Clone BS05682 Report

Search the DGRC for BS05682

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:82
Vector:pDNR-Dual
Associated Gene/Transcriptqkr58E-1-RA
Protein status:BS05682.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05682.3prime Sequence

845 bp (738 high quality bases) assembled on 2005-12-02

> BS05682.3prime
ATGGTCTAGAAAGCTTTTAACGTATTTTCGGATATGGAGCCGAGCGATAT
CGCACGCTTTCACGAGATCGGGATCCAGTTTCGTAGTGAGCAGATGAATG
TGATCCCGAGCCCGAGGTGGTTGGTCGATATGACGATGATGAACGACCGT
TGCTTGGTTTTGCTGGATAGGCCGCCGCGTAGGAAGAGGAGGACGAGTGG
GGGTGATACTCACGCCGATAGTCGCGCTCGTAGGAGCTACTGTCATACTG
GGCGTGGTGGGTCGAGTGCTTTGATGTTTGGGGCGGCGGTGTGGCATAGC
GATCATATTCTCCATGGTGGTCATATAGCTCGTGGTCCCGTGATCTGTGC
GTCTTTACGATCCCATAGTTGGGATCGTCCATCACATATCGAGCCTTCTC
CAGAATCGAATAGACTTTGGGCTTTGAAGAAGCAGGGGGCGGGGTGCGGG
AACTGTAGGCGCCATGATCGCCATAGGATTTGGAATAGTGGTGAGACTTC
TTGTACATGCGCTCCTTGCCATCCATCTCGCGTAGTTGCTCCAACCGAAT
GTCGTCGTTGGCGTCGGGTATCATAAACTTGCGGATCTCGCCTAGCGCAT
AGCTGATCCTGTGATAGGCCTCCGCTGGAGGGGCCACCGTGGATATCTCC
ACGTGCAAATCGCGGCTGAGATGGGCGTACTTTGGATTTCCGGAGCTGCG
AAGCTCCTCCTCCTTACCGTGGTCGCGCATCGAGTTGCGCCCCATAACCA
CCATTTTGCACATAGTCTCTTCCTGCAGCTGCCGCAGTGTGTTGCCCTTG
GGCCCCAGGATCTTGCCCACGAAATTGAACTTGGGGTACTCCTTG

BS05682.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3613-PA 1191 qkr58E-1-RA 363..1191 845..17 4120 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
qkr58E-1-RA 1592 CG3613-RA 486..1314 845..17 4130 99.9 Minus
qkr58E-1-RC 2122 CG3613-RC 486..1168 845..163 3400 99.9 Minus
qkr58E-1-RD 1902 CG3613-RD 486..1117 845..214 3145 99.8 Minus
qkr58E-1-RC 2122 CG3613-RC 1927..2074 164..17 740 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22414570..22414968 447..845 1980 99.7 Plus
2R 25286936 2R 22414101..22414286 163..348 930 100 Plus
2R 25286936 2R 22413195..22413342 17..164 740 100 Plus
2R 25286936 2R 22414408..22414510 345..447 515 100 Plus
2R 25286936 2R 22466682..22466811 831..702 245 79.2 Minus
2R 25286936 2R 17471170..17471359 831..642 245 75.3 Minus
2R 25286936 2R 22595151..22595289 831..693 230 77.7 Minus
2R 25286936 2R 21773807..21773943 831..695 190 75.9 Minus
2R 25286936 2R 22416544..22416611 832..765 190 85.3 Minus
2R 25286936 2R 22651051..22651189 831..693 185 75.5 Minus
Blast to na_te.dros performed on 2015-02-11 10:59:56 has no hits.

