Clone Sequence Records
BS05686.3prime Sequence
910 bp (801 high quality bases) assembled on 2005-12-02
> BS05686.3prime
ATGGTCTAGAAAGCTTCTAAACGCTGAACTTCTCCTTCTTCATCAGGTCG
TACACCACGGAGAAGTCCTTGTTGCCCAGACCCTTATCGCACAGCGACTG
GTAGACCTTGTGCGCCAGAGATCCCAGCGGGATGGGTGAGTTGGAAGCGT
TGGCCACTCCGGAGGCCAGACCCAGATCCTTGGTGATCAGAGCCGAGGAG
AAACCGCCGGCGTAGTCCCTGTTGGCTGGGGCACTGGGGCAGACTCCGGG
CACAGGGTTGTAGATCTCCGAGGCCCAGCAGCGTCCGGTGGAGGAGTTGA
TGATCTCGGCGAAGACATTGGCATCGAGACCCTGGCGCACCGCCAGATTC
ATGGCCTCCGAAACACCGATCATCGAGATGGCCAGCATCATGTTGTTGCA
CAGCTTGGCGGCCTGGCCCATGCCATAGACGCCGCAGTGGGTGATCTTCT
TGCCCATGCACTCTAGGACGGCCTTGACGGCATTGTACTCCGCCTCGGTG
CCGCCCACCATGAAGGTGAGGGTGGCCTGCTCGGCGCCGGGAACTCCGCC
GGAAACGGGGGCATCGATAAACCGAGCTCCCTTGGCGCTGATCTTCTTCT
GCAACGACTTGACCAAATCCGGCGAGATCGTCGACGAGTCAATGAAGATG
GTGTCCTTGTTGACGCCATCGGCAGTCATCTCATCGTAGGAGGCATCCAC
AATGGCATTGTTCGGCAGCATGGTGATCACAAAGTCCGAGTTCTTGGCCA
GCTCCGAGGTCTTGGCGTAGACGGTGGCTCCCTTGGCGGCCAGACCATCG
CAGGCGGGCTTGGAGATATCGAAGACATGCAGCTTGTGGCCGGCCTTGAT
TAGATTGCTGGCCATGTTGGCACCCATGTTGCCCAGACCCACGAAGCCGA
TGTTCTTGGC
BS05686.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15093-PB | 975 | CG15093-RB | 82..975 | 910..17 | 4470 | 100 | Minus |
| CG15093-PA | 975 | CG15093-RA | 82..975 | 910..17 | 4470 | 100 | Minus |
| CG15093-PC | 684 | CG15093-RC | 284..684 | 484..84 | 2005 | 100 | Minus |
| CG15093-PC | 684 | CG15093-RC | 82..284 | 910..708 | 1015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15093-RE | 1255 | CG15093-RE | 181..1074 | 910..17 | 4470 | 100 | Minus |
| CG15093-RA | 1310 | CG15093-RA | 236..1129 | 910..17 | 4470 | 100 | Minus |
| CG15093-RB | 1243 | CG15093-RB | 169..1062 | 910..17 | 4470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18775850..18776743 | 17..910 | 4470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:03:05 has no hits.
