Clone BS05676 Report

Search the DGRC for BS05676

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG10194-RA
Protein status:BS05676.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05676.3prime Sequence

906 bp (751 high quality bases) assembled on 2005-12-02

> BS05676.3prime
ATGGTCTAGAAAGCTTCTATAATTTTGTTGGATCCAATGGATGAACCTGA
CCATCATCCCGCTCAAACTTAATTATCAGCTGCGACTGATGCTGGTTCCA
GTGCTCCGATCGATGTAATTTAGCATTCGTCTTCGAACGGAATTCCTCGA
CTGACAAATCGATCTCAATTTTTTCGTTACTTGCATCCGGATCGGCGGGG
TAAGCATCATCTCCTGGCAAGAGATGCACTAATCCATTTGTACACTTGTG
CACTACAGGATGAATCAGCTGAATGCCTTTGACCTCACGCTCTGCTGCAA
ACTGACGCAGGTTATCTAAAGAGGAGAAGTTTAGGCAGCGCGAAAGTTCA
TAGAATTGTGGAGGCGGCAGCCAGAGTTCTTTTCTTAGGCTCGCTTGAAG
GTAGTCCAATGGGGAACGCCACGCAGAATCCTTGACCTCATTAGGTTCGA
TGTGAACCCTGGGTTCCTGTTCCAGGGCAGTCATAAAGAAGGCCGTCTCG
AAGCGCTTCTTAAACGTGGACGGCGTGCGCCAGACAGACCACTCGTGAAG
TGACCAGACATCTGGAAGCACATCCAGCTGCTTGCAGAGCTCCAGGAACT
GGCTGGCATTGTTGTGGACGATGTGCTGCCAGTGGGCGCGGTCAAACTGG
TCATAGAACGCTCCATAATCGCTAGTGGAGGTCAATGATTTGCTGTCCCT
GCACAGCAGGATACCCAACTCCTCGAAGGTTTCTCGTATGGCAGTCAGCC
GCAGAGCTAGGGATGGATCCAGCGATTTCTTATCTGCCTTGGTGTGGAAA
ATATCCGGACGTGGACCCTTCACGTGGCCCACGTTCCGCAGCTTAGCGGC
ACTGAACTCGTTTCTCTGAAAGTGTTCCCACCAGGCAGGCGAACTGTCCG
AGGCAT

BS05676.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-PA 1056 CG10194-RA 167..1056 906..17 4425 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-RA 1215 CG10194-RA 200..1090 906..16 4440 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19488807..19489213 16..422 2035 100 Plus
2L 23513712 2L 19489300..19489642 422..764 1715 100 Plus
2L 23513712 2L 19489705..19489846 765..906 695 99.3 Plus
Blast to na_te.dros performed on 2015-02-11 11:00:04 has no hits.

BS05676.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:46 Download gff for BS05676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-PA 167..1056 17..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:02 Download gff for BS05676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-PA 167..1056 17..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:51 Download gff for BS05676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 200..1090 16..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:20 Download gff for BS05676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 200..1090 16..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:20 Download gff for BS05676.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19488807..19489212 16..421 100 <- Plus
2L 19489300..19489642 422..764 100 <- Plus
2L 19489705..19489846 765..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:51 Download gff for BS05676.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19488807..19489212 16..421 100 <- Plus
arm_2L 19489300..19489642 422..764 100 <- Plus
arm_2L 19489705..19489846 765..906 99   Plus

