Clone BS05687 Report

Search the DGRC for BS05687

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG6409-RA
Protein status:BS05687.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05687.5prime Sequence

894 bp (738 high quality bases) assembled on 2005-12-02

> BS05687.5prime
GAAGTTATCAGTCGACATGAAGTCGGTTATTATTCTCTTAGCCCTGGTGG
CTTTCTGCCACGCAGCACCTCTGGATGTCAAGGAGTCTACCTCTGAGGAG
CTCTCTAGGCCCAGTCCCATCAGCCCCGATGTGCTCGTTGATCCCAAGCC
CACCGCCAAGGTAGTCTTGCTGAAGGATGCTCCCGTCCTGAATCGCCAGA
GGCGTAATGAACCCAAGAAGCCCGACAGCGTGGAGGCCCACGAACAGCTG
CATCACTCGCAGCCGGCCGTTCCTATTCATGACCAGAAGCCTTCTCCGGC
TGGGCCACAGGACCACAAGCGCAAGAGGGAAGCTCACCACGAGGAGGGTC
ACCATGGTGACGATGCAGTGCCCCAGAAGGAGGAAGTGAAGCAAGCTCCC
GAGGACCATGACGCCAAGAAGGAAAAGAGAGAGGCTCACCATGAGGAGGG
TCACCAAGACCATGAGGCTCCTCATAAGGAGGAAGTGAAGCAGGCCCCCG
AAGCTCATGATGCCAAAAGGGAAAAGCGAGAGGCTCACCACGAGGAAGGC
CACCATGGTGATGATGCAGCTCCACATAAGGAGGAAGTGAAGCAGGCTCC
CGAAACACATGAGGACAAGAAGGAAAAGAGGGAAGCTCACCACGAGGAGG
GCCACAAGGATGAGGCAGGTGATCGTCCTCAGGTGGAGGATCTTTCGCTG
CCCCATGCCCTGCCCGCTGTGGCCCACACCGCCGAGCTGCCCAAGAAGCA
GGAAAAGCGCGAGACTGTGGAGAAACCCGACAGCGTGAAGGCCCGTGAGT
CGCTCCAGCACAATCCCCAGCGATCCCAGGAGCTCCACAAGGCCATCGAA
TCTCTGGCCGGTGGAAAGGCGCCGGAACAGCGTCCCAGCGCGAT

BS05687.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-PA 1083 CG6409-RA 1..868 17..884 4340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-RB 1544 CG6409-RB 368..1247 16..894 4375 99.9 Plus
CG6409-RA 1212 CG6409-RA 36..915 16..894 4375 99.9 Plus
CG6409-RB 1544 CG6409-RB 675..905 425..655 465 80.8 Plus
CG6409-RB 1544 CG6409-RB 777..1007 323..553 465 80.8 Plus
CG6409-RA 1212 CG6409-RA 445..675 323..553 465 80.8 Plus
CG6409-RA 1212 CG6409-RA 343..573 425..655 465 80.8 Plus
CG6409-RB 1544 CG6409-RB 885..1007 332..454 345 86.3 Plus
CG6409-RB 1544 CG6409-RB 684..806 533..655 345 86.3 Plus
CG6409-RA 1212 CG6409-RA 352..474 533..655 345 86.3 Plus
CG6409-RA 1212 CG6409-RA 553..675 332..454 345 86.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10880996..10881862 894..29 4285 99.9 Minus
3L 28110227 3L 10881236..10881466 553..323 410 80.3 Minus
3L 28110227 3L 10881338..10881568 655..425 410 80.3 Minus
3L 28110227 3L 10881236..10881358 454..332 345 85.4 Minus
3L 28110227 3L 10881437..10881559 655..533 345 85.4 Minus
Blast to na_te.dros performed on 2015-02-12 20:23:21 has no hits.

BS05687.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:10 Download gff for BS05687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-PA 1..879 17..894 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:35 Download gff for BS05687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-PA 1..879 17..894 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:37 Download gff for BS05687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 31..915 11..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:47:16 Download gff for BS05687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 31..915 11..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:47:16 Download gff for BS05687.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10880996..10881862 29..894 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:37 Download gff for BS05687.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10874096..10874962 29..894 99 <- Minus

