Clone Sequence Records
BS05677.5prime Sequence
657 bp (656 high quality bases) assembled on 2005-12-02
> BS05677.5prime
GAAGTTATCAGTCGACATGGAATCGACACTCGCCAAGGTGCTGCTCCTTG
TGGGCAGCCTGCTGATCCTGTGCCGCACCAGCCACGCCTTCATCGTCAGC
GTGGACGCCCACAATGAGGAGTGCTTCTTCGAGAACGTCGAAGGCGGCAC
CAAGTTTGGCGTCACCTTCGAGGTGATCGACGGTGGCTTCCTAGACGTGG
ACATCAAGATCAGCGGCCCGGATAACCATGTGATGCACGAGAGCGAAAAG
GAGTCGTCCGGCAAGTACACCTTTGTGGCCCCCGCCAAGGGAACCTACAC
CGTGTGCTTCAACAACGAACGCAGCAGCATGACCCCCAAGCTGGTCATGT
TCTCCATCGACGTGGGTGACGCACCGCAACGTGCGCCCGGAGCACCCGGC
GAGGAGGAGGTGGGCCACACCAAGCTGGAGGACATGATTCGGGAGCTCTC
CGGCACGCTGACCAGTGTCAAGCACGAACAGGAGTACATGCATGTGCGCG
ACAAGATCCATCGTTCGGTGAACGAGAACACCAACTCGCGAGTGGTGCTG
TGGTCCACCTTCGAAGCCCTCGTCCTGGTCCTGATGACAGTGGGCCAGGT
GTACTACCTGAAACGCTTCTTCGAGGTCAAGCGCGTCGTGTAAAAGCTTT
CTAGACC
BS05677.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3564-PA | 627 | CG3564-RA | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHOp24-RB | 1172 | CG3564-RB | 96..722 | 17..643 | 3135 | 100 | Plus |
CHOp24-RA | 1104 | CG3564-RA | 96..722 | 17..643 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4541216..4541554 | 158..496 | 1695 | 100 | Plus |
X | 23542271 | X | 4541907..4542056 | 494..643 | 750 | 100 | Plus |
X | 23542271 | X | 4541003..4541145 | 17..159 | 715 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 08:50:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 3518..3551 | 600..633 | 107 | 79.4 | Plus |
BS05677.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:49 Download gff for
BS05677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3564-PA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:07 Download gff for
BS05677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3564-PA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:22:42 Download gff for
BS05677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 90..722 | 9..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:37:20 Download gff for
BS05677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 90..722 | 9..643 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:37:20 Download gff for
BS05677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4541217..4541551 | 159..493 | 100 | -> | Plus |
X | 4541907..4542056 | 494..643 | 100 | | Plus |
X | 4540997..4541144 | 9..158 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:22:42 Download gff for
BS05677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4435940..4436089 | 494..643 | 100 | | Plus |
arm_X | 4435030..4435177 | 9..158 | 97 | -> | Plus |
arm_X | 4435250..4435584 | 159..493 | 100 | -> | Plus |
BS05677.3prime Sequence
657 bp (656 high quality bases) assembled on 2005-12-02
> BS05677.3prime
ATGGTCTAGAAAGCTTTTACACGACGCGCTTGACCTCGAAGAAGCGTTTC
AGGTAGTACACCTGGCCCACTGTCATCAGGACCAGGACGAGGGCTTCGAA
GGTGGACCACAGCACCACTCGCGAGTTGGTGTTCTCGTTCACCGAACGAT
GGATCTTGTCGCGCACATGCATGTACTCCTGTTCGTGCTTGACACTGGTC
AGCGTGCCGGAGAGCTCCCGAATCATGTCCTCCAGCTTGGTGTGGCCCAC
CTCCTCCTCGCCGGGTGCTCCGGGCGCACGTTGCGGTGCGTCACCCACGT
CGATGGAGAACATGACCAGCTTGGGGGTCATGCTGCTGCGTTCGTTGTTG
AAGCACACGGTGTAGGTTCCCTTGGCGGGGGCCACAAAGGTGTACTTGCC
GGACGACTCCTTTTCGCTCTCGTGCATCACATGGTTATCCGGGCCGCTGA
TCTTGATGTCCACGTCTAGGAAGCCACCGTCGATCACCTCGAAGGTGACG
CCAAACTTGGTGCCGCCTTCGACGTTCTCGAAGAAGCACTCCTCATTGTG
GGCGTCCACGCTGACGATGAAGGCGTGGCTGGTGCGGCACAGGATCAGCA
GGCTGCCCACAAGGAGCAGCACCTTGGCGAGTGTCGATTCCATGTCGACT
GATAACT
BS05677.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3564-PA | 627 | CG3564-RA | 1..627 | 643..17 | 3135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:59:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHOp24-RB | 1172 | CG3564-RB | 96..722 | 643..17 | 3135 | 100 | Minus |
CHOp24-RA | 1104 | CG3564-RA | 96..722 | 643..17 | 3135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4541216..4541554 | 502..164 | 1695 | 100 | Minus |
X | 23542271 | X | 4541907..4542056 | 166..17 | 750 | 100 | Minus |
X | 23542271 | X | 4541003..4541145 | 643..501 | 715 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 10:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 3518..3551 | 60..27 | 107 | 79.4 | Minus |
BS05677.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:48 Download gff for
BS05677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3564-PA | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:06 Download gff for
