Clone Sequence Records
BS05688.3prime Sequence
768 bp (767 high quality bases) assembled on 2005-12-02
> BS05688.3prime
ATGGTCTAGAAAGCTTTCAGTTGGCCTTCTTCTGGGGTGAGCCGCTGGAT
CCACCGCCCAGGATCTTACGGCGCTGGGCGAACATGTGCAAGTACAACTG
CGGGAAGATGGGGATGTAGCCGAGCATGACGATCCACAGGAATCCAAAAT
ACGAGAAGGTGGCGTTCCACTTGTTGGGCATCACCACACTCCACACGCTG
TTCTCACGGGCATAGCTCTGGGCCCACCAGAAGCACAGCAGCTCCCCAGT
CACGCCGATGGGATACAGGACAATGAATGTGGTGTAGCGCAGGAACACCA
CAAAATGCGGCACCACCTTGACGATGTTCAGAGCGTAATATCCATATCGG
ATGATCTCAGTGATGGCCCAGGCCAGCAGGGCGATGGGCAGACCGGGTGA
AACCTTTCCAGTAGGCGTGGCCATCACCACGCCGACGACCACCATCATGC
GGCTGAACACCTGGAAGCCAGTGACCACCGGGTTCGACTTGACCAATCCA
AAAGAAGCATTGAGTATCTCCACGAACGCGGCATTCTGGAAGATGATCAC
GGCCAGCCGAGTATACTCCCACAACGTCACCTGGGCACGGAACTCCGGAC
CCTGCAATATGTAGTAGTTGACCAGCTGCCACAGGATGTAGCTCCATCCG
ACCACCTGGCCGGCGTTGTACGCAAACAGGTACAATTTAGTGACCGCCGA
CGGCTCCTTGGAAGCGCCTGGTTTGCTGGACTTGGACACTGCCTTTGCTG
ACATGTCGACTGATAACT
BS05688.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6746-PA | 738 | CG6746-RA | 1..738 | 754..17 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6746-RA | 1033 | CG6746-RA | 114..854 | 756..16 | 3705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12001413..12002153 | 16..756 | 3705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:52:27 has no hits.
BS05688.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:11 Download gff for
BS05688.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-PA | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:36 Download gff for
BS05688.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-PA | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:57 Download gff for
BS05688.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 105..858 | 11..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:47 Download gff for
BS05688.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 105..858 | 11..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:47 Download gff for
BS05688.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12001409..12002157 | 11..763 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:57 Download gff for
BS05688.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12001409..12002157 | 11..763 | 99 | | Plus |
BS05688.5prime Sequence
768 bp (740 high quality bases) assembled on 2005-12-02
> BS05688.5prime
GAAGTTATCAGTCGACATGTCAGCAAAGGCAGTGTCCAAGTCCAGCAAAC
CAGGCGCTTCCAAGGAGCCGTCGGCGGTCACTAAATTGTACCTGTTTGCG
TACAACGCCGGCCAGGTGGTCGGATGGAGCTACATCCTGTGGCAGCTGGT
CAACTACTACATATTGCAGGGTCCGGAGTTCCGTGCCCAGGTGACGTTGT
GGGAGTATACTCGGCTGGCCGTGATCATCTTCCAGAATGCCGCGTTCGTG
GAGATACTCAATGCTTCTTTTGGATTGGTCAAGTCGAACCCGGTGGTCAC
TGGCTTCCAGGTGTTCAGCCGCATGATGGTGGTCGTCGGCGTGGTGATGG
CCACGCCTACTGGAAAGGTTTCACCCGGTCTGCCCATCGCCCTGCTGGCC
TGGGCCATCACTGAGATCATCCGATATGGATATTACGCTCTGAACATCGT
CAAGGTGGTGCCGCATTTTGTGGTGTTCCTGCGCTACACCACATTCATTG
TCCTGTATCCCATCGGCGTGACTGGGGAGCTGCTGTGCTTCTGGTGGGCC
CAGAGCTATGCCCGTGAGAACAGCGTGTGGAGTGTGGTGATGCCCAACAA
GTGGAACGCCACCTTCTCGTATTTTGGATTCCTGTGGATCGTCATGCTCG
GCTACATCCCCATCTTCCCGCAGTTGTACTTGCACATGTTCGCCCAGCGC
CGTAAGATCCTGGGCGGTGGATCCAGCGGCTCACCCCAGAAGAAGGCCAA
CTGAAAGCTTTCTAGACC
BS05688.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6746-PA | 738 | CG6746-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:50:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6746-RA | 1033 | CG6746-RA | 114..854 | 15..755 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12001413..12002153 | 755..15 | 3705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:50:26 has no hits.