BS05676.5prime Sequence

906 bp (794 high quality bases) assembled on 2005-12-02

> BS05676.5prime
GAAGTTATCAGTCGACATGTCGAGGCTTTTGCCCAAAATTCGCTCCTCCT
CAAGTTTAATCCTTCTGGCTAAGAACCAAGTTGAAAAGTCCACGTCGTGT
GATTACAATGCCCTCCTCCTTACACGCACGCAGAAGTCCACTTTCATGCC
GGAGTCATCCGTGTTTCCTGGCGGAGTTTGCGATGCCTCGGACAGTTCGC
CTGCCTGGTTGGAACACTTTCAGAGAAACGAGTTCAGTGCCGCTAAGCTG
CGGAACGTGGGCCACGTGAAGGGTCCACGTCCGGATATTTTCCACACCAA
GGCAGATAAGAAATCGCTGGATCCATCCCTAGCTCTGCGGCTGACTGCCA
TACGAGAAACCTTCGAGGAGTTGGGTATCCTGCTGTGCAGGGACAGCAAA
TCATTGACCTCCACTAGCGATTATGGAGCGTTCTATGACCAGTTTGACCG
CGCCCACTGGCAGCACATCGTCCACAACAATGCCAGCCAGTTCCTGGAGC
TCTGCAAGCAGCTGGATGTGCTTCCAGATGTCTGGTCACTTCACGAGTGG
TCTGTCTGGCGCACGCCGTCCACGTTTAAGAAGCGCTTCGAGACGGCCTT
CTTTATGACTGCCCTGGAACAGGAACCCAGGGTTCACATCGAACCTAATG
AGGTCAAGGATTCTGCGTGGCGTTCCCCATTGGACTACCTTCAAGCGAGC
CTAAGAAAAGAACTCTGGCTGCCGCCTCCACAATTCTATGAACTTTCGCG
CTGCCTAAACTTCTCCTCTTTAGATAACCTGCGTCAGTTTGCAGCAGAGC
GTGAGGTCAAAGGCATTCAGCTGATTCATCCTGTAGTGCACAAGTGTACA
AATGGATTAGTGCATCTCTTGCCAGGAGATGATGCTTACCCCGCCGATCC
GGATGC

BS05676.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-PA 1056 CG10194-RA 1..890 17..906 4450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-RA 1215 CG10194-RA 34..923 17..906 4450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19489300..19489642 667..325 1715 100 Minus
2L 23513712 2L 19488974..19489213 906..667 1200 100 Minus
2L 23513712 2L 19489705..19489919 324..110 1075 100 Minus
2L 23513712 2L 19489978..19490071 110..17 470 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:26:13 has no hits.

BS05676.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:47 Download gff for BS05676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-PA 1..890 17..906 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:04 Download gff for BS05676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-PA 1..890 17..906 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:38:03 Download gff for BS05676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 34..923 17..906 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:54 Download gff for BS05676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 34..923 17..906 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:54 Download gff for BS05676.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19488974..19489212 668..906 100 <- Minus
2L 19489300..19489642 325..667 100 <- Minus
2L 19489705..19489919 110..324 100 <- Minus
2L 19489979..19490071 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:38:03 Download gff for BS05676.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19488974..19489212 668..906 100 <- Minus
arm_2L 19489300..19489642 325..667 100 <- Minus
arm_2L 19489705..19489919 110..324 100 <- Minus
arm_2L 19489979..19490071 17..109 100   Minus

