Clone BS05673 Report

Search the DGRC for BS05673

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG14997-RA
Protein status:BS05673.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05673.3prime Sequence

911 bp (787 high quality bases) assembled on 2005-12-02

> BS05673.3prime
ATGGTCTAGAAAGCTTCTATTGCTTTTTATTAAACTTTAGCACTGAGAAA
ATTTTCCGCATTAGTGCCGGTCCGTTCCAGTAGCCGTTCATCATCAGCTT
CCAGTAGAGCACCGGCATCAGCTCCTTCTTCATAAAGAACATGGAGTACC
TCTCCTTGGACTGGTCCAATGGAAAGGTCTCCACGGGGGTGAGGTTGTAA
TCAAACTCAGCCAGGATGCAGGAGCTGTAGCCGGTGACGATGGGGCAGGA
CGAGTATCCATCGTAGATATCCGTTGGGGCTTTGCCCTCGATCGCCGCCA
TTACGTTTTTGAACACAACCGGTGATTGGGCGGCTGCCGCCGCGGCCGTC
TTCGAGTTGGGACTGGACGCCGAATCGCCGATGGCGAACACGTTGCTGTA
CTTGTTGTGCTGCAGCGTCAACTGGTCGACGTCCACAAAGCCAGTGGGGG
TTACCAGTTTCTTGCAGTTGGCCACCACATCCGGAGTGCTCATCGGCGGA
GTCACATGAAGCATGGAGTACGTTTCCTCATAGTGAACTCCTGGTTTGGC
GAGATCCTCGAACACGGCTATATTATCTTTATGTCTCACTTCAACGAGAT
TTCTTTGAACATTAAGCGTGATATTTCTCCTCTTGATCAGTTTCATCAGG
GCCTCTGCGTAATGCTTAACACCAAAAATCACGGGAAGCGATGTATTGTA
GATGATATTGACGTTGTCGCGACGACCCATCTTCCTAAAGTAGTGCTCAG
ATATATAGGCGATTTTCTGCGGTGCACCTGCACACTTAATGGGACAATTG
GGAAACGTGAATATAGCATTTCCTTTGTTGGTCCTGCGCAGACATTCGTA
CACATGATCCACGTACTTGGGCGAGTAGATGGAGCAAACATTACTGTCGG
GGGTCTCCAGG

BS05673.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-PB 1374 CG14997-RB 480..1374 911..17 4475 100 Minus
CG14997-PA 1374 CG14997-RA 480..1374 911..17 4475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-RA 1605 CG14997-RA 568..1462 911..17 4475 100 Minus
CG14997-RB 1676 CG14997-RB 639..1533 911..17 4475 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4242141..4242460 336..17 1600 100 Minus
3L 28110227 3L 4241492..4241703 732..521 1060 100 Minus
3L 28110227 3L 4241903..4242090 521..334 940 100 Minus
3L 28110227 3L 4241255..4241435 911..731 905 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:03:08 has no hits.

BS05673.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:40 Download gff for BS05673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-PB 480..1374 17..911 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:54 Download gff for BS05673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-PA 480..1374 17..911 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:59:47 Download gff for BS05673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-RB 639..1533 17..911 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:58 Download gff for BS05673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-RB 639..1533 17..911 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:58 Download gff for BS05673.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4241904..4242090 334..520 100 -> Minus
3L 4242144..4242460 17..333 100   Minus
3L 4241255..4241435 731..911 100 -> Minus
3L 4241494..4241703 521..730 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:59:47 Download gff for BS05673.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4241255..4241435 731..911 100 -> Minus
arm_3L 4241494..4241703 521..730 100 -> Minus
arm_3L 4241904..4242090 334..520 100 -> Minus
arm_3L 4242144..4242460 17..333 100   Minus

