Clone Sequence Records
BS05682.3prime Sequence
845 bp (738 high quality bases) assembled on 2005-12-02
> BS05682.3prime
ATGGTCTAGAAAGCTTTTAACGTATTTTCGGATATGGAGCCGAGCGATAT
CGCACGCTTTCACGAGATCGGGATCCAGTTTCGTAGTGAGCAGATGAATG
TGATCCCGAGCCCGAGGTGGTTGGTCGATATGACGATGATGAACGACCGT
TGCTTGGTTTTGCTGGATAGGCCGCCGCGTAGGAAGAGGAGGACGAGTGG
GGGTGATACTCACGCCGATAGTCGCGCTCGTAGGAGCTACTGTCATACTG
GGCGTGGTGGGTCGAGTGCTTTGATGTTTGGGGCGGCGGTGTGGCATAGC
GATCATATTCTCCATGGTGGTCATATAGCTCGTGGTCCCGTGATCTGTGC
GTCTTTACGATCCCATAGTTGGGATCGTCCATCACATATCGAGCCTTCTC
CAGAATCGAATAGACTTTGGGCTTTGAAGAAGCAGGGGGCGGGGTGCGGG
AACTGTAGGCGCCATGATCGCCATAGGATTTGGAATAGTGGTGAGACTTC
TTGTACATGCGCTCCTTGCCATCCATCTCGCGTAGTTGCTCCAACCGAAT
GTCGTCGTTGGCGTCGGGTATCATAAACTTGCGGATCTCGCCTAGCGCAT
AGCTGATCCTGTGATAGGCCTCCGCTGGAGGGGCCACCGTGGATATCTCC
ACGTGCAAATCGCGGCTGAGATGGGCGTACTTTGGATTTCCGGAGCTGCG
AAGCTCCTCCTCCTTACCGTGGTCGCGCATCGAGTTGCGCCCCATAACCA
CCATTTTGCACATAGTCTCTTCCTGCAGCTGCCGCAGTGTGTTGCCCTTG
GGCCCCAGGATCTTGCCCACGAAATTGAACTTGGGGTACTCCTTG
BS05682.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3613-PA | 1191 | qkr58E-1-RA | 363..1191 | 845..17 | 4120 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-1-RA | 1592 | CG3613-RA | 486..1314 | 845..17 | 4130 | 99.9 | Minus |
qkr58E-1-RC | 2122 | CG3613-RC | 486..1168 | 845..163 | 3400 | 99.9 | Minus |
qkr58E-1-RD | 1902 | CG3613-RD | 486..1117 | 845..214 | 3145 | 99.8 | Minus |
qkr58E-1-RC | 2122 | CG3613-RC | 1927..2074 | 164..17 | 740 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22414570..22414968 | 447..845 | 1980 | 99.7 | Plus |
2R | 25286936 | 2R | 22414101..22414286 | 163..348 | 930 | 100 | Plus |
2R | 25286936 | 2R | 22413195..22413342 | 17..164 | 740 | 100 | Plus |
2R | 25286936 | 2R | 22414408..22414510 | 345..447 | 515 | 100 | Plus |
2R | 25286936 | 2R | 22466682..22466811 | 831..702 | 245 | 79.2 | Minus |
2R | 25286936 | 2R | 17471170..17471359 | 831..642 | 245 | 75.3 | Minus |
2R | 25286936 | 2R | 22595151..22595289 | 831..693 | 230 | 77.7 | Minus |
2R | 25286936 | 2R | 21773807..21773943 | 831..695 | 190 | 75.9 | Minus |
2R | 25286936 | 2R | 22416544..22416611 | 832..765 | 190 | 85.3 | Minus |
2R | 25286936 | 2R | 22651051..22651189 | 831..693 | 185 | 75.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:59:56 has no hits.
