Clone BS05679 Report

Search the DGRC for BS05679

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:79
Vector:pDNR-Dual
Associated Gene/Transcriptto-RA
Protein status:BS05679.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05679.3prime Sequence

780 bp (779 high quality bases) assembled on 2005-12-02

> BS05679.3prime
ATGGTCTAGAAAGCTTTCACGATTCATCCGCAAAAAACTTGGCATACGGC
AGTTTGGAGAACACACCTTTGACGACGCCCAGGTAAAGTTTGCCAAAGGA
TCGGTCGATTGCTTTGGCCGTCTCCTTGTAAATGGCCTCCGAGTTTTCGT
TGAGGAAGACATTCATGTTGTCACCCAGCGCCTTGTCCCCATTGAACAGA
TTACTGAAATGGTAGTGGCTGGACTCCGGCTTCATCGTTATTTTCAGATC
GGTAACGTCCAGGTAGGTCTCCCCATTCTTCACCAGCGGTTTGCCCGAGA
AGCTGACGATTGCCCTGACGTTAACCATTGTCATGTTACTCTGTCCAGTT
CCGCTGATCGGTAGAATGAGTACCTTGCCCTGGATGTTATAGGGTCCAAC
GAGTGAGAAGGTTTTCGTGACAATTTTCACTTCGTGCTTGGCGGTGAGAT
CCCTTCCGAAACCCTTTACTTTGACGATCCTTTGGTCCTTGATCCCATAC
AACAGATTGTCGGTGAAGGTTAGAGTTATGCCCACGGGACTGGAGCTCTC
ACCCTGGCTAATAACCATCCGATCCACCTTCAACGGATCCAGCTGCATCA
GGTTCAGACCAGGATCCCCCTCCGCCGAGTTTTCGCTGAACAGGGTGTTG
CACAGCTTCATGATACATTCGCCATCACCATACTTACAAGGTTTTGGATC
TTCGGGGAATTTGGCATCCACCGAGACCAAAAGGCACAAAACCACTGCGA
ATGCGATTGCGAACATGTCGACTGATAACT

BS05679.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11853-PA 750 to-RA 1..750 766..17 3750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
to-RB 1253 CG11853-RB 10..760 767..17 3755 100 Minus
to-RA 1038 CG11853-RA 10..760 767..17 3755 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25240867..25241175 325..17 1545 100 Minus
3R 32079331 3R 25240366..25240607 705..464 1210 100 Minus
3R 32079331 3R 25240674..25240817 464..321 705 99.3 Minus
3R 32079331 3R 25240189..25240250 767..706 310 100 Minus
Blast to na_te.dros performed on 2015-02-13 14:17:23 has no hits.

BS05679.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:18:52 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:11 Download gff for BS05679.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11853-PA 1..750 17..766 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:04:07 Download gff for BS05679.3prime
Subject Subject Range Query Range Percent Splice Strand
to-RA 10..763 11..767 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:10 Download gff for BS05679.3prime
Subject Subject Range Query Range Percent Splice Strand
to-RA 10..763 11..767 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:10 Download gff for BS05679.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25240189..25240250 706..767 100 -> Minus
3R 25240366..25240606 465..705 100 -> Minus
3R 25240674..25240813 325..464 100 -> Minus
3R 25240868..25241178 11..324 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:04:07 Download gff for BS05679.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21065911..21065972 706..767 100 -> Minus
arm_3R 21066088..21066328 465..705 100 -> Minus
arm_3R 21066396..21066535 325..464 100 -> Minus
arm_3R 21066590..21066900 11..324 99   Minus