BS05687.3prime Sequence

760 bp (758 high quality bases) assembled on 2005-12-02

> BS05687.3prime
ATGGTCTAGAAAGCTTCTAGGCCTTAGCTTTCTCCTTGCTTTCCTCGGAA
CTGGAAGTGGACTTATCCGCGTGCTTGTTCTTCTCGAAGAGCTCGGCCAC
GGGAATGGGATGGGGGATGTGGAGATTGTGGATGGACGGAGTGGTGCTTT
CCAGCTCCGATTTGGTGGTGGATGGGAGATCGGTGGTGGTGGTGGCTTTG
GTTTGCGTGGGCACGGGAATATCGCGCTGGTGACGCTGTTCCGGCGCCTT
TCCACCGGCCAGAGATTCGATGGCCTTGTGGAGCTCCTGGGATCGCTGGG
GATTGTGCTGGAGCGACTCACGGGCCTTCACGCTGTCGGGTTTCTCCACA
GTCTCGCGCTTTTCCTGCTTCTTGGGCAGCTCGGCGGTGTGGGCCACAGC
GGGCAGGGCATGGGGCAGCGAAAGATCCTCCACCTGAGGACGATCACCTG
CCTCATCCTTGTGGCCCTCCTCGTGGTGAGCTTCCCTCTTTTCCTTCTTG
TCCTCATGTGTTTCGGGAGCCTGCTTCACTTCCTCCTTATGTGGAGCTGC
ATCATCACCATGGTGGCCTTCCTCGTGGTGAGCCTCTCGCTTTTCCCTTT
TGGCATCATGAGCTTCGGGGGCCTGCTTCACTTCCTCCTTATGAGGAGCC
TCATGGTCTTGGTGACCCTCCTCATGGTGAGCCTCTCTCTTTTCCTTCTT
GGCGTCATGGTCCTCGGGAGCTTGCTTCACTTCCTCCTTCTGGGGCACTG
CATCGTCACC

BS05687.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-PA 1083 CG6409-RA 340..1083 760..17 3720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-RB 1544 CG6409-RB 708..1451 760..17 3720 100 Minus
CG6409-RA 1212 CG6409-RA 376..1119 760..17 3720 100 Minus
CG6409-RB 1544 CG6409-RB 675..905 691..461 465 80.8 Minus
CG6409-RA 1212 CG6409-RA 343..573 691..461 465 80.8 Minus
CG6409-RB 1544 CG6409-RB 828..1007 739..563 415 82.8 Minus
CG6409-RA 1212 CG6409-RA 496..675 739..563 415 82.8 Minus
CG6409-RB 1544 CG6409-RB 684..806 583..461 345 86.3 Minus
CG6409-RA 1212 CG6409-RA 352..474 583..461 345 86.3 Minus
CG6409-RB 1544 CG6409-RB 909..1007 760..662 255 85 Minus
CG6409-RA 1212 CG6409-RA 577..675 760..662 255 85 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10880792..10881535 17..760 3720 100 Plus
3L 28110227 3L 10881338..10881568 461..691 410 80.3 Plus
3L 28110227 3L 10881236..10881415 563..739 385 82.2 Plus
3L 28110227 3L 10881437..10881559 461..583 345 85.4 Plus
3L 28110227 3L 10881236..10881334 662..760 255 83.8 Plus
Blast to na_te.dros performed on 2015-02-11 18:59:41 has no hits.

BS05687.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:09 Download gff for BS05687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-PA 340..1083 17..760 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:34 Download gff for BS05687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-PA 340..1083 17..760 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:07:16 Download gff for BS05687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 376..1127 7..760 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:45:04 Download gff for BS05687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 376..1127 7..760 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:45:04 Download gff for BS05687.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10880784..10881535 7..760 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:07:16 Download gff for BS05687.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10873884..10874635 7..760 99   Plus

BS05687.complete Sequence

1115 bp (1115 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635219

> BS05687.complete
GAAGTTATCAGTCGACATGAAGTCGGTTATTATTCTCTTAGCCCTGGTGG
CTTTCTGCCACGCAGCACCTCTGGATGTCAAGGAGTCTACCTCTGAGGAG
CTCTCTAGGCCCAGTCCCATCAGCCCCGATGTGCTCGTTGATCCCAAGCC
CACCGCCAAGGTAGTCTTGCTGAAGGATGCTCCCGTCCTGAATCGCCAGA
GGCGTAATGAACCCAAGAAGCCCGACAGCGTGGAGGCCCACGAACAGCTG
CATCACTCGCAGCCGGCCGTTCCTATTCATGACCAGAAGCCTTCTCCGGC
TGGGCCACAGGACCACAAGCGCAAGAGGGAAGCTCACCACGAGGAGGGTC
ACCATGGTGACGATGCAGTGCCCCAGAAGGAGGAAGTGAAGCAAGCTCCC
GAGGACCATGACGCCAAGAAGGAAAAGAGAGAGGCTCACCATGAGGAGGG
TCACCAAGACCATGAGGCTCCTCATAAGGAGGAAGTGAAGCAGGCCCCCG
AAGCTCATGATGCCAAAAGGGAAAAGCGAGAGGCTCACCACGAGGAAGGC
CACCATGGTGATGATGCAGCTCCACATAAGGAGGAAGTGAAGCAGGCTCC
CGAAACACATGAGGACAAGAAGGAAAAGAGGGAAGCTCACCACGAGGAGG
GCCACAAGGATGAGGCAGGTGATCGTCCTCAGGTGGAGGATCTTTCGCTG
CCCCATGCCCTGCCCGCTGTGGCCCACACCGCCGAGCTGCCCAAGAAGCA
GGAAAAGCGCGAGACTGTGGAGAAACCCGACAGCGTGAAGGCCCGTGAGT
CGCTCCAGCACAATCCCCAGCGATCCCAGGAGCTCCACAAGGCCATCGAA
TCTCTGGCCGGTGGAAAGGCGCCGGAACAGCGTCACCAGCGCGATATTCC
CGTGCCCACGCAAACCAAAGCCACCACCACCACCGATCTCCCATCCACCA
CCAAATCGGAGCTGGAAAGCACCACTCCGTCCATCCACAATCTCCACATC
CCCCATCCCATTCCCGTGGCCGAGCTCTTCGAGAAGAACAAGCACGCGGA
TAAGTCCACTTCCAGTTCCGAGGAAAGCAAGGAGAAAGCTAAGGCCTAGA
AGCTTTCTAGACCAT

