Clone Sequence Records
BS05687.5prime Sequence
894 bp (738 high quality bases) assembled on 2005-12-02
> BS05687.5prime
GAAGTTATCAGTCGACATGAAGTCGGTTATTATTCTCTTAGCCCTGGTGG
CTTTCTGCCACGCAGCACCTCTGGATGTCAAGGAGTCTACCTCTGAGGAG
CTCTCTAGGCCCAGTCCCATCAGCCCCGATGTGCTCGTTGATCCCAAGCC
CACCGCCAAGGTAGTCTTGCTGAAGGATGCTCCCGTCCTGAATCGCCAGA
GGCGTAATGAACCCAAGAAGCCCGACAGCGTGGAGGCCCACGAACAGCTG
CATCACTCGCAGCCGGCCGTTCCTATTCATGACCAGAAGCCTTCTCCGGC
TGGGCCACAGGACCACAAGCGCAAGAGGGAAGCTCACCACGAGGAGGGTC
ACCATGGTGACGATGCAGTGCCCCAGAAGGAGGAAGTGAAGCAAGCTCCC
GAGGACCATGACGCCAAGAAGGAAAAGAGAGAGGCTCACCATGAGGAGGG
TCACCAAGACCATGAGGCTCCTCATAAGGAGGAAGTGAAGCAGGCCCCCG
AAGCTCATGATGCCAAAAGGGAAAAGCGAGAGGCTCACCACGAGGAAGGC
CACCATGGTGATGATGCAGCTCCACATAAGGAGGAAGTGAAGCAGGCTCC
CGAAACACATGAGGACAAGAAGGAAAAGAGGGAAGCTCACCACGAGGAGG
GCCACAAGGATGAGGCAGGTGATCGTCCTCAGGTGGAGGATCTTTCGCTG
CCCCATGCCCTGCCCGCTGTGGCCCACACCGCCGAGCTGCCCAAGAAGCA
GGAAAAGCGCGAGACTGTGGAGAAACCCGACAGCGTGAAGGCCCGTGAGT
CGCTCCAGCACAATCCCCAGCGATCCCAGGAGCTCCACAAGGCCATCGAA
TCTCTGGCCGGTGGAAAGGCGCCGGAACAGCGTCCCAGCGCGAT
BS05687.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-PA | 1083 | CG6409-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-RB | 1544 | CG6409-RB | 368..1247 | 16..894 | 4375 | 99.9 | Plus |
CG6409-RA | 1212 | CG6409-RA | 36..915 | 16..894 | 4375 | 99.9 | Plus |
CG6409-RB | 1544 | CG6409-RB | 675..905 | 425..655 | 465 | 80.8 | Plus |
CG6409-RB | 1544 | CG6409-RB | 777..1007 | 323..553 | 465 | 80.8 | Plus |
CG6409-RA | 1212 | CG6409-RA | 445..675 | 323..553 | 465 | 80.8 | Plus |
CG6409-RA | 1212 | CG6409-RA | 343..573 | 425..655 | 465 | 80.8 | Plus |
CG6409-RB | 1544 | CG6409-RB | 885..1007 | 332..454 | 345 | 86.3 | Plus |
CG6409-RB | 1544 | CG6409-RB | 684..806 | 533..655 | 345 | 86.3 | Plus |
CG6409-RA | 1212 | CG6409-RA | 352..474 | 533..655 | 345 | 86.3 | Plus |
CG6409-RA | 1212 | CG6409-RA | 553..675 | 332..454 | 345 | 86.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:23:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10880996..10881862 | 894..29 | 4285 | 99.9 | Minus |
3L | 28110227 | 3L | 10881236..10881466 | 553..323 | 410 | 80.3 | Minus |
3L | 28110227 | 3L | 10881338..10881568 | 655..425 | 410 | 80.3 | Minus |
3L | 28110227 | 3L | 10881236..10881358 | 454..332 | 345 | 85.4 | Minus |
3L | 28110227 | 3L | 10881437..10881559 | 655..533 | 345 | 85.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:23:21 has no hits.