BS05688.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:12 Download gff for
BS05688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:37 Download gff for
BS05688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:22:40 Download gff for
BS05688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 105..858 | 8..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:36:47 Download gff for
BS05688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 105..858 | 8..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:36:47 Download gff for
BS05688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12001409..12002157 | 8..760 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:22:40 Download gff for
BS05688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12001409..12002157 | 8..760 | 99 | | Minus |
BS05688.complete Sequence
770 bp (770 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635220
> BS05688.complete
GAAGTTATCAGTCGACATGTCAGCAAAGGCAGTGTCCAAGTCCAGCAAAC
CAGGCGCTTCCAAGGAGCCGTCGGCGGTCACTAAATTGTACCTGTTTGCG
TACAACGCCGGCCAGGTGGTCGGATGGAGCTACATCCTGTGGCAGCTGGT
CAACTACTACATATTGCAGGGTCCGGAGTTCCGTGCCCAGGTGACGTTGT
GGGAGTATACTCGGCTGGCCGTGATCATCTTCCAGAATGCCGCGTTCGTG
GAGATACTCAATGCTTCTTTTGGATTGGTCAAGTCGAACCCGGTGGTCAC
TGGCTTCCAGGTGTTCAGCCGCATGATGGTGGTCGTCGGCGTGGTGATGG
CCACGCCTACTGGAAAGGTTTCACCCGGTCTGCCCATCGCCCTGCTGGCC
TGGGCCATCACTGAGATCATCCGATATGGATATTACGCTCTGAACATCGT
CAAGGTGGTGCCGCATTTTGTGGTGTTCCTGCGCTACACCACATTCATTG
TCCTGTATCCCATCGGCGTGACTGGGGAGCTGCTGTGCTTCTGGTGGGCC
CAGAGCTATGCCCGTGAGAACAGCGTGTGGAGTGTGGTGATGCCCAACAA
GTGGAACGCCACCTTCTCGTATTTTGGATTCCTGTGGATCGTCATGCTCG
GCTACATCCCCATCTTCCCGCAGTTGTACTTGCACATGTTCGCCCAGCGC
CGTAAGATCCTGGGCGGTGGATCCAGCGGCTCACCCCAGAAGAAGGCCAA
CTGAAAGCTTTCTAGACCAT
BS05688.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6746-RA | 738 | CG6746-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6746-RA | 1033 | CG6746-RA | 114..854 | 15..755 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12001413..12002153 | 755..15 | 3705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:15:38 has no hits.
BS05688.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:14 Download gff for
BS05688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:52 Download gff for
BS05688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 115..868 | 8..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:12 Download gff for
BS05688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 116..852 | 17..753 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:14 Download gff for
BS05688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 115..868 | 8..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:12 Download gff for
BS05688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 116..852 | 17..753 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:12 Download gff for
BS05688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12001415..12002151 | 17..753 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:12 Download gff for
BS05688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12001415..12002151 | 17..753 | 100 | | Minus |
BS05688.pep Sequence
Translation from 16 to 753
> BS05688.pep
MSAKAVSKSSKPGASKEPSAVTKLYLFAYNAGQVVGWSYILWQLVNYYIL
QGPEFRAQVTLWEYTRLAVIIFQNAAFVEILNASFGLVKSNPVVTGFQVF
SRMMVVVGVVMATPTGKVSPGLPIALLAWAITEIIRYGYYALNIVKVVPH
FVVFLRYTTFIVLYPIGVTGELLCFWWAQSYARENSVWSVVMPNKWNATF
SYFGFLWIVMLGYIPIFPQLYLHMFAQRRKILGGGSSGSPQKKAN*
BS05688.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6746-PA | 245 | CG6746-PA | 1..245 | 1..245 | 1283 | 100 | Plus |
| CG9267-PA | 371 | CG9267-PA | 149..366 | 23..241 | 241 | 29.7 | Plus |
