Clone Sequence Records
BS05679.3prime Sequence
780 bp (779 high quality bases) assembled on 2005-12-02
> BS05679.3prime
ATGGTCTAGAAAGCTTTCACGATTCATCCGCAAAAAACTTGGCATACGGC
AGTTTGGAGAACACACCTTTGACGACGCCCAGGTAAAGTTTGCCAAAGGA
TCGGTCGATTGCTTTGGCCGTCTCCTTGTAAATGGCCTCCGAGTTTTCGT
TGAGGAAGACATTCATGTTGTCACCCAGCGCCTTGTCCCCATTGAACAGA
TTACTGAAATGGTAGTGGCTGGACTCCGGCTTCATCGTTATTTTCAGATC
GGTAACGTCCAGGTAGGTCTCCCCATTCTTCACCAGCGGTTTGCCCGAGA
AGCTGACGATTGCCCTGACGTTAACCATTGTCATGTTACTCTGTCCAGTT
CCGCTGATCGGTAGAATGAGTACCTTGCCCTGGATGTTATAGGGTCCAAC
GAGTGAGAAGGTTTTCGTGACAATTTTCACTTCGTGCTTGGCGGTGAGAT
CCCTTCCGAAACCCTTTACTTTGACGATCCTTTGGTCCTTGATCCCATAC
AACAGATTGTCGGTGAAGGTTAGAGTTATGCCCACGGGACTGGAGCTCTC
ACCCTGGCTAATAACCATCCGATCCACCTTCAACGGATCCAGCTGCATCA
GGTTCAGACCAGGATCCCCCTCCGCCGAGTTTTCGCTGAACAGGGTGTTG
CACAGCTTCATGATACATTCGCCATCACCATACTTACAAGGTTTTGGATC
TTCGGGGAATTTGGCATCCACCGAGACCAAAAGGCACAAAACCACTGCGA
ATGCGATTGCGAACATGTCGACTGATAACT
BS05679.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11853-PA | 750 | to-RA | 1..750 | 766..17 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:17:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
to-RB | 1253 | CG11853-RB | 10..760 | 767..17 | 3755 | 100 | Minus |
to-RA | 1038 | CG11853-RA | 10..760 | 767..17 | 3755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:17:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25240867..25241175 | 325..17 | 1545 | 100 | Minus |
3R | 32079331 | 3R | 25240366..25240607 | 705..464 | 1210 | 100 | Minus |
3R | 32079331 | 3R | 25240674..25240817 | 464..321 | 705 | 99.3 | Minus |
3R | 32079331 | 3R | 25240189..25240250 | 767..706 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 14:17:23 has no hits.
BS05679.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:18:52 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:11 Download gff for
BS05679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11853-PA | 1..750 | 17..766 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:04:07 Download gff for
BS05679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 10..763 | 11..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:10 Download gff for
BS05679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 10..763 | 11..767 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:10 Download gff for
BS05679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25240189..25240250 | 706..767 | 100 | -> | Minus |
3R | 25240366..25240606 | 465..705 | 100 | -> | Minus |
3R | 25240674..25240813 | 325..464 | 100 | -> | Minus |
3R | 25240868..25241178 | 11..324 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:04:07 Download gff for
BS05679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21065911..21065972 | 706..767 | 100 | -> | Minus |
arm_3R | 21066088..21066328 | 465..705 | 100 | -> | Minus |
arm_3R | 21066396..21066535 | 325..464 | 100 | -> | Minus |
arm_3R | 21066590..21066900 | 11..324 | 99 | | Minus |
BS05679.5prime Sequence
780 bp (779 high quality bases) assembled on 2005-12-02
> BS05679.5prime
GAAGTTATCAGTCGACATGTTCGCAATCGCATTCGCAGTGGTTTTGTGCC
TTTTGGTCTCGGTGGATGCCAAATTCCCCGAAGATCCAAAACCTTGTAAG