BS05687.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:10 Download gff for
BS05687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-PA | 1..879 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:35 Download gff for
BS05687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-PA | 1..879 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:37 Download gff for
BS05687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 31..915 | 11..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:47:16 Download gff for
BS05687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 31..915 | 11..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:47:16 Download gff for
BS05687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10880996..10881862 | 29..894 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:37 Download gff for
BS05687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10874096..10874962 | 29..894 | 99 | <- | Minus |
BS05687.3prime Sequence
760 bp (758 high quality bases) assembled on 2005-12-02
> BS05687.3prime
ATGGTCTAGAAAGCTTCTAGGCCTTAGCTTTCTCCTTGCTTTCCTCGGAA
CTGGAAGTGGACTTATCCGCGTGCTTGTTCTTCTCGAAGAGCTCGGCCAC
GGGAATGGGATGGGGGATGTGGAGATTGTGGATGGACGGAGTGGTGCTTT
CCAGCTCCGATTTGGTGGTGGATGGGAGATCGGTGGTGGTGGTGGCTTTG
GTTTGCGTGGGCACGGGAATATCGCGCTGGTGACGCTGTTCCGGCGCCTT
TCCACCGGCCAGAGATTCGATGGCCTTGTGGAGCTCCTGGGATCGCTGGG
GATTGTGCTGGAGCGACTCACGGGCCTTCACGCTGTCGGGTTTCTCCACA
GTCTCGCGCTTTTCCTGCTTCTTGGGCAGCTCGGCGGTGTGGGCCACAGC
GGGCAGGGCATGGGGCAGCGAAAGATCCTCCACCTGAGGACGATCACCTG
CCTCATCCTTGTGGCCCTCCTCGTGGTGAGCTTCCCTCTTTTCCTTCTTG
TCCTCATGTGTTTCGGGAGCCTGCTTCACTTCCTCCTTATGTGGAGCTGC
ATCATCACCATGGTGGCCTTCCTCGTGGTGAGCCTCTCGCTTTTCCCTTT
TGGCATCATGAGCTTCGGGGGCCTGCTTCACTTCCTCCTTATGAGGAGCC
TCATGGTCTTGGTGACCCTCCTCATGGTGAGCCTCTCTCTTTTCCTTCTT
GGCGTCATGGTCCTCGGGAGCTTGCTTCACTTCCTCCTTCTGGGGCACTG
CATCGTCACC
BS05687.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-PA | 1083 | CG6409-RA | 340..1083 | 760..17 | 3720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-RB | 1544 | CG6409-RB | 708..1451 | 760..17 | 3720 | 100 | Minus |
CG6409-RA | 1212 | CG6409-RA | 376..1119 | 760..17 | 3720 | 100 | Minus |
CG6409-RB | 1544 | CG6409-RB | 675..905 | 691..461 | 465 | 80.8 | Minus |
CG6409-RA | 1212 | CG6409-RA | 343..573 | 691..461 | 465 | 80.8 | Minus |
CG6409-RB | 1544 | CG6409-RB | 828..1007 | 739..563 | 415 | 82.8 | Minus |
CG6409-RA | 1212 | CG6409-RA | 496..675 | 739..563 | 415 | 82.8 | Minus |
CG6409-RB | 1544 | CG6409-RB | 684..806 | 583..461 | 345 | 86.3 | Minus |
CG6409-RA | 1212 | CG6409-RA | 352..474 | 583..461 | 345 | 86.3 | Minus |
CG6409-RB | 1544 | CG6409-RB | 909..1007 | 760..662 | 255 | 85 | Minus |
CG6409-RA | 1212 | CG6409-RA | 577..675 | 760..662 | 255 | 85 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10880792..10881535 | 17..760 | 3720 | 100 | Plus |
3L | 28110227 | 3L | 10881338..10881568 | 461..691 | 410 | 80.3 | Plus |
3L | 28110227 | 3L | 10881236..10881415 | 563..739 | 385 | 82.2 | Plus |
3L | 28110227 | 3L | 10881437..10881559 | 461..583 | 345 | 85.4 | Plus |
3L | 28110227 | 3L | 10881236..10881334 | 662..760 | 255 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:59:41 has no hits.
