Clone BS05689 Report

Search the DGRC for BS05689

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG13920-RA
Protein status:BS05689.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05689.3prime Sequence

513 bp (512 high quality bases) assembled on 2005-12-02

> BS05689.3prime
ATGGTCTAGAAAGCTTCTAGTCCTGCTTTACGCCGTTCGCAGCAGGCTGC
GCTGCCGTCGTGGCCTCGTCCTGGAGGCGGGCGGTCTGGTACCAGACCAC
CAGGCGTCCGCCCAGCATGAAGGTGAAGACCAGCGCCGGACCGGAGCGCT
CGAACGGATCACTGACCATCCAGTGCTGGTAGATGCCCAGGAGCATCAAC
ACCAGCAGCGTAACGTTGGCCGTGTTTTTGACCTTATGATAGGGAATCAG
CGCCATGGCCAGGCCGCAGACGATCTCCAGGATGCCAACGGTGCGGCGGT
ACCATTTCGAGGGTATCTTCACTCCGAAGAGCGCCGTTAGTGGGAACACT
TTGGCATACTTCACGTACTCTGTGCGCAGGTCCTTGTAGAGATCCTTGCT
AATGTGCGGCGTCAGCTTGAGGGTGCCCACGAAGATGAAGAAGAGGCCCA
GCAGCACGGAGAGGCTCTTCAGCACGATCGTATTGGATGCAGGAGGCATG
TCGACTGATAACT

BS05689.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13920-PA 483 CG13920-RA 1..483 499..17 2415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13920-RC 1292 CG13920-RC 442..924 499..17 2415 100 Minus
CG13920-RA 1156 CG13920-RA 306..788 499..17 2415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1650913..1651133 237..17 1105 100 Minus
3L 28110227 3L 1650713..1650857 377..233 710 99.3 Minus
3L 28110227 3L 1649385..1649507 499..377 615 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:59:16 has no hits.

BS05689.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:13 Download gff for BS05689.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13920-PA 1..483 17..499 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:38 Download gff for BS05689.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13920-PA 1..483 17..499 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:45 Download gff for BS05689.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 380..872 7..499 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:11 Download gff for BS05689.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 306..798 7..499 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:11 Download gff for BS05689.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1649385..1649507 377..499 100 -> Minus
3L 1650714..1650852 238..376 100 -> Minus
3L 1650913..1651143 7..237 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:45 Download gff for BS05689.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1649385..1649507 377..499 100 -> Minus
arm_3L 1650714..1650852 238..376 100 -> Minus
arm_3L 1650913..1651143 7..237 98   Minus

BS05689.5prime Sequence

513 bp (512 high quality bases) assembled on 2005-12-02

> BS05689.5prime
GAAGTTATCAGTCGACATGCCTCCTGCATCCAATACGATCGTGCTGAAGA
GCCTCTCCGTGCTGCTGGGCCTCTTCTTCATCTTCGTGGGCACCCTCAAG
CTGACGCCGCACATTAGCAAGGATCTCTACAAGGACCTGCGCACAGAGTA
CGTGAAGTATGCCAAAGTGTTCCCACTAACGGCGCTCTTCGGAGTGAAGA
TACCCTCGAAATGGTACCGCCGCACCGTTGGCATCCTGGAGATCGTCTGC
GGCCTGGCCATGGCGCTGATTCCCTATCATAAGGTCAAAAACACGGCCAA
CGTTACGCTGCTGGTGTTGATGCTCCTGGGCATCTACCAGCACTGGATGG
TCAGTGATCCGTTCGAGCGCTCCGGTCCGGCGCTGGTCTTCACCTTCATG
CTGGGCGGACGCCTGGTGGTCTGGTACCAGACCGCCCGCCTCCAGGACGA
GGCCACGACGGCAGCGCAGCCTGCTGCGAACGGCGTAAAGCAGGACTAGA
AGCTTTCTAGACC

BS05689.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13920-PA 483 CG13920-RA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13920-RC 1292 CG13920-RC 442..924 17..499 2415 100 Plus
CG13920-RA 1156 CG13920-RA 306..788 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1650913..1651133 279..499 1105 100 Plus
3L 28110227 3L 1650713..1650857 139..283 710 99.3 Plus
3L 28110227 3L 1649385..1649507 17..139 615 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:32:19 has no hits.

