Clone Sequence Records
BS05681.3prime Sequence
711 bp (710 high quality bases) assembled on 2005-12-02
> BS05681.3prime
ATGGTCTAGAAAGCTTTTAATATTCCGCACGGCGTCTATAGTTCCGAATG
CTGTTCGCCAAGCAACAGGCGAAAACGAATCCCACAAATTCGATGGCGGC
GATGACCAGACCGGCATACTTGATGATGTCGCTGTTCCTGTCCCAGAACT
CAACGAAGGTGACCTTGCATCCCCGCCGGTAGACGGTCTCCCAGCGGCAG
TTGTTGGTGTCGCTGCAGCAGGAGGGAGGGAACTTGCCCTGGTAGGCGTA
GTCGGTGTAGCCACTGCGTCCGCAGCATTTCATGCTGATCTGAATCGCGT
CCATGTAGTCGGAACGACTGGTGCGATGGTTCCAGGCCTTCTCGACCACG
TCGCCCATGATCTCCAGGTACTTGTCCTTCTGCACCCACATGTAGATCAC
CAAAGCCAGTTGGCCAATCATCAGGACGAACAGCAAGATCGAGTACGTCA
TGGACATGCAGTAGGATTCCCGAATGGCTCCGCAGCAGCCGAACCAGGAA
ATCAGCAGGATGATGGTGCCCAGGATGATCATCGTTACGGGCACCTGCTG
GGTTCGCAGGGCTTCCGCGAAGTCATCCATGTTACGGACTTTGCTGAACA
GCAGAGCTCCGAATACGATCAGCAATATGCCGCATATCGAACAGAGCANA
TTAAATATAAATAGGATATATTTAACCATGGAGATTCCGCAGCTCATGTC
GACTGATAACT
BS05681.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18817-PA | 681 | Tsp42Ea-RA | 1..681 | 697..17 | 3386 | 99.8 | Minus |
CG18817-PB | 681 | Tsp42Ea-RB | 1..681 | 697..17 | 3386 | 99.8 | Minus |
CG18817-PC | 681 | Tsp42Ea-RC | 1..681 | 697..17 | 3386 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ea-RC | 1107 | CG18817-RC | 144..824 | 697..17 | 3394 | 99.9 | Minus |
Tsp42Ea-RB | 1113 | CG18817-RB | 150..830 | 697..17 | 3394 | 99.9 | Minus |
Tsp42Ea-RA | 1118 | CG18817-RA | 155..835 | 697..17 | 3394 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6997159..6997353 | 283..89 | 975 | 100 | Minus |
2R | 25286936 | 2R | 7003448..7003642 | 283..89 | 975 | 100 | Minus |
2R | 25286936 | 2R | 6996675..6996867 | 638..446 | 965 | 100 | Minus |
2R | 25286936 | 2R | 7002964..7003156 | 638..446 | 965 | 100 | Minus |
2R | 25286936 | 2R | 6996930..6997092 | 446..284 | 815 | 100 | Minus |
2R | 25286936 | 2R | 7003219..7003381 | 446..284 | 815 | 100 | Minus |
2R | 25286936 | 2R | 6997617..6997688 | 88..17 | 360 | 100 | Minus |
2R | 25286936 | 2R | 7003905..7003976 | 88..17 | 360 | 100 | Minus |
2R | 25286936 | 2R | 6994425..6994484 | 697..638 | 289 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:31:28 has no hits.