BS05687.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:09 Download gff for
BS05687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-PA | 340..1083 | 17..760 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:34 Download gff for
BS05687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-PA | 340..1083 | 17..760 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:07:16 Download gff for
BS05687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 376..1127 | 7..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:45:04 Download gff for
BS05687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 376..1127 | 7..760 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:45:04 Download gff for
BS05687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10880784..10881535 | 7..760 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:07:16 Download gff for
BS05687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10873884..10874635 | 7..760 | 99 | | Plus |
BS05687.complete Sequence
1115 bp (1115 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635219
> BS05687.complete
GAAGTTATCAGTCGACATGAAGTCGGTTATTATTCTCTTAGCCCTGGTGG
CTTTCTGCCACGCAGCACCTCTGGATGTCAAGGAGTCTACCTCTGAGGAG
CTCTCTAGGCCCAGTCCCATCAGCCCCGATGTGCTCGTTGATCCCAAGCC
CACCGCCAAGGTAGTCTTGCTGAAGGATGCTCCCGTCCTGAATCGCCAGA
GGCGTAATGAACCCAAGAAGCCCGACAGCGTGGAGGCCCACGAACAGCTG
CATCACTCGCAGCCGGCCGTTCCTATTCATGACCAGAAGCCTTCTCCGGC
TGGGCCACAGGACCACAAGCGCAAGAGGGAAGCTCACCACGAGGAGGGTC
ACCATGGTGACGATGCAGTGCCCCAGAAGGAGGAAGTGAAGCAAGCTCCC
GAGGACCATGACGCCAAGAAGGAAAAGAGAGAGGCTCACCATGAGGAGGG
TCACCAAGACCATGAGGCTCCTCATAAGGAGGAAGTGAAGCAGGCCCCCG
AAGCTCATGATGCCAAAAGGGAAAAGCGAGAGGCTCACCACGAGGAAGGC
CACCATGGTGATGATGCAGCTCCACATAAGGAGGAAGTGAAGCAGGCTCC
CGAAACACATGAGGACAAGAAGGAAAAGAGGGAAGCTCACCACGAGGAGG
GCCACAAGGATGAGGCAGGTGATCGTCCTCAGGTGGAGGATCTTTCGCTG
CCCCATGCCCTGCCCGCTGTGGCCCACACCGCCGAGCTGCCCAAGAAGCA
GGAAAAGCGCGAGACTGTGGAGAAACCCGACAGCGTGAAGGCCCGTGAGT
CGCTCCAGCACAATCCCCAGCGATCCCAGGAGCTCCACAAGGCCATCGAA
TCTCTGGCCGGTGGAAAGGCGCCGGAACAGCGTCACCAGCGCGATATTCC
CGTGCCCACGCAAACCAAAGCCACCACCACCACCGATCTCCCATCCACCA
CCAAATCGGAGCTGGAAAGCACCACTCCGTCCATCCACAATCTCCACATC
CCCCATCCCATTCCCGTGGCCGAGCTCTTCGAGAAGAACAAGCACGCGGA
TAAGTCCACTTCCAGTTCCGAGGAAAGCAAGGAGAAAGCTAAGGCCTAGA
AGCTTTCTAGACCAT
BS05687.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-RB | 1083 | CG6409-PB | 1..1083 | 17..1099 | 5415 | 100 | Plus |
CG6409-RA | 1083 | CG6409-PA | 1..1083 | 17..1099 | 5415 | 100 | Plus |
CG6409-RB | 1083 | CG6409-PB | 307..537 | 425..655 | 410 | 80.3 | Plus |
CG6409-RB | 1083 | CG6409-PB | 409..639 | 323..553 | 410 | 80.3 | Plus |
CG6409-RA | 1083 | CG6409-PA | 307..537 | 425..655 | 410 | 80.3 | Plus |
CG6409-RA | 1083 | CG6409-PA | 409..639 | 323..553 | 410 | 80.3 | Plus |
CG6409-RB | 1083 | CG6409-PB | 316..438 | 533..655 | 345 | 85.4 | Plus |
CG6409-RB | 1083 | CG6409-PB | 517..639 | 332..454 | 345 | 85.4 | Plus |
CG6409-RA | 1083 | CG6409-PA | 316..438 | 533..655 | 345 | 85.4 | Plus |
