Clone BS05677 Report

Search the DGRC for BS05677

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCHOp24-RA
Protein status:BS05677.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05677.5prime Sequence

657 bp (656 high quality bases) assembled on 2005-12-02

> BS05677.5prime
GAAGTTATCAGTCGACATGGAATCGACACTCGCCAAGGTGCTGCTCCTTG
TGGGCAGCCTGCTGATCCTGTGCCGCACCAGCCACGCCTTCATCGTCAGC
GTGGACGCCCACAATGAGGAGTGCTTCTTCGAGAACGTCGAAGGCGGCAC
CAAGTTTGGCGTCACCTTCGAGGTGATCGACGGTGGCTTCCTAGACGTGG
ACATCAAGATCAGCGGCCCGGATAACCATGTGATGCACGAGAGCGAAAAG
GAGTCGTCCGGCAAGTACACCTTTGTGGCCCCCGCCAAGGGAACCTACAC
CGTGTGCTTCAACAACGAACGCAGCAGCATGACCCCCAAGCTGGTCATGT
TCTCCATCGACGTGGGTGACGCACCGCAACGTGCGCCCGGAGCACCCGGC
GAGGAGGAGGTGGGCCACACCAAGCTGGAGGACATGATTCGGGAGCTCTC
CGGCACGCTGACCAGTGTCAAGCACGAACAGGAGTACATGCATGTGCGCG
ACAAGATCCATCGTTCGGTGAACGAGAACACCAACTCGCGAGTGGTGCTG
TGGTCCACCTTCGAAGCCCTCGTCCTGGTCCTGATGACAGTGGGCCAGGT
GTACTACCTGAAACGCTTCTTCGAGGTCAAGCGCGTCGTGTAAAAGCTTT
CTAGACC

BS05677.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3564-PA 627 CG3564-RA 1..627 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
CHOp24-RB 1172 CG3564-RB 96..722 17..643 3135 100 Plus
CHOp24-RA 1104 CG3564-RA 96..722 17..643 3135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4541216..4541554 158..496 1695 100 Plus
X 23542271 X 4541907..4542056 494..643 750 100 Plus
X 23542271 X 4541003..4541145 17..159 715 100 Plus
Blast to na_te.dros performed 2015-02-13 08:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 3518..3551 600..633 107 79.4 Plus

BS05677.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:49 Download gff for BS05677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3564-PA 1..627 17..643 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:07 Download gff for BS05677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3564-PA 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:22:42 Download gff for BS05677.5prime
Subject Subject Range Query Range Percent Splice Strand
CHOp24-RA 90..722 9..643 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:37:20 Download gff for BS05677.5prime
Subject Subject Range Query Range Percent Splice Strand
CHOp24-RA 90..722 9..643 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:37:20 Download gff for BS05677.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4541217..4541551 159..493 100 -> Plus
X 4541907..4542056 494..643 100   Plus
X 4540997..4541144 9..158 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:22:42 Download gff for BS05677.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4435940..4436089 494..643 100   Plus
arm_X 4435030..4435177 9..158 97 -> Plus
arm_X 4435250..4435584 159..493 100 -> Plus

BS05677.3prime Sequence

657 bp (656 high quality bases) assembled on 2005-12-02

> BS05677.3prime
ATGGTCTAGAAAGCTTTTACACGACGCGCTTGACCTCGAAGAAGCGTTTC
AGGTAGTACACCTGGCCCACTGTCATCAGGACCAGGACGAGGGCTTCGAA
GGTGGACCACAGCACCACTCGCGAGTTGGTGTTCTCGTTCACCGAACGAT
GGATCTTGTCGCGCACATGCATGTACTCCTGTTCGTGCTTGACACTGGTC
AGCGTGCCGGAGAGCTCCCGAATCATGTCCTCCAGCTTGGTGTGGCCCAC
CTCCTCCTCGCCGGGTGCTCCGGGCGCACGTTGCGGTGCGTCACCCACGT
CGATGGAGAACATGACCAGCTTGGGGGTCATGCTGCTGCGTTCGTTGTTG
AAGCACACGGTGTAGGTTCCCTTGGCGGGGGCCACAAAGGTGTACTTGCC
GGACGACTCCTTTTCGCTCTCGTGCATCACATGGTTATCCGGGCCGCTGA
TCTTGATGTCCACGTCTAGGAAGCCACCGTCGATCACCTCGAAGGTGACG
CCAAACTTGGTGCCGCCTTCGACGTTCTCGAAGAAGCACTCCTCATTGTG
GGCGTCCACGCTGACGATGAAGGCGTGGCTGGTGCGGCACAGGATCAGCA
GGCTGCCCACAAGGAGCAGCACCTTGGCGAGTGTCGATTCCATGTCGACT
GATAACT

BS05677.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3564-PA 627 CG3564-RA 1..627 643..17 3135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
CHOp24-RB 1172 CG3564-RB 96..722 643..17 3135 100 Minus
CHOp24-RA 1104 CG3564-RA 96..722 643..17 3135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4541216..4541554 502..164 1695 100 Minus
X 23542271 X 4541907..4542056 166..17 750 100 Minus
X 23542271 X 4541003..4541145 643..501 715 100 Minus
Blast to na_te.dros performed 2015-02-11 10:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 3518..3551 60..27 107 79.4 Minus