TATGGTGATGGCGAATGTATCATGAAGCTGTGCAACACCCTGTTCAGCGA
AAACTCGGCGGAGGGGGATCCTGGTCTGAACCTGATGCAGCTGGATCCGT
TGAAGGTGGATCGGATGGTTATTAGCCAGGGTGAGAGCTCCAGTCCCGTG
GGCATAACTCTAACCTTCACCGACAATCTGTTGTATGGGATCAAGGACCA
AAGGATCGTCAAAGTAAAGGGTTTCGGAAGGGATCTCACCGCCAAGCACG
AAGTGAAAATTGTCACGAAAACCTTCTCACTCGTTGGACCCTATAACATC
CAGGGCAAGGTACTCATTCTACCGATCAGCGGAACTGGACAGAGTAACAT
GACAATGGTTAACGTCAGGGCAATCGTCAGCTTCTCGGGCAAACCGCTGG
TGAAGAATGGGGAGACCTACCTGGACGTTACCGATCTGAAAATAACGATG
AAGCCGGAGTCCAGCCACTACCATTTCAGTAATCTGTTCAATGGGGACAA
GGCGCTGGGTGACAACATGAATGTCTTCCTCAACGAAAACTCGGAGGCCA
TTTACAAGGAGACGGCCAAAGCAATCGACCGATCCTTTGGCAAACTTTAC
CTGGGCGTCGTCAAAGGTGTGTTCTCCAAACTGCCGTATGCCAAGTTTTT
TGCGGATGAATCGTGAAAGCTTTCTAGACC
BS05679.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11853-PA | 750 | to-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
to-RB | 1253 | CG11853-RB | 10..760 | 16..766 | 3755 | 100 | Plus |
to-RA | 1038 | CG11853-RA | 10..760 | 16..766 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25240867..25241175 | 458..766 | 1545 | 100 | Plus |
3R | 32079331 | 3R | 25240366..25240607 | 78..319 | 1210 | 100 | Plus |
3R | 32079331 | 3R | 25240674..25240817 | 319..462 | 705 | 99.3 | Plus |
3R | 32079331 | 3R | 25240189..25240250 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:44:44 has no hits.
BS05679.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:18:53 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:13 Download gff for
BS05679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11853-PA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:21:05 Download gff for
BS05679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 10..763 | 16..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:38:16 Download gff for
BS05679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 10..763 | 16..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:38:16 Download gff for
BS05679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25240189..25240250 | 16..77 | 100 | -> | Plus |
3R | 25240366..25240606 | 78..318 | 100 | -> | Plus |
3R | 25240674..25240813 | 319..458 | 100 | -> | Plus |
3R | 25240868..25241178 | 459..772 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:21:05 Download gff for
BS05679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21065911..21065972 | 16..77 | 100 | -> | Plus |
arm_3R | 21066088..21066328 | 78..318 | 100 | -> | Plus |
arm_3R | 21066396..21066535 | 319..458 | 100 | -> | Plus |
arm_3R | 21066590..21066900 | 459..772 | 99 | | Plus |
BS05679.complete Sequence
782 bp (782 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635215
> BS05679.complete
GAAGTTATCAGTCGACATGTTCGCAATCGCATTCGCAGTGGTTTTGTGCC
TTTTGGTCTCGGTGGATGCCAAATTCCCCGAAGATCCAAAACCTTGTAAG
TATGGTGATGGCGAATGTATCATGAAGCTGTGCAACACCCTGTTCAGCGA
AAACTCGGCGGAGGGGGATCCTGGTCTGAACCTGATGCAGCTGGATCCGT
TGAAGGTGGATCGGATGGTTATTAGCCAGGGTGAGAGCTCCAGTCCCGTG
GGCATAACTCTAACCTTCACCGACAATCTGTTGTATGGGATCAAGGACCA
AAGGATCGTCAAAGTAAAGGGTTTCGGAAGGGATCTCACCGCCAAGCACG
AAGTGAAAATTGTCACGAAAACCTTCTCACTCGTTGGACCCTATAACATC
CAGGGCAAGGTACTCATTCTACCGATCAGCGGAACTGGACAGAGTAACAT