BS05682.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:58 Download gff for BS05682.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3613-PA 363..1191 17..845 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:20 Download gff for BS05682.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3613-PA 363..1191 17..845 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:48 Download gff for BS05682.3prime
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 486..1314 17..845 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:52 Download gff for BS05682.3prime
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 486..1314 17..845 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:52 Download gff for BS05682.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22413195..22413340 17..162 100 <- Plus
2R 22414101..22414282 163..344 100 <- Plus
2R 22414408..22414509 345..446 100 <- Plus
2R 22414570..22414968 447..845 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:48 Download gff for BS05682.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18300700..18300845 17..162 100 <- Plus
arm_2R 18301606..18301787 163..344 100 <- Plus
arm_2R 18301913..18302014 345..446 100 <- Plus
arm_2R 18302075..18302473 447..845 99   Plus

BS05682.5prime Sequence

827 bp (782 high quality bases) assembled on 2005-12-02

> BS05682.5prime
GAAGTTATCAGTCGACATGCCGCGCGACTACGACAGAGACTACAACGAGG
ACGCCGCCGACTACAAGCGGAAGCGACGCGACGAGGAGCCAGCGGCTACC
GGTGCTCCAGAGACCCCTGAGGCGGATGGCGGCGGACACACCACCAGCCA
CGCCGCCCTGCGGGACACGCCCCAGCTGAATGAGAAGACCAACGCGTATC
TGCAGGAGTGCCTGCTGGAAAAGAAGACGCTCGAGAAGAAGCACATCATC
ACCAAGCGCTTACTTGACGACGAGGTGGAGAAGATCTTGGTCAGCGGACG
CATACCAAAGCCCGAGATATATGCCAACGTGTACAGCGAAAAGCCCATCC
GCGTGGCCCAGAAAGTCTTGTTCCCCATCAAGGAGTACCCCAAGTTCAAT
TTCGTTGGCAAGATCCTGGGGCCCAAGGGCAACACACTGCGGCAGCTGCA
GGAAGAGACTATGTGCAAAATGGTGGTTATGGGGCGCAACTCGATGCGCG
ACCACGGTAAGGAGGAGGAGCTTCGCAGCTCCGGAAATCCAAAGTACGCC
CATCTCAGCCGCGATTTGCACGTGGAGATATCCACGGTGGCCCCTCCAGC
GGAGGCCTATCACAGGATCAGCTATGCGCTAGGCGAGATCCGCAAGTTTA
TGATACCCGACGCCAACGACGACATTCGGTTGGAGCAACTACGCGAGATG
GATGGCAAGGAGCGCATGTACAAGAAGTCTCACCACTATTCCAAATCCTA
TGGCGATCATGGCGCCTACAGTTCCCGCACCCCGCCCCCTGCTTCTTCAA
AGCCCCAAGTCTATTCGATTCTGGAGA

BS05682.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3613-PA 1191 qkr58E-1-RA 1..811 17..827 4030 99.8 Plus
CG4021-PA 960 CG4021-RA 286..326 389..429 155 95.1 Plus
CG3584-PA 963 qkr58E-3-RA 283..326 389..432 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
qkr58E-1-RD 1902 CG3613-RD 124..934 17..827 4040 99.9 Plus
qkr58E-1-RC 2122 CG3613-RC 124..934 17..827 4040 99.9 Plus
qkr58E-1-RA 1592 CG3613-RA 124..934 17..827 4040 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22414570..22415075 777..272 2530 100 Minus
2R 25286936 2R 22415140..22415395 272..17 1280 100 Minus
2R 25286936 2R 17471170..17471359 393..582 260 75.8 Plus
2R 25286936 2R 22595151..22595289 393..531 245 78.4 Plus
2R 25286936 2R 22414460..22414510 827..777 240 98 Minus
2R 25286936 2R 22466682..22466811 393..522 230 78.5 Plus
2R 25286936 2R 21773807..21773943 393..529 205 76.6 Plus
2R 25286936 2R 22651051..22651189 393..531 200 76.3 Plus
2R 25286936 2R 22410945..22411053 501..393 185 78 Minus
Blast to na_te.dros performed on 2015-02-11 16:26:01 has no hits.

