Clone Sequence Records
BS05674.3prime Sequence
627 bp (626 high quality bases) assembled on 2005-12-02
> BS05674.3prime
ATGGTCTAGAAAGCTTTCAGTATGGGTGTTCGCACTGGGAACGGGCCATA
AGAGCGCACTTTTGTGCACGCTGCACCACCTCGGGACATCGACGTCGTCT
CATAAAGCGGCAGTCTTGAAAGAATCCCTCGTTTCTGGGAAAGCCGTGCG
TGAAGTCCTGGAACGTCAGCAATCCCAGGCCCCAGATCTTGCCGCCTCGA
AACTCGCCCTCGTACTTCATTCCATCGGCTCTCCAGAAGATCCCATTACC
ATGAAACCAGCCCTGATGAAACTCGCCTTCGTATTTTGCTCCATCCGCGA
ACCAGAGGCAGCCCACTCCTTGACTAAGACCCTCCTGGAACTGCCCATCG
TAGCGGGTGCCATCGGCGAACTGCAGATGCCCGATGCCGTGCTTTTGGCC
ACGCTGGTTCCACTCGCCGATGTAGCGACTGGCGTCCTCGTATCGCCATC
CGCCCACTTTGACCGCCCCTGCGCTGTACTGGCTTTGACCCTGGCCCTGT
TGGTGGTGTCCATGCTGACCCTGCTGGTGGGGGTGCTGTTGGTGCTGGTT
CTCGATTCGGGCCGTGGTCACGCCCACGCTGCTCATGTCATCATCGTAGT
CGTCCATGGCCATGTCGACTGATAACT
BS05674.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10233-PA | 597 | CG10233-RA | 1..597 | 613..17 | 2985 | 100 | Minus |
CG10233-PB | 357 | CG10233-RB | 1..329 | 613..285 | 1645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtp-RA | 960 | CG10233-RA | 57..654 | 613..16 | 2990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5236873..5237173 | 285..585 | 1505 | 100 | Plus |
3R | 32079331 | 3R | 5236398..5236666 | 16..284 | 1345 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 17:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2369 | 549..491 | 106 | 64.4 | Minus |
BS05674.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:42 Download gff for
BS05674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10233-PA | 1..597 | 17..613 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:57 Download gff for
BS05674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10233-PA | 1..597 | 17..613 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:11 Download gff for
BS05674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtp-RA | 53..664 | 9..620 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:49 Download gff for
BS05674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtp-RA | 53..664 | 9..620 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:49 Download gff for
BS05674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5236388..5236666 | 9..284 | 98 | <- | Plus |
3R | 5236873..5237173 | 285..585 | 100 | <- | Plus |
3R | 5237232..5237263 | 586..620 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:11 Download gff for
BS05674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1062110..1062388 | 9..284 | 98 | <- | Plus |
arm_3R | 1062595..1062895 | 285..585 | 100 | <- | Plus |
arm_3R | 1062954..1062985 | 586..620 | 91 | | Plus |
BS05674.5prime Sequence
627 bp (626 high quality bases) assembled on 2005-12-02
> BS05674.5prime
GAAGTTATCAGTCGACATGGCCATGGACGACTACGATGATGACATGAGCA
GCGTGGGCGTGACCACGGCCCGAATCGAGAACCAGCACCAACAGCACCCC
CACCAGCAGGGTCAGCATGGACACCACCAACAGGGCCAGGGTCAAAGCCA
GTACAGCGCAGGGGCGGTCAAAGTGGGCGGATGGCGATACGAGGACGCCA
GTCGCTACATCGGCGAGTGGAACCAGCGTGGCCAAAAGCACGGCATCGGG
CATCTGCAGTTCGCCGATGGCACCCGCTACGATGGGCAGTTCCAGGAGGG
TCTTAGTCAAGGAGTGGGCTGCCTCTGGTTCGCGGATGGAGCAAAATACG
AAGGCGAGTTTCATCAGGGCTGGTTTCATGGTAATGGGATCTTCTGGAGA
GCCGATGGAATGAAGTACGAGGGCGAGTTTCGAGGCGGCAAGATCTGGGG
CCTGGGATTGCTGACGTTCCAGGACTTCACGCACGGCTTTCCCAGAAACG
AGGGATTCTTTCAAGACTGCCGCTTTATGAGACGACGTCGATGTCCCGAG
GTGGTGCAGCGTGCACAAAAGTGCGCTCTTATGGCCCGTTCCCAGTGCGA
ACACCCATACTGAAAGCTTTCTAGACC
BS05674.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10233-PA | 597 | CG10233-RA | 1..597 | 17..613 | 2985 | 100 | Plus |
CG10233-PB | 357 | CG10233-RB | 1..329 | 17..345 | 1645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:22:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtp-RA | 960 | CG10233-RA | 57..654 | 17..614 | 2990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5236873..5237173 | 345..45 | 1505 | 100 | Minus |
3R | 32079331 | 3R | 5236398..5236666 | 614..346 | 1345 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 16:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2369 | 81..139 | 106 | 64.4 | Plus |
BS05674.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:43 Download gff for
BS05674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10233-PA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:49:58 Download gff for
BS05674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10233-PA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:37:22 Download gff for