CG6409-RA | 1083 | CG6409-PA | 517..639 | 332..454 | 345 | 85.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-RB | 1544 | CG6409-RB | 368..1451 | 16..1099 | 5420 | 100 | Plus |
CG6409-RA | 1212 | CG6409-RA | 36..1119 | 16..1099 | 5420 | 100 | Plus |
CG6409-RB | 1544 | CG6409-RB | 675..905 | 425..655 | 410 | 80.3 | Plus |
CG6409-RB | 1544 | CG6409-RB | 777..1007 | 323..553 | 410 | 80.3 | Plus |
CG6409-RA | 1212 | CG6409-RA | 343..573 | 425..655 | 410 | 80.3 | Plus |
CG6409-RA | 1212 | CG6409-RA | 445..675 | 323..553 | 410 | 80.3 | Plus |
CG6409-RB | 1544 | CG6409-RB | 684..806 | 533..655 | 345 | 85.4 | Plus |
CG6409-RB | 1544 | CG6409-RB | 885..1007 | 332..454 | 345 | 85.4 | Plus |
CG6409-RA | 1212 | CG6409-RA | 352..474 | 533..655 | 345 | 85.4 | Plus |
CG6409-RA | 1212 | CG6409-RA | 553..675 | 332..454 | 345 | 85.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10880792..10881862 | 1099..29 | 5355 | 100 | Minus |
3L | 28110227 | 3L | 10881236..10881466 | 553..323 | 410 | 80.3 | Minus |
3L | 28110227 | 3L | 10881338..10881568 | 655..425 | 410 | 80.3 | Minus |
3L | 28110227 | 3L | 10881437..10881559 | 655..533 | 345 | 85.4 | Minus |
3L | 28110227 | 3L | 10881236..10881358 | 454..332 | 345 | 85.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:31:43 has no hits.
BS05687.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:18 Download gff for
BS05687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 1..1083 | 17..1099 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:57 Download gff for
BS05687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 28..1124 | 11..1109 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:51 Download gff for
BS05687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 37..1119 | 17..1099 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:18 Download gff for
BS05687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 28..1124 | 11..1109 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:05 Download gff for
BS05687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 37..1119 | 17..1099 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:05 Download gff for
BS05687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10880792..10881862 | 29..1099 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:51 Download gff for
BS05687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10873892..10874962 | 29..1099 | 100 | <- | Minus |
BS05687.pep Sequence
Translation from 16 to 1098
> BS05687.pep
MKSVIILLALVAFCHAAPLDVKESTSEELSRPSPISPDVLVDPKPTAKVV
LLKDAPVLNRQRRNEPKKPDSVEAHEQLHHSQPAVPIHDQKPSPAGPQDH
KRKREAHHEEGHHGDDAVPQKEEVKQAPEDHDAKKEKREAHHEEGHQDHE
APHKEEVKQAPEAHDAKREKREAHHEEGHHGDDAAPHKEEVKQAPETHED
KKEKREAHHEEGHKDEAGDRPQVEDLSLPHALPAVAHTAELPKKQEKRET
VEKPDSVKARESLQHNPQRSQELHKAIESLAGGKAPEQRHQRDIPVPTQT
KATTTTDLPSTTKSELESTTPSIHNLHIPHPIPVAELFEKNKHADKSTSS
SEESKEKAKA*
BS05687.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-PB | 360 | CG6409-PB | 1..360 | 1..360 | 1907 | 100 | Plus |
CG6409-PA | 360 | CG6409-PA | 1..360 | 1..360 | 1907 | 100 | Plus |