Clone Sequence Records
BS05676.3prime Sequence
906 bp (751 high quality bases) assembled on 2005-12-02
> BS05676.3prime
ATGGTCTAGAAAGCTTCTATAATTTTGTTGGATCCAATGGATGAACCTGA
CCATCATCCCGCTCAAACTTAATTATCAGCTGCGACTGATGCTGGTTCCA
GTGCTCCGATCGATGTAATTTAGCATTCGTCTTCGAACGGAATTCCTCGA
CTGACAAATCGATCTCAATTTTTTCGTTACTTGCATCCGGATCGGCGGGG
TAAGCATCATCTCCTGGCAAGAGATGCACTAATCCATTTGTACACTTGTG
CACTACAGGATGAATCAGCTGAATGCCTTTGACCTCACGCTCTGCTGCAA
ACTGACGCAGGTTATCTAAAGAGGAGAAGTTTAGGCAGCGCGAAAGTTCA
TAGAATTGTGGAGGCGGCAGCCAGAGTTCTTTTCTTAGGCTCGCTTGAAG
GTAGTCCAATGGGGAACGCCACGCAGAATCCTTGACCTCATTAGGTTCGA
TGTGAACCCTGGGTTCCTGTTCCAGGGCAGTCATAAAGAAGGCCGTCTCG
AAGCGCTTCTTAAACGTGGACGGCGTGCGCCAGACAGACCACTCGTGAAG
TGACCAGACATCTGGAAGCACATCCAGCTGCTTGCAGAGCTCCAGGAACT
GGCTGGCATTGTTGTGGACGATGTGCTGCCAGTGGGCGCGGTCAAACTGG
TCATAGAACGCTCCATAATCGCTAGTGGAGGTCAATGATTTGCTGTCCCT
GCACAGCAGGATACCCAACTCCTCGAAGGTTTCTCGTATGGCAGTCAGCC
GCAGAGCTAGGGATGGATCCAGCGATTTCTTATCTGCCTTGGTGTGGAAA
ATATCCGGACGTGGACCCTTCACGTGGCCCACGTTCCGCAGCTTAGCGGC
ACTGAACTCGTTTCTCTGAAAGTGTTCCCACCAGGCAGGCGAACTGTCCG
AGGCAT
BS05676.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10194-PA | 1056 | CG10194-RA | 167..1056 | 906..17 | 4425 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10194-RA | 1215 | CG10194-RA | 200..1090 | 906..16 | 4440 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:00:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19488807..19489213 | 16..422 | 2035 | 100 | Plus |
2L | 23513712 | 2L | 19489300..19489642 | 422..764 | 1715 | 100 | Plus |
2L | 23513712 | 2L | 19489705..19489846 | 765..906 | 695 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:00:04 has no hits.
BS05676.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:46 Download gff for
BS05676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-PA | 167..1056 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:02 Download gff for
BS05676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-PA | 167..1056 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:51 Download gff for
BS05676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 200..1090 | 16..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:20 Download gff for
BS05676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 200..1090 | 16..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:20 Download gff for
BS05676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19488807..19489212 | 16..421 | 100 | <- | Plus |
2L | 19489300..19489642 | 422..764 | 100 | <- | Plus |
2L | 19489705..19489846 | 765..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:51 Download gff for
BS05676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19488807..19489212 | 16..421 | 100 | <- | Plus |
arm_2L | 19489300..19489642 | 422..764 | 100 | <- | Plus |
arm_2L | 19489705..19489846 | 765..906 | 99 | | Plus |
BS05676.5prime Sequence
906 bp (794 high quality bases) assembled on 2005-12-02
> BS05676.5prime
GAAGTTATCAGTCGACATGTCGAGGCTTTTGCCCAAAATTCGCTCCTCCT
CAAGTTTAATCCTTCTGGCTAAGAACCAAGTTGAAAAGTCCACGTCGTGT
GATTACAATGCCCTCCTCCTTACACGCACGCAGAAGTCCACTTTCATGCC
GGAGTCATCCGTGTTTCCTGGCGGAGTTTGCGATGCCTCGGACAGTTCGC
CTGCCTGGTTGGAACACTTTCAGAGAAACGAGTTCAGTGCCGCTAAGCTG
CGGAACGTGGGCCACGTGAAGGGTCCACGTCCGGATATTTTCCACACCAA
