Clone BS05681 Report

Search the DGRC for BS05681

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42Ea-RA
Protein status:BS05681.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05681.3prime Sequence

711 bp (710 high quality bases) assembled on 2005-12-02

> BS05681.3prime
ATGGTCTAGAAAGCTTTTAATATTCCGCACGGCGTCTATAGTTCCGAATG
CTGTTCGCCAAGCAACAGGCGAAAACGAATCCCACAAATTCGATGGCGGC
GATGACCAGACCGGCATACTTGATGATGTCGCTGTTCCTGTCCCAGAACT
CAACGAAGGTGACCTTGCATCCCCGCCGGTAGACGGTCTCCCAGCGGCAG
TTGTTGGTGTCGCTGCAGCAGGAGGGAGGGAACTTGCCCTGGTAGGCGTA
GTCGGTGTAGCCACTGCGTCCGCAGCATTTCATGCTGATCTGAATCGCGT
CCATGTAGTCGGAACGACTGGTGCGATGGTTCCAGGCCTTCTCGACCACG
TCGCCCATGATCTCCAGGTACTTGTCCTTCTGCACCCACATGTAGATCAC
CAAAGCCAGTTGGCCAATCATCAGGACGAACAGCAAGATCGAGTACGTCA
TGGACATGCAGTAGGATTCCCGAATGGCTCCGCAGCAGCCGAACCAGGAA
ATCAGCAGGATGATGGTGCCCAGGATGATCATCGTTACGGGCACCTGCTG
GGTTCGCAGGGCTTCCGCGAAGTCATCCATGTTACGGACTTTGCTGAACA
GCAGAGCTCCGAATACGATCAGCAATATGCCGCATATCGAACAGAGCANA
TTAAATATAAATAGGATATATTTAACCATGGAGATTCCGCAGCTCATGTC
GACTGATAACT

BS05681.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG18817-PA 681 Tsp42Ea-RA 1..681 697..17 3386 99.8 Minus
CG18817-PB 681 Tsp42Ea-RB 1..681 697..17 3386 99.8 Minus
CG18817-PC 681 Tsp42Ea-RC 1..681 697..17 3386 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ea-RC 1107 CG18817-RC 144..824 697..17 3394 99.9 Minus
Tsp42Ea-RB 1113 CG18817-RB 150..830 697..17 3394 99.9 Minus
Tsp42Ea-RA 1118 CG18817-RA 155..835 697..17 3394 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6997159..6997353 283..89 975 100 Minus
2R 25286936 2R 7003448..7003642 283..89 975 100 Minus
2R 25286936 2R 6996675..6996867 638..446 965 100 Minus
2R 25286936 2R 7002964..7003156 638..446 965 100 Minus
2R 25286936 2R 6996930..6997092 446..284 815 100 Minus
2R 25286936 2R 7003219..7003381 446..284 815 100 Minus
2R 25286936 2R 6997617..6997688 88..17 360 100 Minus
2R 25286936 2R 7003905..7003976 88..17 360 100 Minus
2R 25286936 2R 6994425..6994484 697..638 289 98.3 Minus
Blast to na_te.dros performed on 2015-02-02 18:31:28 has no hits.

BS05681.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:56 Download gff for BS05681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18817-PB 1..681 17..697 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:17 Download gff for BS05681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18817-PC 1..681 17..697 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:48 Download gff for BS05681.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ea-RA 146..835 17..706 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:53:23 Download gff for BS05681.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ea-RA 146..835 17..706 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:53:23 Download gff for BS05681.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6994416..6994484 638..706 94 -> Minus
2R 6996676..6996867 446..637 100 -> Minus
2R 6996931..6997092 284..445 100 -> Minus
2R 6997159..6997353 89..283 100 -> Minus
2R 6997617..6997688 17..88 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:48 Download gff for BS05681.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2881921..2881989 638..706 94 -> Minus
arm_2R 2884181..2884372 446..637 100 -> Minus
arm_2R 2884436..2884597 284..445 100 -> Minus
arm_2R 2884664..2884858 89..283 100 -> Minus
arm_2R 2885122..2885193 17..88 100   Minus