BS05681.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:56 Download gff for
BS05681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18817-PB | 1..681 | 17..697 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:17 Download gff for
BS05681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18817-PC | 1..681 | 17..697 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:48 Download gff for
BS05681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ea-RA | 146..835 | 17..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:53:23 Download gff for
BS05681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ea-RA | 146..835 | 17..706 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:53:23 Download gff for
BS05681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6994416..6994484 | 638..706 | 94 | -> | Minus |
2R | 6996676..6996867 | 446..637 | 100 | -> | Minus |
2R | 6996931..6997092 | 284..445 | 100 | -> | Minus |
2R | 6997159..6997353 | 89..283 | 100 | -> | Minus |
2R | 6997617..6997688 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:48 Download gff for
BS05681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2881921..2881989 | 638..706 | 94 | -> | Minus |
arm_2R | 2884181..2884372 | 446..637 | 100 | -> | Minus |
arm_2R | 2884436..2884597 | 284..445 | 100 | -> | Minus |
arm_2R | 2884664..2884858 | 89..283 | 100 | -> | Minus |
arm_2R | 2885122..2885193 | 17..88 | 100 | | Minus |
BS05681.5prime Sequence
711 bp (710 high quality bases) assembled on 2005-12-02
> BS05681.5prime
GAAGTTATCAGTCGACATGAGCTGCGGAATCTCCATGGTTAAATATATCC
TATTTATATTTAATTTGCTCTGTTCGATATGCGGCATATTGCTGATCGTA
TTCGGAGCTCTGCTGTTCAGCAAAGTCCGTAACATGGATGACTTCGCGGA
AGCCCTGCGAACCCAGCAGGTGCCCGTAACGATGATCATCCTGGGCACCA
TCATCCTGCTGATTTCCTGGTTCGGCTGCTGCGGAGCCATTCGGGAATCC
TACTGCATGTCCATGACGTACTCGATCTTGCTGTTCGTCCTGATGATTGG
CCAACTGGCTTTGGTGATCTACATGTGGGTGCAGAAGGACAAGTACCTGG
AGATCATGGGCGACGTGGTCGAGAAGGCCTGGAACCATCGCACCAGTCGT
TCCGACTACATGGACGCGATTCAGATCAGCATGAAATGCTGCGGACGCAG
TGGCTACACCGACTACGCCTACCAGGGCAAGTTCCCTCCCTCCTGCTGCA
GCGACACCAACAACTGCCGCTGGGAGACCGTCTACCGGCGGGGATGCAAG
GTCACCTTCGTTGAGTTCTGGGACAGGAACAGCGACATCATCAAGTATGC
CGGTCTGGTCATCGCCGCCATCGAATTTGTGGGATTCGTTTTCGCCTGTT
GCTTGGCGAACAGCATTCGGAACTATAGACGCCGTGCGGAATATTAAAAG
CTTTCTAGACC
BS05681.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18817-PA | 681 | Tsp42Ea-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
CG18817-PB | 681 | Tsp42Ea-RB | 1..681 | 17..697 | 3405 | 100 | Plus |
CG18817-PC | 681 | Tsp42Ea-RC | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ea-RC | 1107 | CG18817-RC | 144..824 | 17..697 | 3405 | 100 | Plus |
Tsp42Ea-RB | 1113 | CG18817-RB | 150..830 | 17..697 | 3405 | 100 | Plus |
Tsp42Ea-RA | 1118 | CG18817-RA | 155..835 | 17..697 | 3405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:22:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6997159..6997353 | 431..625 | 975 | 100 | Plus |
2R | 25286936 | 2R | 7003448..7003642 | 431..625 | 975 | 100 | Plus |
2R | 25286936 | 2R | 6996675..6996867 | 76..268 | 965 | 100 | Plus |
2R | 25286936 | 2R | 7002964..7003156 | 76..268 | 965 | 100 | Plus |
2R | 25286936 | 2R | 6996930..6997092 | 268..430 | 815 | 100 | Plus |
2R | 25286936 | 2R | 7003219..7003381 | 268..430 | 815 | 100 | Plus |
2R | 25286936 | 2R | 6997617..6997688 | 626..697 | 360 | 100 | Plus |
2R | 25286936 | 2R | 7003905..7003976 | 626..697 | 360 | 100 | Plus |
2R | 25286936 | 2R | 6994425..6994484 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:22:26 has no hits.
BS05681.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:57 Download gff for
BS05681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18817-PB | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:18 Download gff for
BS05681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18817-PC | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:37:20 Download gff for
BS05681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ea-RA | 146..835 | 8..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:18 Download gff for
BS05681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ea-RA | 146..835 | 8..697 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:18 Download gff for
BS05681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6994416..6994484 | 8..76 | 95 | -> | Plus |
2R | 6996676..6996867 | 77..268 | 100 | -> | Plus |
2R | 6996931..6997092 | 269..430 | 100 | -> | Plus |
2R | 6997159..6997353 | 431..625 | 100 | -> | Plus |
2R | 6997617..6997688 | 626..697 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:37:20 Download gff for