BS05677.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:48 Download gff for BS05677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3564-PA 1..627 17..643 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:06 Download gff for BS05677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3564-PA 1..627 17..643 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:47 Download gff for BS05677.3prime
Subject Subject Range Query Range Percent Splice Strand
CHOp24-RA 90..722 17..651 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:58 Download gff for BS05677.3prime
Subject Subject Range Query Range Percent Splice Strand
CHOp24-RA 90..722 17..651 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:58 Download gff for BS05677.3prime
Subject Subject Range Query Range Percent Splice Strand
X 4541907..4542056 17..166 100   Minus
X 4540997..4541144 502..651 97 -> Minus
X 4541217..4541551 167..501 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:47 Download gff for BS05677.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4435030..4435177 502..651 97 -> Minus
arm_X 4435250..4435584 167..501 100 -> Minus
arm_X 4435940..4436089 17..166 100   Minus

BS05677.complete Sequence

659 bp (659 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635214

> BS05677.complete
GAAGTTATCAGTCGACATGGAATCGACACTCGCCAAGGTGCTGCTCCTTG
TGGGCAGCCTGCTGATCCTGTGCCGCACCAGCCACGCCTTCATCGTCAGC
GTGGACGCCCACAATGAGGAGTGCTTCTTCGAGAACGTCGAAGGCGGCAC
CAAGTTTGGCGTCACCTTCGAGGTGATCGACGGTGGCTTCCTAGACGTGG
ACATCAAGATCAGCGGCCCGGATAACCATGTGATGCACGAGAGCGAAAAG
GAGTCGTCCGGCAAGTACACCTTTGTGGCCCCCGCCAAGGGAACCTACAC
CGTGTGCTTCAACAACGAACGCAGCAGCATGACCCCCAAGCTGGTCATGT
TCTCCATCGACGTGGGTGACGCACCGCAACGTGCGCCCGGAGCACCCGGC
GAGGAGGAGGTGGGCCACACCAAGCTGGAGGACATGATTCGGGAGCTCTC
CGGCACGCTGACCAGTGTCAAGCACGAACAGGAGTACATGCATGTGCGCG
ACAAGATCCATCGTTCGGTGAACGAGAACACCAACTCGCGAGTGGTGCTG
TGGTCCACCTTCGAAGCCCTCGTCCTGGTCCTGATGACAGTGGGCCAGGT
GTACTACCTGAAACGCTTCTTCGAGGTCAAGCGCGTCGTGTAAAAGCTTT
CTAGACCAT

BS05677.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
CHOp24-RB 627 CG3564-PB 1..627 17..643 3135 100 Plus
CHOp24-RA 627 CG3564-PA 1..627 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
CHOp24-RB 1172 CG3564-RB 96..722 17..643 3135 100 Plus
CHOp24-RA 1104 CG3564-RA 96..722 17..643 3135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4541216..4541554 158..496 1695 100 Plus
X 23542271 X 4541907..4542056 494..643 750 100 Plus
X 23542271 X 4541003..4541145 17..159 715 100 Plus
Blast to na_te.dros performed 2014-11-27 08:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 3518..3551 600..633 107 79.4 Plus

BS05677.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:29 Download gff for BS05677.complete
Subject Subject Range Query Range Percent Splice Strand
CHOp24-RA 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:10 Download gff for BS05677.complete
Subject Subject Range Query Range Percent Splice Strand
CHOp24-RA 88..720 9..643 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:11 Download gff for BS05677.complete
Subject Subject Range Query Range Percent Splice Strand
CHOp24-RA 96..720 17..641 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:29 Download gff for BS05677.complete
Subject Subject Range Query Range Percent Splice Strand
CHOp24-RA 88..720 9..643 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:22 Download gff for BS05677.complete
Subject Subject Range Query Range Percent Splice Strand
CHOp24-RA 96..720 17..641 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:22 Download gff for BS05677.complete
Subject Subject Range Query Range Percent Splice Strand
X 4541003..4541144 17..158 100 -> Plus
X 4541217..4541551 159..493 100 -> Plus
X 4541907..4542054 494..641 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:11 Download gff for BS05677.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4435036..4435177 17..158 100 -> Plus
arm_X 4435250..4435584 159..493 100 -> Plus
arm_X 4435940..4436087 494..641 100   Plus

BS05677.pep Sequence

Translation from 16 to 642

> BS05677.pep
MESTLAKVLLLVGSLLILCRTSHAFIVSVDAHNEECFFENVEGGTKFGVT
FEVIDGGFLDVDIKISGPDNHVMHESEKESSGKYTFVAPAKGTYTVCFNN
ERSSMTPKLVMFSIDVGDAPQRAPGAPGEEEVGHTKLEDMIRELSGTLTS
VKHEQEYMHVRDKIHRSVNENTNSRVVLWSTFEALVLVLMTVGQVYYLKR
FFEVKRVV*

BS05677.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
CHOp24-PB 208 CG3564-PB 1..208 1..208 1072 100 Plus
CHOp24-PA 208 CG3564-PA 1..208 1..208 1072 100 Plus
CG9308-PA 203 CG9308-PA 8..203 15..208 409 40.8 Plus
p24-1-PB 210 CG1967-PB 4..197 7..202 238 27 Plus
p24-1-PA 210 CG1967-PA 4..197 7..202 238 27 Plus