Clone BS05674 Report

Search the DGRC for BS05674

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptrtp-RA
Protein status:BS05674.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05674.3prime Sequence

627 bp (626 high quality bases) assembled on 2005-12-02

> BS05674.3prime
ATGGTCTAGAAAGCTTTCAGTATGGGTGTTCGCACTGGGAACGGGCCATA
AGAGCGCACTTTTGTGCACGCTGCACCACCTCGGGACATCGACGTCGTCT
CATAAAGCGGCAGTCTTGAAAGAATCCCTCGTTTCTGGGAAAGCCGTGCG
TGAAGTCCTGGAACGTCAGCAATCCCAGGCCCCAGATCTTGCCGCCTCGA
AACTCGCCCTCGTACTTCATTCCATCGGCTCTCCAGAAGATCCCATTACC
ATGAAACCAGCCCTGATGAAACTCGCCTTCGTATTTTGCTCCATCCGCGA
ACCAGAGGCAGCCCACTCCTTGACTAAGACCCTCCTGGAACTGCCCATCG
TAGCGGGTGCCATCGGCGAACTGCAGATGCCCGATGCCGTGCTTTTGGCC
ACGCTGGTTCCACTCGCCGATGTAGCGACTGGCGTCCTCGTATCGCCATC
CGCCCACTTTGACCGCCCCTGCGCTGTACTGGCTTTGACCCTGGCCCTGT
TGGTGGTGTCCATGCTGACCCTGCTGGTGGGGGTGCTGTTGGTGCTGGTT
CTCGATTCGGGCCGTGGTCACGCCCACGCTGCTCATGTCATCATCGTAGT
CGTCCATGGCCATGTCGACTGATAACT

BS05674.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10233-PA 597 CG10233-RA 1..597 613..17 2985 100 Minus
CG10233-PB 357 CG10233-RB 1..329 613..285 1645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
rtp-RA 960 CG10233-RA 57..654 613..16 2990 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5236873..5237173 285..585 1505 100 Plus
3R 32079331 3R 5236398..5236666 16..284 1345 100 Plus
Blast to na_te.dros performed 2015-02-12 17:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2369 549..491 106 64.4 Minus

BS05674.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:42 Download gff for BS05674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10233-PA 1..597 17..613 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:57 Download gff for BS05674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10233-PA 1..597 17..613 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:11 Download gff for BS05674.3prime
Subject Subject Range Query Range Percent Splice Strand
rtp-RA 53..664 9..620 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:49 Download gff for BS05674.3prime
Subject Subject Range Query Range Percent Splice Strand
rtp-RA 53..664 9..620 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:49 Download gff for BS05674.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5236388..5236666 9..284 98 <- Plus
3R 5236873..5237173 285..585 100 <- Plus
3R 5237232..5237263 586..620 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:11 Download gff for BS05674.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1062110..1062388 9..284 98 <- Plus
arm_3R 1062595..1062895 285..585 100 <- Plus
arm_3R 1062954..1062985 586..620 91   Plus

BS05674.5prime Sequence

627 bp (626 high quality bases) assembled on 2005-12-02

> BS05674.5prime
GAAGTTATCAGTCGACATGGCCATGGACGACTACGATGATGACATGAGCA
GCGTGGGCGTGACCACGGCCCGAATCGAGAACCAGCACCAACAGCACCCC
CACCAGCAGGGTCAGCATGGACACCACCAACAGGGCCAGGGTCAAAGCCA
GTACAGCGCAGGGGCGGTCAAAGTGGGCGGATGGCGATACGAGGACGCCA
GTCGCTACATCGGCGAGTGGAACCAGCGTGGCCAAAAGCACGGCATCGGG
CATCTGCAGTTCGCCGATGGCACCCGCTACGATGGGCAGTTCCAGGAGGG
TCTTAGTCAAGGAGTGGGCTGCCTCTGGTTCGCGGATGGAGCAAAATACG
AAGGCGAGTTTCATCAGGGCTGGTTTCATGGTAATGGGATCTTCTGGAGA
GCCGATGGAATGAAGTACGAGGGCGAGTTTCGAGGCGGCAAGATCTGGGG
CCTGGGATTGCTGACGTTCCAGGACTTCACGCACGGCTTTCCCAGAAACG
AGGGATTCTTTCAAGACTGCCGCTTTATGAGACGACGTCGATGTCCCGAG
GTGGTGCAGCGTGCACAAAAGTGCGCTCTTATGGCCCGTTCCCAGTGCGA
ACACCCATACTGAAAGCTTTCTAGACC

BS05674.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10233-PA 597 CG10233-RA 1..597 17..613 2985 100 Plus
CG10233-PB 357 CG10233-RB 1..329 17..345 1645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
rtp-RA 960 CG10233-RA 57..654 17..614 2990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5236873..5237173 345..45 1505 100 Minus
3R 32079331 3R 5236398..5236666 614..346 1345 100 Minus
Blast to na_te.dros performed 2015-02-11 16:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2369 81..139 106 64.4 Plus