BS05681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2881921..2881989 | 8..76 | 95 | -> | Plus |
arm_2R | 2884181..2884372 | 77..268 | 100 | -> | Plus |
arm_2R | 2884436..2884597 | 269..430 | 100 | -> | Plus |
arm_2R | 2884664..2884858 | 431..625 | 100 | -> | Plus |
arm_2R | 2885122..2885193 | 626..697 | 100 | | Plus |
BS05681.complete Sequence
713 bp (713 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635216
> BS05681.complete
GAAGTTATCAGTCGACATGAGCTGCGGAATCTCCATGGTTAAATATATCC
TATTTATATTTAATTTGCTCTGTTCGATATGCGGCATATTGCTGATCGTA
TTCGGAGCTCTGCTGTTCAGCAAAGTCCGTAACATGGATGACTTCGCGGA
AGCCCTGCGAACCCAGCAGGTGCCCGTAACGATGATCATCCTGGGCACCA
TCATCCTGCTGATTTCCTGGTTCGGCTGCTGCGGAGCCATTCGGGAATCC
TACTGCATGTCCATGACGTACTCGATCTTGCTGTTCGTCCTGATGATTGG
CCAACTGGCTTTGGTGATCTACATGTGGGTGCAGAAGGACAAGTACCTGG
AGATCATGGGCGACGTGGTCGAGAAGGCCTGGAACCATCGCACCAGTCGT
TCCGACTACATGGACGCGATTCAGATCAGCATGAAATGCTGCGGACGCAG
TGGCTACACCGACTACGCCTACCAGGGCAAGTTCCCTCCCTCCTGCTGCA
GCGACACCAACAACTGCCGCTGGGAGACCGTCTACCGGCGGGGATGCAAG
GTCACCTTCGTTGAGTTCTGGGACAGGAACAGCGACATCATCAAGTATGC
CGGTCTGGTCATCGCCGCCATCGAATTTGTGGGATTCGTTTTCGCCTGTT
GCTTGGCGAACAGCATTCGGAACTATAGACGCCGTGCGGAATATTAAAAG
CTTTCTAGACCAT
BS05681.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ea-RC | 681 | CG18817-PC | 1..681 | 17..697 | 3405 | 100 | Plus |
Tsp42Ea-RB | 681 | CG18817-PB | 1..681 | 17..697 | 3405 | 100 | Plus |
Tsp42Ea-RA | 681 | CG18817-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ea-RC | 1107 | CG18817-RC | 144..824 | 17..697 | 3405 | 100 | Plus |
Tsp42Ea-RB | 1113 | CG18817-RB | 150..830 | 17..697 | 3405 | 100 | Plus |
Tsp42Ea-RA | 1118 | CG18817-RA | 155..835 | 17..697 | 3405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6997159..6997353 | 431..625 | 975 | 100 | Plus |
2R | 25286936 | 2R | 7003448..7003642 | 431..625 | 975 | 100 | Plus |
2R | 25286936 | 2R | 6996675..6996867 | 76..268 | 965 | 100 | Plus |
2R | 25286936 | 2R | 7002964..7003156 | 76..268 | 965 | 100 | Plus |
2R | 25286936 | 2R | 7003219..7003381 | 268..430 | 815 | 100 | Plus |
2R | 25286936 | 2R | 6996930..6997092 | 268..430 | 815 | 100 | Plus |
2R | 25286936 | 2R | 6997617..6997688 | 626..697 | 360 | 100 | Plus |
2R | 25286936 | 2R | 7003905..7003976 | 626..697 | 360 | 100 | Plus |
2R | 25286936 | 2R | 6994425..6994484 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:01:29 has no hits.
BS05681.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:31 Download gff for
BS05681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ea-RC | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:14 Download gff for
BS05681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ea-RC | 140..829 | 8..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:34 Download gff for
BS05681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ea-RA | 155..833 | 17..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:31 Download gff for
BS05681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ea-RC | 140..829 | 8..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:37 Download gff for
BS05681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ea-RA | 155..833 | 17..695 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:37 Download gff for
BS05681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6994425..6994484 | 17..76 | 100 | -> | Plus |
2R | 6996676..6996867 | 77..268 | 100 | -> | Plus |
2R | 6996931..6997092 | 269..430 | 100 | -> | Plus |
2R | 6997159..6997353 | 431..625 | 100 | -> | Plus |
2R | 6997617..6997686 | 626..695 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:34 Download gff for
BS05681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2881930..2881989 | 17..76 | 100 | -> | Plus |
arm_2R | 2884181..2884372 | 77..268 | 100 | -> | Plus |
arm_2R | 2884436..2884597 | 269..430 | 100 | -> | Plus |
arm_2R | 2884664..2884858 | 431..625 | 100 | -> | Plus |
arm_2R | 2885122..2885191 | 626..695 | 100 | | Plus |
BS05681.pep Sequence
Translation from 16 to 696
> BS05681.pep
MSCGISMVKYILFIFNLLCSICGILLIVFGALLFSKVRNMDDFAEALRTQ
QVPVTMIILGTIILLISWFGCCGAIRESYCMSMTYSILLFVLMIGQLALV
IYMWVQKDKYLEIMGDVVEKAWNHRTSRSDYMDAIQISMKCCGRSGYTDY
AYQGKFPPSCCSDTNNCRWETVYRRGCKVTFVEFWDRNSDIIKYAGLVIA
AIEFVGFVFACCLANSIRNYRRRAEY*
BS05681.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ea-PC | 226 | CG18817-PC | 1..226 | 1..226 | 1208 | 100 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 1..226 | 1..226 | 1208 | 100 | Plus |
Tsp42Ea-PA | 226 | CG18817-PA | 1..226 | 1..226 | 1208 | 100 | Plus |
Tsp42Ed-PB | 227 | CG12846-PB | 1..227 | 1..226 | 530 | 41.9 | Plus |
Tsp42Ed-PA | 227 | CG12846-PA | 1..227 | 1..226 | 530 | 41.9 | Plus |