BS05676.complete Sequence

1088 bp (1088 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635213

> BS05676.complete
GAAGTTATCAGTCGACATGTCGAGGCTTTTGCCCAAAATTCGCTCCTCCT
CAAGTTTAATCCTTCTGGCTAAGAACCAAGTTGAAAAGTCCACGTCGTGT
GATTACAATGCCCTCCTCCTTACACGCACGCAGAAGTCCACTTTCATGCC
GGAGTCATCCGTGTTTCCTGGCGGAGTTTGCGATGCCTCGGACAGTTCGC
CTGCCTGGTTGGAACACTTTCAGAGAAACGAGTTCAGTGCCGCTAAGCTG
CGGAACGTGGGCCACGTGAAGGGTCCACGTCCGGATATTTTCCACACCAA
GGCAGATAAGAAATCGCTGGATCCATCCCTAGCTCTGCGGCTGACTGCCA
TACGAGAAACCTTCGAGGAGTTGGGTATCCTGCTGTGCAGGGACAGCAAA
TCATTGACCTCCACTAGCGATTATGGAGCGTTCTATGACCAGTTTGACCG
CGCCCACTGGCAGCACATCGTCCACAACAATGCCAGCCAGTTCCTGGAGC
TCTGCAAGCAGCTGGATGTGCTTCCAGATGTCTGGTCACTTCACGAGTGG
TCTGTCTGGCGCACGCCGTCCACGTTTAAGAAGCGCTTCGAGACGGCCTT
CTTTATGACTGCCCTGGAACAGGAACCCAGGGTTCACATCGAACCTAATG
AGGTCAAGGATTCTGCGTGGCGTTCCCCATTGGACTACCTTCAAGCGAGC
CTAAGAAAAGAACTCTGGCTGCCGCCTCCACAATTCTATGAACTTTCGCG
CTGCCTAAACTTCTCCTCTTTAGATAACCTGCGTCAGTTTGCAGCAGAGC
GTGAGGTCAAAGGCATTCAGCTGATTCATCCTGTAGTGCACAAGTGTACA
AATGGATTAGTGCATCTCTTGCCAGGAGATGATGCTTACCCCGCCGATCC
GGATGCAAGTAACGAAAAAATTGAGATCGATTTGTCAGTCGAGGAATTCC
GTTCGAAGACGAATGCTAAATTACATCGATCGGAGCACTGGAACCAGCAT
CAGTCGCAGCTGATAATTAAGTTTGAGCGGGATGATGGTCAGGTTCATCC
ATTGGATCCAACAAAATTATAGAAGCTTTCTAGACCAT

BS05676.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-RA 1056 CG10194-PA 1..1056 17..1072 5280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-RA 1215 CG10194-RA 34..1090 17..1073 5285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19488807..19489213 1073..667 2035 100 Minus
2L 23513712 2L 19489300..19489642 667..325 1715 100 Minus
2L 23513712 2L 19489705..19489919 324..110 1075 100 Minus
2L 23513712 2L 19489978..19490071 110..17 470 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:00:01 has no hits.

BS05676.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:28 Download gff for BS05676.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 1..1056 17..1072 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:09 Download gff for BS05676.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 13..1069 17..1073 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:54 Download gff for BS05676.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 34..1089 17..1072 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:28 Download gff for BS05676.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 13..1069 17..1073 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:24 Download gff for BS05676.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 34..1089 17..1072 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:24 Download gff for BS05676.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19489705..19489919 110..324 100 <- Minus
2L 19489979..19490071 17..109 100   Minus
2L 19489300..19489642 325..667 100 <- Minus
2L 19488808..19489212 668..1072 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:54 Download gff for BS05676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19489300..19489642 325..667 100 <- Minus
arm_2L 19489705..19489919 110..324 100 <- Minus
arm_2L 19489979..19490071 17..109 100   Minus
arm_2L 19488808..19489212 668..1072 100 <- Minus

BS05676.pep Sequence

Translation from 16 to 1071

> BS05676.pep
MSRLLPKIRSSSSLILLAKNQVEKSTSCDYNALLLTRTQKSTFMPESSVF
PGGVCDASDSSPAWLEHFQRNEFSAAKLRNVGHVKGPRPDIFHTKADKKS
LDPSLALRLTAIRETFEELGILLCRDSKSLTSTSDYGAFYDQFDRAHWQH
IVHNNASQFLELCKQLDVLPDVWSLHEWSVWRTPSTFKKRFETAFFMTAL
EQEPRVHIEPNEVKDSAWRSPLDYLQASLRKELWLPPPQFYELSRCLNFS
SLDNLRQFAAEREVKGIQLIHPVVHKCTNGLVHLLPGDDAYPADPDASNE
KIEIDLSVEEFRSKTNAKLHRSEHWNQHQSQLIIKFERDDGQVHPLDPTK
L*

BS05676.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-PA 351 CG10194-PA 1..351 1..351 1861 100 Plus
CG18094-PB 360 CG18094-PB 9..351 9..348 537 34.9 Plus
CG18094-PA 360 CG18094-PA 9..351 9..348 537 34.9 Plus
CG10195-PB 361 CG10195-PB 9..328 7..321 535 36.3 Plus
CG10195-PC 361 CG10195-PC 9..328 7..321 535 36.3 Plus