BS05682.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:58 Download gff for
BS05682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3613-PA | 363..1191 | 17..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:20 Download gff for
BS05682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3613-PA | 363..1191 | 17..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:48 Download gff for
BS05682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 486..1314 | 17..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:52 Download gff for
BS05682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 486..1314 | 17..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:52 Download gff for
BS05682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22413195..22413340 | 17..162 | 100 | <- | Plus |
2R | 22414101..22414282 | 163..344 | 100 | <- | Plus |
2R | 22414408..22414509 | 345..446 | 100 | <- | Plus |
2R | 22414570..22414968 | 447..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:48 Download gff for
BS05682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18300700..18300845 | 17..162 | 100 | <- | Plus |
arm_2R | 18301606..18301787 | 163..344 | 100 | <- | Plus |
arm_2R | 18301913..18302014 | 345..446 | 100 | <- | Plus |
arm_2R | 18302075..18302473 | 447..845 | 99 | | Plus |
BS05682.5prime Sequence
827 bp (782 high quality bases) assembled on 2005-12-02
> BS05682.5prime
GAAGTTATCAGTCGACATGCCGCGCGACTACGACAGAGACTACAACGAGG
ACGCCGCCGACTACAAGCGGAAGCGACGCGACGAGGAGCCAGCGGCTACC
GGTGCTCCAGAGACCCCTGAGGCGGATGGCGGCGGACACACCACCAGCCA
CGCCGCCCTGCGGGACACGCCCCAGCTGAATGAGAAGACCAACGCGTATC
TGCAGGAGTGCCTGCTGGAAAAGAAGACGCTCGAGAAGAAGCACATCATC
ACCAAGCGCTTACTTGACGACGAGGTGGAGAAGATCTTGGTCAGCGGACG
CATACCAAAGCCCGAGATATATGCCAACGTGTACAGCGAAAAGCCCATCC
GCGTGGCCCAGAAAGTCTTGTTCCCCATCAAGGAGTACCCCAAGTTCAAT
TTCGTTGGCAAGATCCTGGGGCCCAAGGGCAACACACTGCGGCAGCTGCA
GGAAGAGACTATGTGCAAAATGGTGGTTATGGGGCGCAACTCGATGCGCG
ACCACGGTAAGGAGGAGGAGCTTCGCAGCTCCGGAAATCCAAAGTACGCC
CATCTCAGCCGCGATTTGCACGTGGAGATATCCACGGTGGCCCCTCCAGC
GGAGGCCTATCACAGGATCAGCTATGCGCTAGGCGAGATCCGCAAGTTTA
TGATACCCGACGCCAACGACGACATTCGGTTGGAGCAACTACGCGAGATG
GATGGCAAGGAGCGCATGTACAAGAAGTCTCACCACTATTCCAAATCCTA
TGGCGATCATGGCGCCTACAGTTCCCGCACCCCGCCCCCTGCTTCTTCAA
AGCCCCAAGTCTATTCGATTCTGGAGA
BS05682.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3613-PA | 1191 | qkr58E-1-RA | 1..811 | 17..827 | 4030 | 99.8 | Plus |
CG4021-PA | 960 | CG4021-RA | 286..326 | 389..429 | 155 | 95.1 | Plus |
CG3584-PA | 963 | qkr58E-3-RA | 283..326 | 389..432 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-1-RD | 1902 | CG3613-RD | 124..934 | 17..827 | 4040 | 99.9 | Plus |
qkr58E-1-RC | 2122 | CG3613-RC | 124..934 | 17..827 | 4040 | 99.9 | Plus |
qkr58E-1-RA | 1592 | CG3613-RA | 124..934 | 17..827 | 4040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22414570..22415075 | 777..272 | 2530 | 100 | Minus |
2R | 25286936 | 2R | 22415140..22415395 | 272..17 | 1280 | 100 | Minus |
2R | 25286936 | 2R | 17471170..17471359 | 393..582 | 260 | 75.8 | Plus |
2R | 25286936 | 2R | 22595151..22595289 | 393..531 | 245 | 78.4 | Plus |
2R | 25286936 | 2R | 22414460..22414510 | 827..777 | 240 | 98 | Minus |
2R | 25286936 | 2R | 22466682..22466811 | 393..522 | 230 | 78.5 | Plus |
2R | 25286936 | 2R | 21773807..21773943 | 393..529 | 205 | 76.6 | Plus |
2R | 25286936 | 2R | 22651051..22651189 | 393..531 | 200 | 76.3 | Plus |
2R | 25286936 | 2R | 22410945..22411053 | 501..393 | 185 | 78 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:26:01 has no hits.