BS05679.5prime Sequence

780 bp (779 high quality bases) assembled on 2005-12-02

> BS05679.5prime
GAAGTTATCAGTCGACATGTTCGCAATCGCATTCGCAGTGGTTTTGTGCC
TTTTGGTCTCGGTGGATGCCAAATTCCCCGAAGATCCAAAACCTTGTAAG
TATGGTGATGGCGAATGTATCATGAAGCTGTGCAACACCCTGTTCAGCGA
AAACTCGGCGGAGGGGGATCCTGGTCTGAACCTGATGCAGCTGGATCCGT
TGAAGGTGGATCGGATGGTTATTAGCCAGGGTGAGAGCTCCAGTCCCGTG
GGCATAACTCTAACCTTCACCGACAATCTGTTGTATGGGATCAAGGACCA
AAGGATCGTCAAAGTAAAGGGTTTCGGAAGGGATCTCACCGCCAAGCACG
AAGTGAAAATTGTCACGAAAACCTTCTCACTCGTTGGACCCTATAACATC
CAGGGCAAGGTACTCATTCTACCGATCAGCGGAACTGGACAGAGTAACAT
GACAATGGTTAACGTCAGGGCAATCGTCAGCTTCTCGGGCAAACCGCTGG
TGAAGAATGGGGAGACCTACCTGGACGTTACCGATCTGAAAATAACGATG
AAGCCGGAGTCCAGCCACTACCATTTCAGTAATCTGTTCAATGGGGACAA
GGCGCTGGGTGACAACATGAATGTCTTCCTCAACGAAAACTCGGAGGCCA
TTTACAAGGAGACGGCCAAAGCAATCGACCGATCCTTTGGCAAACTTTAC
CTGGGCGTCGTCAAAGGTGTGTTCTCCAAACTGCCGTATGCCAAGTTTTT
TGCGGATGAATCGTGAAAGCTTTCTAGACC

BS05679.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11853-PA 750 to-RA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
to-RB 1253 CG11853-RB 10..760 16..766 3755 100 Plus
to-RA 1038 CG11853-RA 10..760 16..766 3755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25240867..25241175 458..766 1545 100 Plus
3R 32079331 3R 25240366..25240607 78..319 1210 100 Plus
3R 32079331 3R 25240674..25240817 319..462 705 99.3 Plus
3R 32079331 3R 25240189..25240250 16..77 310 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:44:44 has no hits.

BS05679.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:18:53 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:13 Download gff for BS05679.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11853-PA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:21:05 Download gff for BS05679.5prime
Subject Subject Range Query Range Percent Splice Strand
to-RA 10..763 16..772 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:38:16 Download gff for BS05679.5prime
Subject Subject Range Query Range Percent Splice Strand
to-RA 10..763 16..772 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:38:16 Download gff for BS05679.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25240189..25240250 16..77 100 -> Plus
3R 25240366..25240606 78..318 100 -> Plus
3R 25240674..25240813 319..458 100 -> Plus
3R 25240868..25241178 459..772 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:21:05 Download gff for BS05679.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21065911..21065972 16..77 100 -> Plus
arm_3R 21066088..21066328 78..318 100 -> Plus
arm_3R 21066396..21066535 319..458 100 -> Plus
arm_3R 21066590..21066900 459..772 99   Plus