BS05687.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-RB 1083 CG6409-PB 1..1083 17..1099 5415 100 Plus
CG6409-RA 1083 CG6409-PA 1..1083 17..1099 5415 100 Plus
CG6409-RB 1083 CG6409-PB 307..537 425..655 410 80.3 Plus
CG6409-RB 1083 CG6409-PB 409..639 323..553 410 80.3 Plus
CG6409-RA 1083 CG6409-PA 307..537 425..655 410 80.3 Plus
CG6409-RA 1083 CG6409-PA 409..639 323..553 410 80.3 Plus
CG6409-RB 1083 CG6409-PB 316..438 533..655 345 85.4 Plus
CG6409-RB 1083 CG6409-PB 517..639 332..454 345 85.4 Plus
CG6409-RA 1083 CG6409-PA 316..438 533..655 345 85.4 Plus
CG6409-RA 1083 CG6409-PA 517..639 332..454 345 85.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-RB 1544 CG6409-RB 368..1451 16..1099 5420 100 Plus
CG6409-RA 1212 CG6409-RA 36..1119 16..1099 5420 100 Plus
CG6409-RB 1544 CG6409-RB 675..905 425..655 410 80.3 Plus
CG6409-RB 1544 CG6409-RB 777..1007 323..553 410 80.3 Plus
CG6409-RA 1212 CG6409-RA 343..573 425..655 410 80.3 Plus
CG6409-RA 1212 CG6409-RA 445..675 323..553 410 80.3 Plus
CG6409-RB 1544 CG6409-RB 684..806 533..655 345 85.4 Plus
CG6409-RB 1544 CG6409-RB 885..1007 332..454 345 85.4 Plus
CG6409-RA 1212 CG6409-RA 352..474 533..655 345 85.4 Plus
CG6409-RA 1212 CG6409-RA 553..675 332..454 345 85.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10880792..10881862 1099..29 5355 100 Minus
3L 28110227 3L 10881236..10881466 553..323 410 80.3 Minus
3L 28110227 3L 10881338..10881568 655..425 410 80.3 Minus
3L 28110227 3L 10881437..10881559 655..533 345 85.4 Minus
3L 28110227 3L 10881236..10881358 454..332 345 85.4 Minus
Blast to na_te.dros performed on 2014-11-27 15:31:43 has no hits.

BS05687.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:18 Download gff for BS05687.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 1..1083 17..1099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:57 Download gff for BS05687.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 28..1124 11..1109 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:51 Download gff for BS05687.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 37..1119 17..1099 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:18 Download gff for BS05687.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 28..1124 11..1109 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:05 Download gff for BS05687.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 37..1119 17..1099 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:05 Download gff for BS05687.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10880792..10881862 29..1099 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:51 Download gff for BS05687.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10873892..10874962 29..1099 100 <- Minus

BS05687.pep Sequence

Translation from 16 to 1098

> BS05687.pep
MKSVIILLALVAFCHAAPLDVKESTSEELSRPSPISPDVLVDPKPTAKVV
LLKDAPVLNRQRRNEPKKPDSVEAHEQLHHSQPAVPIHDQKPSPAGPQDH
KRKREAHHEEGHHGDDAVPQKEEVKQAPEDHDAKKEKREAHHEEGHQDHE
APHKEEVKQAPEAHDAKREKREAHHEEGHHGDDAAPHKEEVKQAPETHED
KKEKREAHHEEGHKDEAGDRPQVEDLSLPHALPAVAHTAELPKKQEKRET
VEKPDSVKARESLQHNPQRSQELHKAIESLAGGKAPEQRHQRDIPVPTQT
KATTTTDLPSTTKSELESTTPSIHNLHIPHPIPVAELFEKNKHADKSTSS
SEESKEKAKA*

BS05687.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-PB 360 CG6409-PB 1..360 1..360 1907 100 Plus
CG6409-PA 360 CG6409-PA 1..360 1..360 1907 100 Plus