BS05677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3564-PA | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:47 Download gff for
BS05677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 90..722 | 17..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:58 Download gff for
BS05677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 90..722 | 17..651 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:58 Download gff for
BS05677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4541907..4542056 | 17..166 | 100 | | Minus |
X | 4540997..4541144 | 502..651 | 97 | -> | Minus |
X | 4541217..4541551 | 167..501 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:47 Download gff for
BS05677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4435030..4435177 | 502..651 | 97 | -> | Minus |
arm_X | 4435250..4435584 | 167..501 | 100 | -> | Minus |
arm_X | 4435940..4436089 | 17..166 | 100 | | Minus |
BS05677.complete Sequence
659 bp (659 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635214
> BS05677.complete
GAAGTTATCAGTCGACATGGAATCGACACTCGCCAAGGTGCTGCTCCTTG
TGGGCAGCCTGCTGATCCTGTGCCGCACCAGCCACGCCTTCATCGTCAGC
GTGGACGCCCACAATGAGGAGTGCTTCTTCGAGAACGTCGAAGGCGGCAC
CAAGTTTGGCGTCACCTTCGAGGTGATCGACGGTGGCTTCCTAGACGTGG
ACATCAAGATCAGCGGCCCGGATAACCATGTGATGCACGAGAGCGAAAAG
GAGTCGTCCGGCAAGTACACCTTTGTGGCCCCCGCCAAGGGAACCTACAC
CGTGTGCTTCAACAACGAACGCAGCAGCATGACCCCCAAGCTGGTCATGT
TCTCCATCGACGTGGGTGACGCACCGCAACGTGCGCCCGGAGCACCCGGC
GAGGAGGAGGTGGGCCACACCAAGCTGGAGGACATGATTCGGGAGCTCTC
CGGCACGCTGACCAGTGTCAAGCACGAACAGGAGTACATGCATGTGCGCG
ACAAGATCCATCGTTCGGTGAACGAGAACACCAACTCGCGAGTGGTGCTG
TGGTCCACCTTCGAAGCCCTCGTCCTGGTCCTGATGACAGTGGGCCAGGT
GTACTACCTGAAACGCTTCTTCGAGGTCAAGCGCGTCGTGTAAAAGCTTT
CTAGACCAT
BS05677.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHOp24-RB | 627 | CG3564-PB | 1..627 | 17..643 | 3135 | 100 | Plus |
CHOp24-RA | 627 | CG3564-PA | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHOp24-RB | 1172 | CG3564-RB | 96..722 | 17..643 | 3135 | 100 | Plus |
CHOp24-RA | 1104 | CG3564-RA | 96..722 | 17..643 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4541216..4541554 | 158..496 | 1695 | 100 | Plus |
X | 23542271 | X | 4541907..4542056 | 494..643 | 750 | 100 | Plus |
X | 23542271 | X | 4541003..4541145 | 17..159 | 715 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 3518..3551 | 600..633 | 107 | 79.4 | Plus |
BS05677.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:29 Download gff for
BS05677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:10 Download gff for
BS05677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 88..720 | 9..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:11 Download gff for
BS05677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 96..720 | 17..641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:29 Download gff for
BS05677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 88..720 | 9..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:22 Download gff for
BS05677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 96..720 | 17..641 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:22 Download gff for
BS05677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4541003..4541144 | 17..158 | 100 | -> | Plus |
X | 4541217..4541551 | 159..493 | 100 | -> | Plus |
X | 4541907..4542054 | 494..641 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:11 Download gff for
BS05677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4435036..4435177 | 17..158 | 100 | -> | Plus |
arm_X | 4435250..4435584 | 159..493 | 100 | -> | Plus |
arm_X | 4435940..4436087 | 494..641 | 100 | | Plus |
BS05677.pep Sequence
Translation from 16 to 642
> BS05677.pep
MESTLAKVLLLVGSLLILCRTSHAFIVSVDAHNEECFFENVEGGTKFGVT
FEVIDGGFLDVDIKISGPDNHVMHESEKESSGKYTFVAPAKGTYTVCFNN
ERSSMTPKLVMFSIDVGDAPQRAPGAPGEEEVGHTKLEDMIRELSGTLTS
VKHEQEYMHVRDKIHRSVNENTNSRVVLWSTFEALVLVLMTVGQVYYLKR
FFEVKRVV*
BS05677.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHOp24-PB | 208 | CG3564-PB | 1..208 | 1..208 | 1072 | 100 | Plus |
CHOp24-PA | 208 | CG3564-PA | 1..208 | 1..208 | 1072 | 100 | Plus |
CG9308-PA | 203 | CG9308-PA | 8..203 | 15..208 | 409 | 40.8 | Plus |
p24-1-PB | 210 | CG1967-PB | 4..197 | 7..202 | 238 | 27 | Plus |
p24-1-PA | 210 | CG1967-PA | 4..197 | 7..202 | 238 | 27 | Plus |