BS05689.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:14 Download gff for BS05689.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13920-PA 1..483 17..499 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:40 Download gff for BS05689.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13920-PA 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:01 Download gff for BS05689.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 380..872 17..509 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:47:13 Download gff for BS05689.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 306..798 17..509 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:47:13 Download gff for BS05689.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1649385..1649507 17..139 100 -> Plus
3L 1650714..1650852 140..278 100 -> Plus
3L 1650913..1651143 279..509 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:01 Download gff for BS05689.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1649385..1649507 17..139 100 -> Plus
arm_3L 1650714..1650852 140..278 100 -> Plus
arm_3L 1650913..1651143 279..509 98   Plus

BS05689.complete Sequence

515 bp (515 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635221

> BS05689.complete
GAAGTTATCAGTCGACATGCCTCCTGCATCCAATACGATCGTGCTGAAGA
GCCTCTCCGTGCTGCTGGGCCTCTTCTTCATCTTCGTGGGCACCCTCAAG
CTGACGCCGCACATTAGCAAGGATCTCTACAAGGACCTGCGCACAGAGTA
CGTGAAGTATGCCAAAGTGTTCCCACTAACGGCGCTCTTCGGAGTGAAGA
TACCCTCGAAATGGTACCGCCGCACCGTTGGCATCCTGGAGATCGTCTGC
GGCCTGGCCATGGCGCTGATTCCCTATCATAAGGTCAAAAACACGGCCAA
CGTTACGCTGCTGGTGTTGATGCTCCTGGGCATCTACCAGCACTGGATGG
TCAGTGATCCGTTCGAGCGCTCCGGTCCGGCGCTGGTCTTCACCTTCATG
CTGGGCGGACGCCTGGTGGTCTGGTACCAGACCGCCCGCCTCCAGGACGA
GGCCACGACGGCAGCGCAGCCTGCTGCGAACGGCGTAAAGCAGGACTAGA
AGCTTTCTAGACCAT

BS05689.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13920-RC 483 CG13920-PC 1..483 17..499 2415 100 Plus
CG13920-RA 483 CG13920-PA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13920-RC 1292 CG13920-RC 442..924 17..499 2415 100 Plus
CG13920-RA 1156 CG13920-RA 306..788 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1650913..1651133 279..499 1105 100 Plus
3L 28110227 3L 1650713..1650857 139..283 710 99.3 Plus
3L 28110227 3L 1649385..1649507 17..139 615 100 Plus
Blast to na_te.dros performed on 2014-11-27 02:05:52 has no hits.

BS05689.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:46 Download gff for BS05689.complete
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:19 Download gff for BS05689.complete
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 443..935 17..509 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:14 Download gff for BS05689.complete
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 380..862 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:46 Download gff for BS05689.complete
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 443..935 17..509 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:17 Download gff for BS05689.complete
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 306..788 17..499 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:17 Download gff for BS05689.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1649385..1649507 17..139 100 -> Plus
3L 1650714..1650852 140..278 100 -> Plus
3L 1650913..1651133 279..499 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:14 Download gff for BS05689.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1650714..1650852 140..278 100 -> Plus
arm_3L 1650913..1651133 279..499 100   Plus
arm_3L 1649385..1649507 17..139 100 -> Plus

BS05689.pep Sequence

Translation from 16 to 498

> BS05689.pep
MPPASNTIVLKSLSVLLGLFFIFVGTLKLTPHISKDLYKDLRTEYVKYAK
VFPLTALFGVKIPSKWYRRTVGILEIVCGLAMALIPYHKVKNTANVTLLV
LMLLGIYQHWMVSDPFERSGPALVFTFMLGGRLVVWYQTARLQDEATTAA
QPAANGVKQD*

BS05689.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13920-PC 160 CG13920-PC 1..160 1..160 823 100 Plus
CG13920-PA 160 CG13920-PA 1..160 1..160 823 100 Plus