BS05682.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:18:59 Download gff for BS05682.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3613-PA 1..810 17..826 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:21 Download gff for BS05682.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3613-PA 1..810 17..826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:38:01 Download gff for BS05682.5prime
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 124..933 17..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:52 Download gff for BS05682.5prime
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 124..933 17..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:52 Download gff for BS05682.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22414461..22414509 778..826 97 <- Minus
2R 22414570..22415074 273..777 100 <- Minus
2R 22415140..22415395 17..272 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:38:01 Download gff for BS05682.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18301966..18302014 778..826 97 <- Minus
arm_2R 18302075..18302579 273..777 100 <- Minus
arm_2R 18302645..18302900 17..272 100   Minus

BS05682.complete Sequence

1223 bp (1223 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635217

> BS05682.complete
GAAGTTATCAGTCGACATGCCGCGCGACTACGACAGAGACTACAACGAGG
ACGCCGCCGACTACAAGCGGAAGCGACGCGACGAGGAGCCAGCGGCTACC
GGTGCTCCAGAGACCCCTGAGGCGGATGGCGGCGGACACACCACCAGCCA
CGCCGCCCTGCGGGACACGCCCCAGCTGAATGAGAAGACCAACGCGTATC
TGCAGGAGTGCCTGCTGGAAAAGAAGACGCTCGAGAAGAAGCACATCATC
ACCAAGCGCTTACTTGACGACGAGGTGGAGAAGATCTTGGTCAGCGGACG
CATACCAAAGCCCGAGATATATGCCAACGTGTACAGCGAAAAGCCCATCC
GCGTGGCCCAGAAAGTCTTGTTCCCCATCAAGGAGTACCCCAAGTTCAAT
TTCGTTGGCAAGATCCTGGGGCCCAAGGGCAACACACTGCGGCAGCTGCA
GGAAGAGACTATGTGCAAAATGGTGGTTATGGGGCGCAACTCGATGCGCG
ACCACGGTAAGGAGGAGGAGCTTCGCAGCTCCGGAAATCCAAAGTACGCC
CATCTCAGCCGCGATTTGCACGTGGAGATATCCACGGTGGCCCCTCCAGC
GGAGGCCTATCACAGGATCAGCTATGCGCTAGGCGAGATCCGCAAGTTTA
TGATACCCGACGCCAACGACGACATTCGGTTGGAGCAACTACGCGAGATG
GATGGCAAGGAGCGCATGTACAAGAAGTCTCACCACTATTCCAAATCCTA
TGGCGATCATGGCGCCTACAGTTCCCGCACCCCGCCCCCTGCTTCTTCAA
AGCCCAAAGTCTATTCGATTCTGGAGAAGGCTCGATATGTGATGGACGAT
CCCAACTATGGGATCGTAAAGACGCACAGATCACGGGACCACGAGCTATA
TGACCACCATGGAGAATATGATCGCTATGCCACACCGCCGCCCCAAACAT
CAAAGCACTCGACCCACCACGCCCAGTATGACAGTAGCTCCTACGAGCGC
GACTATCGGCGTGAGTATCACCCCCACTCGTCCTCCTCTTCCTACGCGGC
GGCCTATCCAGCAAAACCAAGCAACGGTCGTTCATCATCGTCATATCGAC
CAACCACCTCGGGCTCGGGATCACATTCATCTGCTCACTACGAAACTGGA
TCCCGATCTCGTGAAAGCGTGCGATATCGCTCGGCTCCATATCCGAAAAT
ACGTTAAAAGCTTTCTAGACCAT