GGCAGATAAGAAATCGCTGGATCCATCCCTAGCTCTGCGGCTGACTGCCA
TACGAGAAACCTTCGAGGAGTTGGGTATCCTGCTGTGCAGGGACAGCAAA
TCATTGACCTCCACTAGCGATTATGGAGCGTTCTATGACCAGTTTGACCG
CGCCCACTGGCAGCACATCGTCCACAACAATGCCAGCCAGTTCCTGGAGC
TCTGCAAGCAGCTGGATGTGCTTCCAGATGTCTGGTCACTTCACGAGTGG
TCTGTCTGGCGCACGCCGTCCACGTTTAAGAAGCGCTTCGAGACGGCCTT
CTTTATGACTGCCCTGGAACAGGAACCCAGGGTTCACATCGAACCTAATG
AGGTCAAGGATTCTGCGTGGCGTTCCCCATTGGACTACCTTCAAGCGAGC
CTAAGAAAAGAACTCTGGCTGCCGCCTCCACAATTCTATGAACTTTCGCG
CTGCCTAAACTTCTCCTCTTTAGATAACCTGCGTCAGTTTGCAGCAGAGC
GTGAGGTCAAAGGCATTCAGCTGATTCATCCTGTAGTGCACAAGTGTACA
AATGGATTAGTGCATCTCTTGCCAGGAGATGATGCTTACCCCGCCGATCC
GGATGC
BS05676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10194-PA | 1056 | CG10194-RA | 1..890 | 17..906 | 4450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10194-RA | 1215 | CG10194-RA | 34..923 | 17..906 | 4450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19489300..19489642 | 667..325 | 1715 | 100 | Minus |
2L | 23513712 | 2L | 19488974..19489213 | 906..667 | 1200 | 100 | Minus |
2L | 23513712 | 2L | 19489705..19489919 | 324..110 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 19489978..19490071 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:26:13 has no hits.
BS05676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:47 Download gff for
BS05676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:04 Download gff for
BS05676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:38:03 Download gff for
BS05676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 34..923 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:54 Download gff for
BS05676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 34..923 | 17..906 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:54 Download gff for
BS05676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19488974..19489212 | 668..906 | 100 | <- | Minus |
2L | 19489300..19489642 | 325..667 | 100 | <- | Minus |
2L | 19489705..19489919 | 110..324 | 100 | <- | Minus |
2L | 19489979..19490071 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:38:03 Download gff for
BS05676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19488974..19489212 | 668..906 | 100 | <- | Minus |
arm_2L | 19489300..19489642 | 325..667 | 100 | <- | Minus |
arm_2L | 19489705..19489919 | 110..324 | 100 | <- | Minus |
arm_2L | 19489979..19490071 | 17..109 | 100 | | Minus |
BS05676.complete Sequence
1088 bp (1088 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635213
> BS05676.complete
GAAGTTATCAGTCGACATGTCGAGGCTTTTGCCCAAAATTCGCTCCTCCT
CAAGTTTAATCCTTCTGGCTAAGAACCAAGTTGAAAAGTCCACGTCGTGT
GATTACAATGCCCTCCTCCTTACACGCACGCAGAAGTCCACTTTCATGCC
GGAGTCATCCGTGTTTCCTGGCGGAGTTTGCGATGCCTCGGACAGTTCGC
CTGCCTGGTTGGAACACTTTCAGAGAAACGAGTTCAGTGCCGCTAAGCTG
CGGAACGTGGGCCACGTGAAGGGTCCACGTCCGGATATTTTCCACACCAA
GGCAGATAAGAAATCGCTGGATCCATCCCTAGCTCTGCGGCTGACTGCCA
TACGAGAAACCTTCGAGGAGTTGGGTATCCTGCTGTGCAGGGACAGCAAA
TCATTGACCTCCACTAGCGATTATGGAGCGTTCTATGACCAGTTTGACCG
CGCCCACTGGCAGCACATCGTCCACAACAATGCCAGCCAGTTCCTGGAGC
TCTGCAAGCAGCTGGATGTGCTTCCAGATGTCTGGTCACTTCACGAGTGG
TCTGTCTGGCGCACGCCGTCCACGTTTAAGAAGCGCTTCGAGACGGCCTT
CTTTATGACTGCCCTGGAACAGGAACCCAGGGTTCACATCGAACCTAATG
AGGTCAAGGATTCTGCGTGGCGTTCCCCATTGGACTACCTTCAAGCGAGC
CTAAGAAAAGAACTCTGGCTGCCGCCTCCACAATTCTATGAACTTTCGCG