BS05673.5prime Sequence

778 bp (770 high quality bases) assembled on 2005-12-02

> BS05673.5prime
GAAGTTATCAGTCGACATGAACCGTCGCCTTCCAGGAACCATCAGCCAGT
GCCAGAAGCTTCTCCTAGCCACCCACAACCATGCTCCAACGGCCTTCTCC
ACCAGATTCCTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAATGCCA
AGTGCTGGTTGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCGCCAAGT
TGTCCTCACGTTTGGGCAGCGACAAGGTGGTCGTCCTGGAACCGGAAGAT
AAACATTACTACCAACCCATGTTCACCCTAATAGGAGGTGGTATGAAGAG
ATTGGATCAGAGCCACCGCCAAATGGCCGATGTGCTGCCCACAAAGGCCA
AATGGGTGAAGGAGAAGGCGCTGGAGTTCGATCCGGATAATAATACGGTT
AGCACTTCTGGTGGCAAGACCATCAAGTACGACTTCCTGATCATCGCCAC
CGGACTGCAGCTCAATTATGGAAAGATACCTGGCCTGGTGGAGGCCCTGG
AGACCCCCGACAGTAATGTTTGCTCCATCTACTCGCCCAAGTACGTGGAT
CATGTGTACGAATGTCTGCGCAGGACCAACAAAGGAAATGCTATATTCAC
GTTTCCCAATTGTCCCATTAAGTGTGCAGGTGCACCGCAGAAAATCGCCT
ATATATCTGAGCACTACTTTAGGAAGATGGGTCGTCGCGACAACGTCAAT
ATCATCTACAATACATCGCTTCCCGTGATTTTTGGTGTTAAGCATTACGC
AGAGGCCCTGATGAAACTGATCAAGAGG

BS05673.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-PB 1374 CG14997-RB 1..762 17..778 3810 100 Plus
CG14997-PA 1374 CG14997-RA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-RA 1605 CG14997-RA 89..850 17..778 3810 100 Plus
CG14997-RB 1676 CG14997-RB 160..921 17..778 3810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4240952..4241180 251..479 1130 99.6 Plus
3L 28110227 3L 4241233..4241435 474..676 1015 100 Plus
3L 28110227 3L 4240396..4240523 17..144 640 100 Plus
3L 28110227 3L 4240786..4240891 145..250 530 100 Plus
3L 28110227 3L 4241492..4241595 675..778 520 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:39:24 has no hits.

BS05673.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:41 Download gff for BS05673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-PB 1..762 17..778 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:55 Download gff for BS05673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-PA 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:16:52 Download gff for BS05673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-RB 158..921 13..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:03 Download gff for BS05673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-RB 158..921 13..778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:03 Download gff for BS05673.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4240394..4240523 13..144 98 -> Plus
3L 4240786..4240891 145..250 100 -> Plus
3L 4240952..4241176 251..475 100 -> Plus
3L 4241235..4241435 476..676 100 -> Plus
3L 4241494..4241595 677..778 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:16:52 Download gff for BS05673.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4241494..4241595 677..778 100   Plus
arm_3L 4240394..4240523 13..144 98 -> Plus
arm_3L 4240786..4240891 145..250 100 -> Plus
arm_3L 4240952..4241176 251..475 100 -> Plus
arm_3L 4241235..4241435 476..676 100 -> Plus

BS05673.complete Sequence

1406 bp (1406 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ638785

> BS05673.complete
GAAGTTATCAGTCGACATGAACCGTCGCCTTCCAGGAACCATCAGCCAGT
GCCAGAAGCTTCTCCTAGCCACCCACAACCATGCTCCAACGGCCTTCTCC
ACCAGATTCCTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAATGCCA
AGTGCTGGTTGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCGCCAAGT
TGTCCTCACGTTTGGGCAGCGACAAGGTGGTCGTCCTGGAACCGGAAGAT
AAACATTACTACCAACCCATGTTCACCCTAATAGGAGGTGGTATGAAGAG
ATTGGATCAGAGCCACCGCCAAATGGCCGATGTGCTGCCCACAAAGGCCA
AATGGGTGAAGGAGAAGGCGCTGGAGTTCGATCCGGATAATAATACGGTT
AGCACTTCTGGTGGCAAGACCATCAAGTACGACTTCCTGATCATCGCCAC
CGGACTGCAGCTCAATTATGGAAAGATACCTGGCCTGGTGGAGGCCCTGG
AGACCCCCGACAGTAATGTTTGCTCCATCTACTCGCCCAAGTACGTGGAT
CATGTGTACGAATGTCTGCGCAGGACCAACAAAGGAAATGCTATATTCAC
GTTTCCCAATTGTCCCATTAAGTGTGCAGGTGCACCGCAGAAAATCGCCT
ATATATCTGAGCACTACTTTAGGAAGATGGGTCGTCGCGACAACGTCAAT
ATCATCTACAATACATCGCTTCCCGTGATTTTTGGTGTTAAGCATTACGC
AGAGGCCCTGATGAAACTGATCAAGAGGAGAAATATCACGCTTAATGTTC
AAAGAAATCTCGTTGAAGTGAGACATAAAGATAATATAGCCGTGTTCGAG
GATCTCGCCAAACCAGGAGTTCACTATGAGGAAACGTACTCCATGCTTCA
TGTGACTCCGCCGATGAGCACTCCGGATGTGGTGGCCAACTGCAAGAAAC
TGGTAACCCCCACTGGCTTTGTGGACGTCGACCAGTTGACGCTGCAGCAC
AACAAGTACAGCAACGTGTTCGCCATCGGCGATTCGGCGTCCAGTCCCAA
CTCGAAGACGGCCGCGGCGGCAGCCGCCCAATCACCGGTTGTGTTCAAAA
ACGTAATGGCGGCGATCGAGGGCAAAGCCCCAACGGATATCTACGATGGA
TACTCGTCCTGCCCCATCGTCACCGGCTACAGCTCCTGCATCCTGGCTGA
GTTTGATTACAACCTCACCCCCGTGGAGACCTTTCCATTGGACCAGTCCA
AGGAGAGGTACTCCATGTTCTTTATGAAGAAGGAGCTGATGCCGGTGCTC
TACTGGAAGCTGATGATGAACGGCTACTGGAACGGACCGGCACTAATGCG
GAAAATTTTCTCAGTGCTAAAGTTTAATAAAAAGCAATAGAAGCTTTCTA
GACCAT