BS05674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtp-RA | 53..664 | 10..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:20 Download gff for
BS05674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtp-RA | 53..664 | 10..621 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:20 Download gff for
BS05674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5236388..5236666 | 346..621 | 98 | <- | Minus |
3R | 5236873..5237173 | 45..345 | 100 | <- | Minus |
3R | 5237232..5237263 | 10..44 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:37:22 Download gff for
BS05674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1062110..1062388 | 346..621 | 98 | <- | Minus |
arm_3R | 1062595..1062895 | 45..345 | 100 | <- | Minus |
arm_3R | 1062954..1062985 | 10..44 | 91 | | Minus |
BS05674.complete Sequence
629 bp (629 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635211
> BS05674.complete
GAAGTTATCAGTCGACATGGCCATGGACGACTACGATGATGACATGAGCA
GCGTGGGCGTGACCACGGCCCGAATCGAGAACCAGCACCAACAGCACCCC
CACCAGCAGGGTCAGCATGGACACCACCAACAGGGCCAGGGTCAAAGCCA
GTACAGCGCAGGGGCGGTCAAAGTGGGCGGATGGCGATACGAGGACGCCA
GTCGCTACATCGGCGAGTGGAACCAGCGTGGCCAAAAGCACGGCATCGGG
CATCTGCAGTTCGCCGATGGCACCCGCTACGATGGGCAGTTCCAGGAGGG
TCTTAGTCAAGGAGTGGGCTGCCTCTGGTTCGCGGATGGAGCAAAATACG
AAGGCGAGTTTCATCAGGGCTGGTTTCATGGTAATGGGATCTTCTGGAGA
GCCGATGGAATGAAGTACGAGGGCGAGTTTCGAGGCGGCAAGATCTGGGG
CCTGGGATTGCTGACGTTCCAGGACTTCACGCACGGCTTTCCCAGAAACG
AGGGATTCTTTCAAGACTGCCGCTTTATGAGACGACGTCGATGTCCCGAG
GTGGTGCAGCGTGCACAAAAGTGCGCTCTTATGGCCCGTTCCCAGTGCGA
ACACCCATACTGAAAGCTTTCTAGACCAT
BS05674.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:10:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtp-RA | 597 | CG10233-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtp-RA | 960 | CG10233-RA | 57..654 | 17..614 | 2990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5236873..5237173 | 345..45 | 1505 | 100 | Minus |
3R | 32079331 | 3R | 5236398..5236666 | 614..346 | 1345 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:10:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2369 | 81..139 | 106 | 64.4 | Plus |
BS05674.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:25 Download gff for
BS05674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinophilin-RA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:06 Download gff for
BS05674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinophilin-RA | 54..665 | 10..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:51 Download gff for
BS05674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtp-RA | 57..652 | 17..612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:25 Download gff for
BS05674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinophilin-RA | 54..665 | 10..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:53 Download gff for
BS05674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtp-RA | 57..652 | 17..612 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:53 Download gff for
BS05674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5236400..5236666 | 346..612 | 100 | <- | Minus |
3R | 5236873..5237173 | 45..345 | 100 | <- | Minus |
3R | 5237232..5237259 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:51 Download gff for
BS05674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1062595..1062895 | 45..345 | 100 | <- | Minus |
arm_3R | 1062122..1062388 | 346..612 | 100 | <- | Minus |
arm_3R | 1062954..1062981 | 17..44 | 100 | | Minus |
BS05674.pep Sequence
Translation from 16 to 612
> BS05674.pep
MAMDDYDDDMSSVGVTTARIENQHQQHPHQQGQHGHHQQGQGQSQYSAGA
VKVGGWRYEDASRYIGEWNQRGQKHGIGHLQFADGTRYDGQFQEGLSQGV
GCLWFADGAKYEGEFHQGWFHGNGIFWRADGMKYEGEFRGGKIWGLGLLT
FQDFTHGFPRNEGFFQDCRFMRRRRCPEVVQRAQKCALMARSQCEHPY*
BS05674.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtp-PA | 198 | CG10233-PA | 1..198 | 1..198 | 1127 | 100 | Plus |
CG14490-PA | 197 | CG14490-PA | 15..170 | 25..158 | 161 | 32.5 | Plus |
CG5458-PA | 344 | CG5458-PA | 33..143 | 47..157 | 159 | 33 | Plus |
CG5458-PA | 344 | CG5458-PA | 27..110 | 64..147 | 155 | 39.3 | Plus |
jp-PE | 1054 | CG4405-PE | 1..196 | 10..154 | 155 | 27.1 | Plus |
jp-PD | 1054 | CG4405-PD | 1..196 | 10..154 | 155 | 27.1 | Plus |