GACAATGGTTAACGTCAGGGCAATCGTCAGCTTCTCGGGCAAACCGCTGG
TGAAGAATGGGGAGACCTACCTGGACGTTACCGATCTGAAAATAACGATG
AAGCCGGAGTCCAGCCACTACCATTTCAGTAATCTGTTCAATGGGGACAA
GGCGCTGGGTGACAACATGAATGTCTTCCTCAACGAAAACTCGGAGGCCA
TTTACAAGGAGACGGCCAAAGCAATCGACCGATCCTTTGGCAAACTTTAC
CTGGGCGTCGTCAAAGGTGTGTTCTCCAAACTGCCGTATGCCAAGTTTTT
TGCGGATGAATCGTGAAAGCTTTCTAGACCAT
BS05679.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
to-RB | 750 | CG11853-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
to-RA | 750 | CG11853-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
to-RB | 1253 | CG11853-RB | 10..760 | 16..766 | 3755 | 100 | Plus |
to-RA | 1038 | CG11853-RA | 10..760 | 16..766 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25240867..25241175 | 458..766 | 1545 | 100 | Plus |
3R | 32079331 | 3R | 25240366..25240607 | 78..319 | 1210 | 100 | Plus |
3R | 32079331 | 3R | 25240674..25240817 | 319..462 | 705 | 99.3 | Plus |
3R | 32079331 | 3R | 25240189..25240250 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:43:05 has no hits.
BS05679.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:30 Download gff for
BS05679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:12 Download gff for
BS05679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 10..763 | 16..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:10 Download gff for
BS05679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 16..759 | 22..765 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:30 Download gff for
BS05679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 10..763 | 16..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:44 Download gff for
BS05679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 16..759 | 22..765 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:44 Download gff for
BS05679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25240195..25240250 | 22..77 | 100 | -> | Plus |
3R | 25240366..25240606 | 78..318 | 100 | -> | Plus |
3R | 25240674..25240813 | 319..458 | 100 | -> | Plus |
3R | 25240868..25241174 | 459..765 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:10 Download gff for
BS05679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21065917..21065972 | 22..77 | 100 | -> | Plus |
arm_3R | 21066088..21066328 | 78..318 | 100 | -> | Plus |
arm_3R | 21066396..21066535 | 319..458 | 100 | -> | Plus |
arm_3R | 21066590..21066896 | 459..765 | 100 | | Plus |
BS05679.pep Sequence
Translation from 16 to 765
> BS05679.pep
MFAIAFAVVLCLLVSVDAKFPEDPKPCKYGDGECIMKLCNTLFSENSAEG
DPGLNLMQLDPLKVDRMVISQGESSSPVGITLTFTDNLLYGIKDQRIVKV
KGFGRDLTAKHEVKIVTKTFSLVGPYNIQGKVLILPISGTGQSNMTMVNV
RAIVSFSGKPLVKNGETYLDVTDLKITMKPESSHYHFSNLFNGDKALGDN
MNVFLNENSEAIYKETAKAIDRSFGKLYLGVVKGVFSKLPYAKFFADES*
BS05679.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
to-PB | 249 | CG11853-PB | 1..249 | 1..249 | 1279 | 100 | Plus |
to-PA | 249 | CG11853-PA | 1..249 | 1..249 | 1279 | 100 | Plus |
CG11852-PA | 250 | CG11852-PA | 3..249 | 1..247 | 341 | 30.6 | Plus |
CG11854-PB | 250 | CG11854-PB | 23..248 | 20..245 | 316 | 31.7 | Plus |
CG2650-PA | 260 | CG2650-PA | 8..260 | 1..248 | 294 | 29.5 | Plus |