BS05686.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:07 Download gff for
BS05686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-PB | 82..975 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:31 Download gff for
BS05686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-PA | 82..975 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:59:46 Download gff for
BS05686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RB | 169..1068 | 8..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:54 Download gff for
BS05686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RB | 169..1068 | 8..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:54 Download gff for
BS05686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18775844..18776743 | 8..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:59:46 Download gff for
BS05686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14663349..14664248 | 8..910 | 99 | | Plus |
BS05686.5prime Sequence
919 bp (851 high quality bases) assembled on 2005-12-02
> BS05686.5prime
GAAGTTATCAGTCGACATGTCGCTCCGTGTGATGTCCCCCGCTATGCTGA
ATGCCTGGAGCCAGACCCTCGTGAGGGCCATGTCCACCCAGGGCGGAGCC
AAGAACATCGGCTTCGTGGGTCTGGGCAACATGGGTGCCAACATGGCCAG
CAATCTAATCAAGGCCGGCCACAAGCTGCATGTCTTCGATATCTCCAAGC
CCGCCTGCGATGGTCTGGCCGCCAAGGGAGCCACCGTCTACGCCAAGACC
TCGGAGCTGGCCAAGAACTCGGACTTTGTGATCACCATGCTGCCGAACAA
TGCCATTGTGGATGCCTCCTACGATGAGATGACTGCCGATGGCGTCAACA
AGGACACCATCTTCATTGACTCGTCGACGATCTCGCCGGATTTGGTCAAG
TCGTTGCAGAAGAAGATCAGCGCCAAGGGAGCTCGGTTTATCGATGCCCC
CGTTTCCGGCGGAGTTCCCGGCGCCGAGCAGGCCACCCTCACCTTCATGG
TGGGCGGCACCGAGGCGGAGTACAATGCCGTCAAGGCCGTCCTAGAGTGC
ATGGGCAAGAAGATCACCCACTGCGGCGTCTATGGCATGGGCCAGGCCGC
CAAGCTGTGCAACAACATGATGCTGGCCATCTCGATGATCGGTGTTTCGG
AGGCCATGAATCTGGCGGTGCGCCAGGGTCTCGATGCCAATGTCTTCGCC
GAGATCATCAACTCCTCCACCGGACGCTGCTGGGCCTCGGAGATCTACAA
CCCTGTGCCCGGAGTCTGCCCCAGTGCCCCAGCCAACAGGGACTACGCCG
GCGGTTTCTCCTCGGCTCTGATCACCAAGGATCTGGGTCTGGCCTCCGGA
GTGGGCAACGCTTCCAACTCACCCATCCCGCTGGGATCTCTGGCGCACAA
GGTCTACCAGTCGCTGTGC
BS05686.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15093-PB | 975 | CG15093-RB | 1..903 | 17..919 | 4490 | 99.8 | Plus |
| CG15093-PA | 975 | CG15093-RA | 1..903 | 17..919 | 4490 | 99.8 | Plus |
| CG15093-PC | 684 | CG15093-RC | 284..679 | 524..919 | 1955 | 99.7 | Plus |
| CG15093-PC | 684 | CG15093-RC | 1..284 | 17..300 | 1420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15093-RE | 1255 | CG15093-RE | 97..1002 | 14..919 | 4515 | 99.9 | Plus |
| CG15093-RA | 1310 | CG15093-RA | 152..1057 | 14..919 | 4515 | 99.9 | Plus |
| CG15093-RB | 1243 | CG15093-RB | 85..990 | 14..919 | 4515 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18775922..18776827 | 919..14 | 4515 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:11:31 has no hits.
BS05686.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:08 Download gff for
BS05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-PB | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:32 Download gff for
BS05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:48:22 Download gff for
BS05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RB | 80..990 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:48 Download gff for
BS05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RB | 80..990 | 9..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:48 Download gff for
BS05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18775922..18776834 | 5..919 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:48:22 Download gff for
BS05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14663427..14664339 | 5..919 | 99 | | Minus |
BS05686.complete Sequence
1007 bp (1007 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635218