BS05681.5prime Sequence

711 bp (710 high quality bases) assembled on 2005-12-02

> BS05681.5prime
GAAGTTATCAGTCGACATGAGCTGCGGAATCTCCATGGTTAAATATATCC
TATTTATATTTAATTTGCTCTGTTCGATATGCGGCATATTGCTGATCGTA
TTCGGAGCTCTGCTGTTCAGCAAAGTCCGTAACATGGATGACTTCGCGGA
AGCCCTGCGAACCCAGCAGGTGCCCGTAACGATGATCATCCTGGGCACCA
TCATCCTGCTGATTTCCTGGTTCGGCTGCTGCGGAGCCATTCGGGAATCC
TACTGCATGTCCATGACGTACTCGATCTTGCTGTTCGTCCTGATGATTGG
CCAACTGGCTTTGGTGATCTACATGTGGGTGCAGAAGGACAAGTACCTGG
AGATCATGGGCGACGTGGTCGAGAAGGCCTGGAACCATCGCACCAGTCGT
TCCGACTACATGGACGCGATTCAGATCAGCATGAAATGCTGCGGACGCAG
TGGCTACACCGACTACGCCTACCAGGGCAAGTTCCCTCCCTCCTGCTGCA
GCGACACCAACAACTGCCGCTGGGAGACCGTCTACCGGCGGGGATGCAAG
GTCACCTTCGTTGAGTTCTGGGACAGGAACAGCGACATCATCAAGTATGC
CGGTCTGGTCATCGCCGCCATCGAATTTGTGGGATTCGTTTTCGCCTGTT
GCTTGGCGAACAGCATTCGGAACTATAGACGCCGTGCGGAATATTAAAAG
CTTTCTAGACC

BS05681.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG18817-PA 681 Tsp42Ea-RA 1..681 17..697 3405 100 Plus
CG18817-PB 681 Tsp42Ea-RB 1..681 17..697 3405 100 Plus
CG18817-PC 681 Tsp42Ea-RC 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ea-RC 1107 CG18817-RC 144..824 17..697 3405 100 Plus
Tsp42Ea-RB 1113 CG18817-RB 150..830 17..697 3405 100 Plus
Tsp42Ea-RA 1118 CG18817-RA 155..835 17..697 3405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6997159..6997353 431..625 975 100 Plus
2R 25286936 2R 7003448..7003642 431..625 975 100 Plus
2R 25286936 2R 6996675..6996867 76..268 965 100 Plus
2R 25286936 2R 7002964..7003156 76..268 965 100 Plus
2R 25286936 2R 6996930..6997092 268..430 815 100 Plus
2R 25286936 2R 7003219..7003381 268..430 815 100 Plus
2R 25286936 2R 6997617..6997688 626..697 360 100 Plus
2R 25286936 2R 7003905..7003976 626..697 360 100 Plus
2R 25286936 2R 6994425..6994484 17..76 300 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:22:26 has no hits.

BS05681.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:57 Download gff for BS05681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18817-PB 1..681 17..697 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:18 Download gff for BS05681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18817-PC 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:37:20 Download gff for BS05681.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ea-RA 146..835 8..697 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:18 Download gff for BS05681.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ea-RA 146..835 8..697 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:18 Download gff for BS05681.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6994416..6994484 8..76 95 -> Plus
2R 6996676..6996867 77..268 100 -> Plus
2R 6996931..6997092 269..430 100 -> Plus
2R 6997159..6997353 431..625 100 -> Plus
2R 6997617..6997688 626..697 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:37:20 Download gff for BS05681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2881921..2881989 8..76 95 -> Plus
arm_2R 2884181..2884372 77..268 100 -> Plus
arm_2R 2884436..2884597 269..430 100 -> Plus
arm_2R 2884664..2884858 431..625 100 -> Plus
arm_2R 2885122..2885193 626..697 100   Plus