BS05682.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:59 Download gff for
BS05682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3613-PA | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:21 Download gff for
BS05682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3613-PA | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:38:01 Download gff for
BS05682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 124..933 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:52 Download gff for
BS05682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 124..933 | 17..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:52 Download gff for
BS05682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22414461..22414509 | 778..826 | 97 | <- | Minus |
2R | 22414570..22415074 | 273..777 | 100 | <- | Minus |
2R | 22415140..22415395 | 17..272 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:38:01 Download gff for
BS05682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18301966..18302014 | 778..826 | 97 | <- | Minus |
arm_2R | 18302075..18302579 | 273..777 | 100 | <- | Minus |
arm_2R | 18302645..18302900 | 17..272 | 100 | | Minus |
BS05682.complete Sequence
1223 bp (1223 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635217
> BS05682.complete
GAAGTTATCAGTCGACATGCCGCGCGACTACGACAGAGACTACAACGAGG
ACGCCGCCGACTACAAGCGGAAGCGACGCGACGAGGAGCCAGCGGCTACC
GGTGCTCCAGAGACCCCTGAGGCGGATGGCGGCGGACACACCACCAGCCA
CGCCGCCCTGCGGGACACGCCCCAGCTGAATGAGAAGACCAACGCGTATC
TGCAGGAGTGCCTGCTGGAAAAGAAGACGCTCGAGAAGAAGCACATCATC
ACCAAGCGCTTACTTGACGACGAGGTGGAGAAGATCTTGGTCAGCGGACG
CATACCAAAGCCCGAGATATATGCCAACGTGTACAGCGAAAAGCCCATCC
GCGTGGCCCAGAAAGTCTTGTTCCCCATCAAGGAGTACCCCAAGTTCAAT
TTCGTTGGCAAGATCCTGGGGCCCAAGGGCAACACACTGCGGCAGCTGCA
GGAAGAGACTATGTGCAAAATGGTGGTTATGGGGCGCAACTCGATGCGCG
ACCACGGTAAGGAGGAGGAGCTTCGCAGCTCCGGAAATCCAAAGTACGCC
CATCTCAGCCGCGATTTGCACGTGGAGATATCCACGGTGGCCCCTCCAGC
GGAGGCCTATCACAGGATCAGCTATGCGCTAGGCGAGATCCGCAAGTTTA
TGATACCCGACGCCAACGACGACATTCGGTTGGAGCAACTACGCGAGATG
GATGGCAAGGAGCGCATGTACAAGAAGTCTCACCACTATTCCAAATCCTA
TGGCGATCATGGCGCCTACAGTTCCCGCACCCCGCCCCCTGCTTCTTCAA
AGCCCAAAGTCTATTCGATTCTGGAGAAGGCTCGATATGTGATGGACGAT
CCCAACTATGGGATCGTAAAGACGCACAGATCACGGGACCACGAGCTATA
TGACCACCATGGAGAATATGATCGCTATGCCACACCGCCGCCCCAAACAT
CAAAGCACTCGACCCACCACGCCCAGTATGACAGTAGCTCCTACGAGCGC
GACTATCGGCGTGAGTATCACCCCCACTCGTCCTCCTCTTCCTACGCGGC
GGCCTATCCAGCAAAACCAAGCAACGGTCGTTCATCATCGTCATATCGAC
CAACCACCTCGGGCTCGGGATCACATTCATCTGCTCACTACGAAACTGGA
TCCCGATCTCGTGAAAGCGTGCGATATCGCTCGGCTCCATATCCGAAAAT
ACGTTAAAAGCTTTCTAGACCAT
BS05682.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-1-RA | 1191 | CG3613-PA | 1..1191 | 17..1207 | 5955 | 100 | Plus |
qkr58E-1-RC | 1074 | CG3613-PC | 1..1045 | 17..1061 | 5225 | 100 | Plus |
qkr58E-1-RD | 1140 | CG3613-PD | 1..994 | 17..1010 | 4970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-1-RA | 1592 | CG3613-RA | 124..1314 | 17..1207 | 5955 | 100 | Plus |
qkr58E-1-RC | 2122 | CG3613-RC | 124..1168 | 17..1061 | 5225 | 100 | Plus |
qkr58E-1-RD | 1902 | CG3613-RD | 124..1117 | 17..1010 | 4970 | 100 | Plus |
qkr58E-1-RC | 2122 | CG3613-RC | 1927..2074 | 1060..1207 | 740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22414570..22415075 | 777..272 | 2530 | 100 | Minus |