> BS05686.complete
GAAGTTATCAGTCGACATGTCGCTCCGTGTGATGTCCCCCGCTATGCTGA
ATGCCTGGAGCCAGACCCTCGTGAGGGCCATGTCCACCCAGGGCGGAGCC
AAGAACATCGGCTTCGTGGGTCTGGGCAACATGGGTGCCAACATGGCCAG
CAATCTAATCAAGGCCGGCCACAAGCTGCATGTCTTCGATATCTCCAAGC
CCGCCTGCGATGGTCTGGCCGCCAAGGGAGCCACCGTCTACGCCAAGACC
TCGGAGCTGGCCAAGAACTCGGACTTTGTGATCACCATGCTGCCGAACAA
TGCCATTGTGGATGCCTCCTACGATGAGATGACTGCCGATGGCGTCAACA
AGGACACCATCTTCATTGACTCGTCGACGATCTCGCCGGATTTGGTCAAG
TCGTTGCAGAAGAAGATCAGCGCCAAGGGAGCTCGGTTTATCGATGCCCC
CGTTTCCGGCGGAGTTCCCGGCGCCGAGCAGGCCACCCTCACCTTCATGG
TGGGCGGCACCGAGGCGGAGTACAATGCCGTCAAGGCCGTCCTAGAGTGC
ATGGGCAAGAAGATCACCCACTGCGGCGTCTATGGCATGGGCCAGGCCGC
CAAGCTGTGCAACAACATGATGCTGGCCATCTCGATGATCGGTGTTTCGG
AGGCCATGAATCTGGCGGTGCGCCAGGGTCTCGATGCCAATGTCTTCGCC
GAGATCATCAACTCCTCCACCGGACGCTGCTGGGCCTCGGAGATCTACAA
CCCTGTGCCCGGAGTCTGCCCCAGTGCCCCAGCCAACAGGGACTACGCCG
GCGGTTTCTCCTCGGCTCTGATCACCAAGGATCTGGGTCTGGCCTCCGGA
GTGGCCAACGCTTCCAACTCACCCATCCCGCTGGGATCTCTGGCGCACAA
GGTCTACCAGTCGCTGTGCGATAAGGGTCTGGGCAACAAGGACTTCTCCG
TGGTGTACGACCTGATGAAGAAGGAGAAGTTCAGCGTTTAGAAGCTTTCT
AGACCAT
BS05686.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15093-RE | 975 | CG15093-PE | 1..975 | 17..991 | 4875 | 100 | Plus |
| CG15093-RA | 975 | CG15093-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
| CG15093-RB | 975 | CG15093-PB | 1..975 | 17..991 | 4875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15093-RE | 1255 | CG15093-RE | 97..1074 | 14..991 | 4890 | 100 | Plus |
| CG15093-RA | 1310 | CG15093-RA | 152..1129 | 14..991 | 4890 | 100 | Plus |
| CG15093-RB | 1243 | CG15093-RB | 85..1062 | 14..991 | 4890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18775850..18776827 | 991..14 | 4890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:01:32 has no hits.
BS05686.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:16 Download gff for
BS05686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RA | 1..975 | 17..991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:55 Download gff for
BS05686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RA | 123..1114 | 5..1000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:45 Download gff for
BS05686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RB | 88..1062 | 17..991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:17 Download gff for
BS05686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RA | 123..1114 | 5..1000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:35 Download gff for
BS05686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RB | 88..1062 | 17..991 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:35 Download gff for
BS05686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18775850..18776824 | 17..991 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:45 Download gff for
BS05686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14663355..14664329 | 17..991 | 100 | | Minus |
BS05686.pep Sequence
Translation from 16 to 990
> BS05686.pep
MSLRVMSPAMLNAWSQTLVRAMSTQGGAKNIGFVGLGNMGANMASNLIKA
GHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFVITMLPNNAIVDA
SYDEMTADGVNKDTIFIDSSTISPDLVKSLQKKISAKGARFIDAPVSGGV
PGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNN
MMLAISMIGVSEAMNLAVRQGLDANVFAEIINSSTGRCWASEIYNPVPGV
CPSAPANRDYAGGFSSALITKDLGLASGVANASNSPIPLGSLAHKVYQSL
CDKGLGNKDFSVVYDLMKKEKFSV*
BS05686.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15093-PE | 324 | CG15093-PE | 1..324 | 1..324 | 1651 | 100 | Plus |
| CG15093-PA | 324 | CG15093-PA | 1..324 | 1..324 | 1651 | 100 | Plus |
| CG15093-PB | 324 | CG15093-PB | 1..324 | 1..324 | 1651 | 100 | Plus |
| CG4747-PC | 602 | CG4747-PC | 316..597 | 29..314 | 199 | 22.1 | Plus |
| CG4747-PA | 602 | CG4747-PA | 316..597 | 29..314 | 199 | 22.1 | Plus |