BS05681.complete Sequence

713 bp (713 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635216

> BS05681.complete
GAAGTTATCAGTCGACATGAGCTGCGGAATCTCCATGGTTAAATATATCC
TATTTATATTTAATTTGCTCTGTTCGATATGCGGCATATTGCTGATCGTA
TTCGGAGCTCTGCTGTTCAGCAAAGTCCGTAACATGGATGACTTCGCGGA
AGCCCTGCGAACCCAGCAGGTGCCCGTAACGATGATCATCCTGGGCACCA
TCATCCTGCTGATTTCCTGGTTCGGCTGCTGCGGAGCCATTCGGGAATCC
TACTGCATGTCCATGACGTACTCGATCTTGCTGTTCGTCCTGATGATTGG
CCAACTGGCTTTGGTGATCTACATGTGGGTGCAGAAGGACAAGTACCTGG
AGATCATGGGCGACGTGGTCGAGAAGGCCTGGAACCATCGCACCAGTCGT
TCCGACTACATGGACGCGATTCAGATCAGCATGAAATGCTGCGGACGCAG
TGGCTACACCGACTACGCCTACCAGGGCAAGTTCCCTCCCTCCTGCTGCA
GCGACACCAACAACTGCCGCTGGGAGACCGTCTACCGGCGGGGATGCAAG
GTCACCTTCGTTGAGTTCTGGGACAGGAACAGCGACATCATCAAGTATGC
CGGTCTGGTCATCGCCGCCATCGAATTTGTGGGATTCGTTTTCGCCTGTT
GCTTGGCGAACAGCATTCGGAACTATAGACGCCGTGCGGAATATTAAAAG
CTTTCTAGACCAT

BS05681.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ea-RC 681 CG18817-PC 1..681 17..697 3405 100 Plus
Tsp42Ea-RB 681 CG18817-PB 1..681 17..697 3405 100 Plus
Tsp42Ea-RA 681 CG18817-PA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ea-RC 1107 CG18817-RC 144..824 17..697 3405 100 Plus
Tsp42Ea-RB 1113 CG18817-RB 150..830 17..697 3405 100 Plus
Tsp42Ea-RA 1118 CG18817-RA 155..835 17..697 3405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6997159..6997353 431..625 975 100 Plus
2R 25286936 2R 7003448..7003642 431..625 975 100 Plus
2R 25286936 2R 6996675..6996867 76..268 965 100 Plus
2R 25286936 2R 7002964..7003156 76..268 965 100 Plus
2R 25286936 2R 7003219..7003381 268..430 815 100 Plus
2R 25286936 2R 6996930..6997092 268..430 815 100 Plus
2R 25286936 2R 6997617..6997688 626..697 360 100 Plus
2R 25286936 2R 7003905..7003976 626..697 360 100 Plus
2R 25286936 2R 6994425..6994484 17..76 300 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:01:29 has no hits.

BS05681.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:31 Download gff for BS05681.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ea-RC 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:14 Download gff for BS05681.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ea-RC 140..829 8..697 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:34 Download gff for BS05681.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ea-RA 155..833 17..695 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:31 Download gff for BS05681.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ea-RC 140..829 8..697 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:37 Download gff for BS05681.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ea-RA 155..833 17..695 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:37 Download gff for BS05681.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6994425..6994484 17..76 100 -> Plus
2R 6996676..6996867 77..268 100 -> Plus
2R 6996931..6997092 269..430 100 -> Plus
2R 6997159..6997353 431..625 100 -> Plus
2R 6997617..6997686 626..695 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:34 Download gff for BS05681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2881930..2881989 17..76 100 -> Plus
arm_2R 2884181..2884372 77..268 100 -> Plus
arm_2R 2884436..2884597 269..430 100 -> Plus
arm_2R 2884664..2884858 431..625 100 -> Plus
arm_2R 2885122..2885191 626..695 100   Plus

BS05681.pep Sequence

Translation from 16 to 696

> BS05681.pep
MSCGISMVKYILFIFNLLCSICGILLIVFGALLFSKVRNMDDFAEALRTQ
QVPVTMIILGTIILLISWFGCCGAIRESYCMSMTYSILLFVLMIGQLALV
IYMWVQKDKYLEIMGDVVEKAWNHRTSRSDYMDAIQISMKCCGRSGYTDY
AYQGKFPPSCCSDTNNCRWETVYRRGCKVTFVEFWDRNSDIIKYAGLVIA
AIEFVGFVFACCLANSIRNYRRRAEY*

BS05681.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ea-PC 226 CG18817-PC 1..226 1..226 1208 100 Plus
Tsp42Ea-PB 226 CG18817-PB 1..226 1..226 1208 100 Plus
Tsp42Ea-PA 226 CG18817-PA 1..226 1..226 1208 100 Plus
Tsp42Ed-PB 227 CG12846-PB 1..227 1..226 530 41.9 Plus
Tsp42Ed-PA 227 CG12846-PA 1..227 1..226 530 41.9 Plus