2R | 25286936 | 2R | 22415140..22415395 | 272..17 | 1280 | 100 | Minus |
2R | 25286936 | 2R | 22414101..22414286 | 1061..876 | 930 | 100 | Minus |
2R | 25286936 | 2R | 22413195..22413342 | 1207..1060 | 740 | 100 | Minus |
2R | 25286936 | 2R | 22414408..22414510 | 879..777 | 515 | 100 | Minus |
2R | 25286936 | 2R | 17471170..17471359 | 393..582 | 260 | 75.8 | Plus |
2R | 25286936 | 2R | 22595151..22595289 | 393..531 | 245 | 78.4 | Plus |
2R | 25286936 | 2R | 22466682..22466811 | 393..522 | 230 | 78.5 | Plus |
2R | 25286936 | 2R | 21773807..21773943 | 393..529 | 205 | 76.6 | Plus |
2R | 25286936 | 2R | 22651051..22651189 | 393..531 | 200 | 76.3 | Plus |
2R | 25286936 | 2R | 22410945..22411053 | 501..393 | 185 | 78 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:23:07 has no hits.
BS05682.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:15 Download gff for
BS05682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 1..1191 | 17..1207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:53 Download gff for
BS05682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 148..1338 | 17..1207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:03 Download gff for
BS05682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 124..1312 | 17..1205 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:15 Download gff for
BS05682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 148..1338 | 17..1207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:25 Download gff for
BS05682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 124..1312 | 17..1205 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:25 Download gff for
BS05682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22415140..22415395 | 17..272 | 100 | | Minus |
2R | 22413197..22413340 | 1062..1205 | 100 | <- | Minus |
2R | 22414101..22414282 | 880..1061 | 100 | <- | Minus |
2R | 22414408..22414509 | 778..879 | 100 | <- | Minus |
2R | 22414570..22415074 | 273..777 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:03 Download gff for
BS05682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18300702..18300845 | 1062..1205 | 100 | <- | Minus |
arm_2R | 18301606..18301787 | 880..1061 | 100 | <- | Minus |
arm_2R | 18301913..18302014 | 778..879 | 100 | <- | Minus |
arm_2R | 18302075..18302579 | 273..777 | 100 | <- | Minus |
arm_2R | 18302645..18302900 | 17..272 | 100 | | Minus |
BS05682.pep Sequence
Translation from 16 to 1206
> BS05682.pep
MPRDYDRDYNEDAADYKRKRRDEEPAATGAPETPEADGGGHTTSHAALRD
TPQLNEKTNAYLQECLLEKKTLEKKHIITKRLLDDEVEKILVSGRIPKPE
IYANVYSEKPIRVAQKVLFPIKEYPKFNFVGKILGPKGNTLRQLQEETMC
KMVVMGRNSMRDHGKEEELRSSGNPKYAHLSRDLHVEISTVAPPAEAYHR
ISYALGEIRKFMIPDANDDIRLEQLREMDGKERMYKKSHHYSKSYGDHGA
YSSRTPPPASSKPKVYSILEKARYVMDDPNYGIVKTHRSRDHELYDHHGE
YDRYATPPPQTSKHSTHHAQYDSSSYERDYRREYHPHSSSSSYAAAYPAK
PSNGRSSSSYRPTTSGSGSHSSAHYETGSRSRESVRYRSAPYPKIR*
BS05682.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-1-PA | 396 | CG3613-PA | 1..396 | 1..396 | 2108 | 100 | Plus |
qkr58E-1-PD | 379 | CG3613-PD | 1..379 | 1..396 | 1982 | 95.5 | Plus |
qkr58E-1-PC | 357 | CG3613-PC | 1..350 | 1..350 | 1865 | 99.7 | Plus |
qkr54B-PD | 428 | CG4816-PD | 14..425 | 9..374 | 730 | 43.4 | Plus |
qkr54B-PB | 428 | CG4816-PB | 14..425 | 9..374 | 730 | 43.4 | Plus |