BS05682.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
qkr58E-1-RA 1191 CG3613-PA 1..1191 17..1207 5955 100 Plus
qkr58E-1-RC 1074 CG3613-PC 1..1045 17..1061 5225 100 Plus
qkr58E-1-RD 1140 CG3613-PD 1..994 17..1010 4970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
qkr58E-1-RA 1592 CG3613-RA 124..1314 17..1207 5955 100 Plus
qkr58E-1-RC 2122 CG3613-RC 124..1168 17..1061 5225 100 Plus
qkr58E-1-RD 1902 CG3613-RD 124..1117 17..1010 4970 100 Plus
qkr58E-1-RC 2122 CG3613-RC 1927..2074 1060..1207 740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22414570..22415075 777..272 2530 100 Minus
2R 25286936 2R 22415140..22415395 272..17 1280 100 Minus
2R 25286936 2R 22414101..22414286 1061..876 930 100 Minus
2R 25286936 2R 22413195..22413342 1207..1060 740 100 Minus
2R 25286936 2R 22414408..22414510 879..777 515 100 Minus
2R 25286936 2R 17471170..17471359 393..582 260 75.8 Plus
2R 25286936 2R 22595151..22595289 393..531 245 78.4 Plus
2R 25286936 2R 22466682..22466811 393..522 230 78.5 Plus
2R 25286936 2R 21773807..21773943 393..529 205 76.6 Plus
2R 25286936 2R 22651051..22651189 393..531 200 76.3 Plus
2R 25286936 2R 22410945..22411053 501..393 185 78 Minus
Blast to na_te.dros performed on 2014-11-27 10:23:07 has no hits.

BS05682.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:15 Download gff for BS05682.complete
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 1..1191 17..1207 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:53 Download gff for BS05682.complete
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 148..1338 17..1207 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:03 Download gff for BS05682.complete
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 124..1312 17..1205 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:15 Download gff for BS05682.complete
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 148..1338 17..1207 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:25 Download gff for BS05682.complete
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 124..1312 17..1205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:25 Download gff for BS05682.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22415140..22415395 17..272 100   Minus
2R 22413197..22413340 1062..1205 100 <- Minus
2R 22414101..22414282 880..1061 100 <- Minus
2R 22414408..22414509 778..879 100 <- Minus
2R 22414570..22415074 273..777 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:03 Download gff for BS05682.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18300702..18300845 1062..1205 100 <- Minus
arm_2R 18301606..18301787 880..1061 100 <- Minus
arm_2R 18301913..18302014 778..879 100 <- Minus
arm_2R 18302075..18302579 273..777 100 <- Minus
arm_2R 18302645..18302900 17..272 100   Minus

BS05682.pep Sequence

Translation from 16 to 1206

> BS05682.pep
MPRDYDRDYNEDAADYKRKRRDEEPAATGAPETPEADGGGHTTSHAALRD
TPQLNEKTNAYLQECLLEKKTLEKKHIITKRLLDDEVEKILVSGRIPKPE
IYANVYSEKPIRVAQKVLFPIKEYPKFNFVGKILGPKGNTLRQLQEETMC
KMVVMGRNSMRDHGKEEELRSSGNPKYAHLSRDLHVEISTVAPPAEAYHR
ISYALGEIRKFMIPDANDDIRLEQLREMDGKERMYKKSHHYSKSYGDHGA
YSSRTPPPASSKPKVYSILEKARYVMDDPNYGIVKTHRSRDHELYDHHGE
YDRYATPPPQTSKHSTHHAQYDSSSYERDYRREYHPHSSSSSYAAAYPAK
PSNGRSSSSYRPTTSGSGSHSSAHYETGSRSRESVRYRSAPYPKIR*

BS05682.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
qkr58E-1-PA 396 CG3613-PA 1..396 1..396 2108 100 Plus
qkr58E-1-PD 379 CG3613-PD 1..379 1..396 1982 95.5 Plus
qkr58E-1-PC 357 CG3613-PC 1..350 1..350 1865 99.7 Plus
qkr54B-PD 428 CG4816-PD 14..425 9..374 730 43.4 Plus
qkr54B-PB 428 CG4816-PB 14..425 9..374 730 43.4 Plus