BS05679.complete Sequence

782 bp (782 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635215

> BS05679.complete
GAAGTTATCAGTCGACATGTTCGCAATCGCATTCGCAGTGGTTTTGTGCC
TTTTGGTCTCGGTGGATGCCAAATTCCCCGAAGATCCAAAACCTTGTAAG
TATGGTGATGGCGAATGTATCATGAAGCTGTGCAACACCCTGTTCAGCGA
AAACTCGGCGGAGGGGGATCCTGGTCTGAACCTGATGCAGCTGGATCCGT
TGAAGGTGGATCGGATGGTTATTAGCCAGGGTGAGAGCTCCAGTCCCGTG
GGCATAACTCTAACCTTCACCGACAATCTGTTGTATGGGATCAAGGACCA
AAGGATCGTCAAAGTAAAGGGTTTCGGAAGGGATCTCACCGCCAAGCACG
AAGTGAAAATTGTCACGAAAACCTTCTCACTCGTTGGACCCTATAACATC
CAGGGCAAGGTACTCATTCTACCGATCAGCGGAACTGGACAGAGTAACAT
GACAATGGTTAACGTCAGGGCAATCGTCAGCTTCTCGGGCAAACCGCTGG
TGAAGAATGGGGAGACCTACCTGGACGTTACCGATCTGAAAATAACGATG
AAGCCGGAGTCCAGCCACTACCATTTCAGTAATCTGTTCAATGGGGACAA
GGCGCTGGGTGACAACATGAATGTCTTCCTCAACGAAAACTCGGAGGCCA
TTTACAAGGAGACGGCCAAAGCAATCGACCGATCCTTTGGCAAACTTTAC
CTGGGCGTCGTCAAAGGTGTGTTCTCCAAACTGCCGTATGCCAAGTTTTT
TGCGGATGAATCGTGAAAGCTTTCTAGACCAT

BS05679.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
to-RB 750 CG11853-PB 1..750 17..766 3750 100 Plus
to-RA 750 CG11853-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
to-RB 1253 CG11853-RB 10..760 16..766 3755 100 Plus
to-RA 1038 CG11853-RA 10..760 16..766 3755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25240867..25241175 458..766 1545 100 Plus
3R 32079331 3R 25240366..25240607 78..319 1210 100 Plus
3R 32079331 3R 25240674..25240817 319..462 705 99.3 Plus
3R 32079331 3R 25240189..25240250 16..77 310 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:43:05 has no hits.

BS05679.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:30 Download gff for BS05679.complete
Subject Subject Range Query Range Percent Splice Strand
to-RA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:12 Download gff for BS05679.complete
Subject Subject Range Query Range Percent Splice Strand
to-RA 10..763 16..772 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:10 Download gff for BS05679.complete
Subject Subject Range Query Range Percent Splice Strand
to-RA 16..759 22..765 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:30 Download gff for BS05679.complete
Subject Subject Range Query Range Percent Splice Strand
to-RA 10..763 16..772 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:44 Download gff for BS05679.complete
Subject Subject Range Query Range Percent Splice Strand
to-RA 16..759 22..765 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:44 Download gff for BS05679.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25240195..25240250 22..77 100 -> Plus
3R 25240366..25240606 78..318 100 -> Plus
3R 25240674..25240813 319..458 100 -> Plus
3R 25240868..25241174 459..765 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:10 Download gff for BS05679.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21065917..21065972 22..77 100 -> Plus
arm_3R 21066088..21066328 78..318 100 -> Plus
arm_3R 21066396..21066535 319..458 100 -> Plus
arm_3R 21066590..21066896 459..765 100   Plus

BS05679.pep Sequence

Translation from 16 to 765

> BS05679.pep
MFAIAFAVVLCLLVSVDAKFPEDPKPCKYGDGECIMKLCNTLFSENSAEG
DPGLNLMQLDPLKVDRMVISQGESSSPVGITLTFTDNLLYGIKDQRIVKV
KGFGRDLTAKHEVKIVTKTFSLVGPYNIQGKVLILPISGTGQSNMTMVNV
RAIVSFSGKPLVKNGETYLDVTDLKITMKPESSHYHFSNLFNGDKALGDN
MNVFLNENSEAIYKETAKAIDRSFGKLYLGVVKGVFSKLPYAKFFADES*

BS05679.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
to-PB 249 CG11853-PB 1..249 1..249 1279 100 Plus
to-PA 249 CG11853-PA 1..249 1..249 1279 100 Plus
CG11852-PA 250 CG11852-PA 3..249 1..247 341 30.6 Plus
CG11854-PB 250 CG11854-PB 23..248 20..245 316 31.7 Plus
CG2650-PA 260 CG2650-PA 8..260 1..248 294 29.5 Plus