BS05674.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:43 Download gff for BS05674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10233-PA 1..597 17..613 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:58 Download gff for BS05674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10233-PA 1..597 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:37:22 Download gff for BS05674.5prime
Subject Subject Range Query Range Percent Splice Strand
rtp-RA 53..664 10..621 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:20 Download gff for BS05674.5prime
Subject Subject Range Query Range Percent Splice Strand
rtp-RA 53..664 10..621 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:20 Download gff for BS05674.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5236388..5236666 346..621 98 <- Minus
3R 5236873..5237173 45..345 100 <- Minus
3R 5237232..5237263 10..44 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:37:22 Download gff for BS05674.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1062110..1062388 346..621 98 <- Minus
arm_3R 1062595..1062895 45..345 100 <- Minus
arm_3R 1062954..1062985 10..44 91   Minus

BS05674.complete Sequence

629 bp (629 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635211

> BS05674.complete
GAAGTTATCAGTCGACATGGCCATGGACGACTACGATGATGACATGAGCA
GCGTGGGCGTGACCACGGCCCGAATCGAGAACCAGCACCAACAGCACCCC
CACCAGCAGGGTCAGCATGGACACCACCAACAGGGCCAGGGTCAAAGCCA
GTACAGCGCAGGGGCGGTCAAAGTGGGCGGATGGCGATACGAGGACGCCA
GTCGCTACATCGGCGAGTGGAACCAGCGTGGCCAAAAGCACGGCATCGGG
CATCTGCAGTTCGCCGATGGCACCCGCTACGATGGGCAGTTCCAGGAGGG
TCTTAGTCAAGGAGTGGGCTGCCTCTGGTTCGCGGATGGAGCAAAATACG
AAGGCGAGTTTCATCAGGGCTGGTTTCATGGTAATGGGATCTTCTGGAGA
GCCGATGGAATGAAGTACGAGGGCGAGTTTCGAGGCGGCAAGATCTGGGG
CCTGGGATTGCTGACGTTCCAGGACTTCACGCACGGCTTTCCCAGAAACG
AGGGATTCTTTCAAGACTGCCGCTTTATGAGACGACGTCGATGTCCCGAG
GTGGTGCAGCGTGCACAAAAGTGCGCTCTTATGGCCCGTTCCCAGTGCGA
ACACCCATACTGAAAGCTTTCTAGACCAT

BS05674.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
rtp-RA 597 CG10233-PA 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
rtp-RA 960 CG10233-RA 57..654 17..614 2990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5236873..5237173 345..45 1505 100 Minus
3R 32079331 3R 5236398..5236666 614..346 1345 100 Minus
Blast to na_te.dros performed 2014-11-27 01:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2369 81..139 106 64.4 Plus

BS05674.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:25 Download gff for BS05674.complete
Subject Subject Range Query Range Percent Splice Strand
retinophilin-RA 1..597 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:06 Download gff for BS05674.complete
Subject Subject Range Query Range Percent Splice Strand
retinophilin-RA 54..665 10..621 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:51 Download gff for BS05674.complete
Subject Subject Range Query Range Percent Splice Strand
rtp-RA 57..652 17..612 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:25 Download gff for BS05674.complete
Subject Subject Range Query Range Percent Splice Strand
retinophilin-RA 54..665 10..621 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:53 Download gff for BS05674.complete
Subject Subject Range Query Range Percent Splice Strand
rtp-RA 57..652 17..612 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:53 Download gff for BS05674.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5236400..5236666 346..612 100 <- Minus
3R 5236873..5237173 45..345 100 <- Minus
3R 5237232..5237259 17..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:51 Download gff for BS05674.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1062595..1062895 45..345 100 <- Minus
arm_3R 1062122..1062388 346..612 100 <- Minus
arm_3R 1062954..1062981 17..44 100   Minus

BS05674.pep Sequence

Translation from 16 to 612

> BS05674.pep
MAMDDYDDDMSSVGVTTARIENQHQQHPHQQGQHGHHQQGQGQSQYSAGA
VKVGGWRYEDASRYIGEWNQRGQKHGIGHLQFADGTRYDGQFQEGLSQGV
GCLWFADGAKYEGEFHQGWFHGNGIFWRADGMKYEGEFRGGKIWGLGLLT
FQDFTHGFPRNEGFFQDCRFMRRRRCPEVVQRAQKCALMARSQCEHPY*

BS05674.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
rtp-PA 198 CG10233-PA 1..198 1..198 1127 100 Plus
CG14490-PA 197 CG14490-PA 15..170 25..158 161 32.5 Plus
CG5458-PA 344 CG5458-PA 33..143 47..157 159 33 Plus
CG5458-PA 344 CG5458-PA 27..110 64..147 155 39.3 Plus
jp-PE 1054 CG4405-PE 1..196 10..154 155 27.1 Plus
jp-PD 1054 CG4405-PD 1..196 10..154 155 27.1 Plus