CTGCCTAAACTTCTCCTCTTTAGATAACCTGCGTCAGTTTGCAGCAGAGC
GTGAGGTCAAAGGCATTCAGCTGATTCATCCTGTAGTGCACAAGTGTACA
AATGGATTAGTGCATCTCTTGCCAGGAGATGATGCTTACCCCGCCGATCC
GGATGCAAGTAACGAAAAAATTGAGATCGATTTGTCAGTCGAGGAATTCC
GTTCGAAGACGAATGCTAAATTACATCGATCGGAGCACTGGAACCAGCAT
CAGTCGCAGCTGATAATTAAGTTTGAGCGGGATGATGGTCAGGTTCATCC
ATTGGATCCAACAAAATTATAGAAGCTTTCTAGACCAT
BS05676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10194-RA | 1056 | CG10194-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10194-RA | 1215 | CG10194-RA | 34..1090 | 17..1073 | 5285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19488807..19489213 | 1073..667 | 2035 | 100 | Minus |
2L | 23513712 | 2L | 19489300..19489642 | 667..325 | 1715 | 100 | Minus |
2L | 23513712 | 2L | 19489705..19489919 | 324..110 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 19489978..19490071 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:00:01 has no hits.
BS05676.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:28 Download gff for
BS05676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 1..1056 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:09 Download gff for
BS05676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 13..1069 | 17..1073 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:54 Download gff for
BS05676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 34..1089 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:28 Download gff for
BS05676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 13..1069 | 17..1073 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:24 Download gff for
BS05676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 34..1089 | 17..1072 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:24 Download gff for
BS05676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19489705..19489919 | 110..324 | 100 | <- | Minus |
2L | 19489979..19490071 | 17..109 | 100 | | Minus |
2L | 19489300..19489642 | 325..667 | 100 | <- | Minus |
2L | 19488808..19489212 | 668..1072 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:54 Download gff for
BS05676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19489300..19489642 | 325..667 | 100 | <- | Minus |
arm_2L | 19489705..19489919 | 110..324 | 100 | <- | Minus |
arm_2L | 19489979..19490071 | 17..109 | 100 | | Minus |
arm_2L | 19488808..19489212 | 668..1072 | 100 | <- | Minus |
BS05676.pep Sequence
Translation from 16 to 1071
> BS05676.pep
MSRLLPKIRSSSSLILLAKNQVEKSTSCDYNALLLTRTQKSTFMPESSVF
PGGVCDASDSSPAWLEHFQRNEFSAAKLRNVGHVKGPRPDIFHTKADKKS
LDPSLALRLTAIRETFEELGILLCRDSKSLTSTSDYGAFYDQFDRAHWQH
IVHNNASQFLELCKQLDVLPDVWSLHEWSVWRTPSTFKKRFETAFFMTAL
EQEPRVHIEPNEVKDSAWRSPLDYLQASLRKELWLPPPQFYELSRCLNFS
SLDNLRQFAAEREVKGIQLIHPVVHKCTNGLVHLLPGDDAYPADPDASNE
KIEIDLSVEEFRSKTNAKLHRSEHWNQHQSQLIIKFERDDGQVHPLDPTK
L*
BS05676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10194-PA | 351 | CG10194-PA | 1..351 | 1..351 | 1861 | 100 | Plus |
CG18094-PB | 360 | CG18094-PB | 9..351 | 9..348 | 537 | 34.9 | Plus |
CG18094-PA | 360 | CG18094-PA | 9..351 | 9..348 | 537 | 34.9 | Plus |
CG10195-PB | 361 | CG10195-PB | 9..328 | 7..321 | 535 | 36.3 | Plus |
CG10195-PC | 361 | CG10195-PC | 9..328 | 7..321 | 535 | 36.3 | Plus |