arm_3L 1635301..1635459 170..328 100 <- Minus
arm_3L 1635534..1635686 17..169 99   Minus

BS05672.pep Sequence

Translation from 16 to 567

> BS05672.pep
MADAAPAGDAPPNAGAPAGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVD
EVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWL
QNLKMMIIMGVIGLVVVGIIANKLGLIGGEQPPQYQYPPQYMQPPPPPPQ
QPAGGQSSLVDAAGAGDGAGAGGSAGAGDHGGV*

BS05672.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
nSyb-PF 183 CG17248-PF 1..183 1..183 951 100 Plus
nSyb-PA 183 CG17248-PA 1..183 1..183 951 100 Plus
nSyb-PG 192 CG17248-PG 11..192 2..183 946 100 Plus
nSyb-PE 192 CG17248-PE 11..192 2..183 946 100 Plus
nSyb-PJ 206 CG17248-PJ 1..158 1..150 626 84.2 Plus