BS05673.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-RA 1374 CG14997-PA 1..1374 17..1390 6870 100 Plus
CG14997-RB 1374 CG14997-PB 1..1374 17..1390 6870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-RA 1605 CG14997-RA 89..1462 17..1390 6870 100 Plus
CG14997-RB 1676 CG14997-RB 160..1533 17..1390 6870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4242141..4242460 1071..1390 1600 100 Plus
3L 28110227 3L 4240952..4241180 251..479 1130 99.6 Plus
3L 28110227 3L 4241492..4241703 675..886 1060 100 Plus
3L 28110227 3L 4241233..4241435 474..676 1015 100 Plus
3L 28110227 3L 4241903..4242090 886..1073 940 100 Plus
3L 28110227 3L 4240396..4240523 17..144 640 100 Plus
3L 28110227 3L 4240786..4240891 145..250 530 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:30:02 has no hits.

BS05673.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:24 Download gff for BS05673.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RA 1..1374 17..1390 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:04 Download gff for BS05673.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RA 86..1461 13..1390 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:28 Download gff for BS05673.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RB 160..1533 17..1390 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:24 Download gff for BS05673.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RA 86..1461 13..1390 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:47 Download gff for BS05673.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RB 160..1533 17..1390 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:47 Download gff for BS05673.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4240396..4240523 17..144 100 -> Plus
3L 4240786..4240891 145..250 100 -> Plus
3L 4240952..4241176 251..475 100 -> Plus
3L 4241235..4241435 476..676 100 -> Plus
3L 4241494..4241703 677..886 100 -> Plus
3L 4241904..4242090 887..1073 100 -> Plus
3L 4242144..4242460 1074..1390 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:28 Download gff for BS05673.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4241904..4242090 887..1073 100 -> Plus
arm_3L 4242144..4242460 1074..1390 100   Plus
arm_3L 4240396..4240523 17..144 100 -> Plus
arm_3L 4240786..4240891 145..250 100 -> Plus
arm_3L 4240952..4241176 251..475 100 -> Plus
arm_3L 4241235..4241435 476..676 100 -> Plus
arm_3L 4241494..4241703 677..886 100 -> Plus

BS05673.pep Sequence

Translation from 16 to 1389

> BS05673.pep
MNRRLPGTISQCQKLLLATHNHAPTAFSTRFLSTSRVNRERQECQVLVVG
GGTGGCAMAAKLSSRLGSDKVVVLEPEDKHYYQPMFTLIGGGMKRLDQSH
RQMADVLPTKAKWVKEKALEFDPDNNTVSTSGGKTIKYDFLIIATGLQLN
YGKIPGLVEALETPDSNVCSIYSPKYVDHVYECLRRTNKGNAIFTFPNCP
IKCAGAPQKIAYISEHYFRKMGRRDNVNIIYNTSLPVIFGVKHYAEALMK
LIKRRNITLNVQRNLVEVRHKDNIAVFEDLAKPGVHYEETYSMLHVTPPM
STPDVVANCKKLVTPTGFVDVDQLTLQHNKYSNVFAIGDSASSPNSKTAA
AAAAQSPVVFKNVMAAIEGKAPTDIYDGYSSCPIVTGYSSCILAEFDYNL
TPVETFPLDQSKERYSMFFMKKELMPVLYWKLMMNGYWNGPALMRKIFSV
LKFNKKQ*

BS05673.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-PA 457 CG14997-PA 1..457 1..457 2403 100 Plus
CG14997-PB 457 CG14997-PB 1..457 1..457 2403 100 Plus