Clone Sequence Records
BS05689.3prime Sequence
513 bp (512 high quality bases) assembled on 2005-12-02
> BS05689.3prime
ATGGTCTAGAAAGCTTCTAGTCCTGCTTTACGCCGTTCGCAGCAGGCTGC
GCTGCCGTCGTGGCCTCGTCCTGGAGGCGGGCGGTCTGGTACCAGACCAC
CAGGCGTCCGCCCAGCATGAAGGTGAAGACCAGCGCCGGACCGGAGCGCT
CGAACGGATCACTGACCATCCAGTGCTGGTAGATGCCCAGGAGCATCAAC
ACCAGCAGCGTAACGTTGGCCGTGTTTTTGACCTTATGATAGGGAATCAG
CGCCATGGCCAGGCCGCAGACGATCTCCAGGATGCCAACGGTGCGGCGGT
ACCATTTCGAGGGTATCTTCACTCCGAAGAGCGCCGTTAGTGGGAACACT
TTGGCATACTTCACGTACTCTGTGCGCAGGTCCTTGTAGAGATCCTTGCT
AATGTGCGGCGTCAGCTTGAGGGTGCCCACGAAGATGAAGAAGAGGCCCA
GCAGCACGGAGAGGCTCTTCAGCACGATCGTATTGGATGCAGGAGGCATG
TCGACTGATAACT
BS05689.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13920-PA | 483 | CG13920-RA | 1..483 | 499..17 | 2415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:59:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13920-RC | 1292 | CG13920-RC | 442..924 | 499..17 | 2415 | 100 | Minus |
CG13920-RA | 1156 | CG13920-RA | 306..788 | 499..17 | 2415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1650913..1651133 | 237..17 | 1105 | 100 | Minus |
3L | 28110227 | 3L | 1650713..1650857 | 377..233 | 710 | 99.3 | Minus |
3L | 28110227 | 3L | 1649385..1649507 | 499..377 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:59:16 has no hits.
BS05689.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:13 Download gff for
BS05689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-PA | 1..483 | 17..499 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:38 Download gff for
BS05689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-PA | 1..483 | 17..499 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:45 Download gff for
BS05689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 380..872 | 7..499 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:11 Download gff for
BS05689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 306..798 | 7..499 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:11 Download gff for
BS05689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1649385..1649507 | 377..499 | 100 | -> | Minus |
3L | 1650714..1650852 | 238..376 | 100 | -> | Minus |
3L | 1650913..1651143 | 7..237 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:45 Download gff for
BS05689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1649385..1649507 | 377..499 | 100 | -> | Minus |
arm_3L | 1650714..1650852 | 238..376 | 100 | -> | Minus |
arm_3L | 1650913..1651143 | 7..237 | 98 | | Minus |
BS05689.5prime Sequence
513 bp (512 high quality bases) assembled on 2005-12-02
> BS05689.5prime
GAAGTTATCAGTCGACATGCCTCCTGCATCCAATACGATCGTGCTGAAGA
GCCTCTCCGTGCTGCTGGGCCTCTTCTTCATCTTCGTGGGCACCCTCAAG
CTGACGCCGCACATTAGCAAGGATCTCTACAAGGACCTGCGCACAGAGTA
CGTGAAGTATGCCAAAGTGTTCCCACTAACGGCGCTCTTCGGAGTGAAGA
TACCCTCGAAATGGTACCGCCGCACCGTTGGCATCCTGGAGATCGTCTGC
GGCCTGGCCATGGCGCTGATTCCCTATCATAAGGTCAAAAACACGGCCAA
CGTTACGCTGCTGGTGTTGATGCTCCTGGGCATCTACCAGCACTGGATGG
TCAGTGATCCGTTCGAGCGCTCCGGTCCGGCGCTGGTCTTCACCTTCATG
CTGGGCGGACGCCTGGTGGTCTGGTACCAGACCGCCCGCCTCCAGGACGA
GGCCACGACGGCAGCGCAGCCTGCTGCGAACGGCGTAAAGCAGGACTAGA
AGCTTTCTAGACC
BS05689.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13920-PA | 483 | CG13920-RA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13920-RC | 1292 | CG13920-RC | 442..924 | 17..499 | 2415 | 100 | Plus |
CG13920-RA | 1156 | CG13920-RA | 306..788 | 17..499 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1650913..1651133 | 279..499 | 1105 | 100 | Plus |
3L | 28110227 | 3L | 1650713..1650857 | 139..283 | 710 | 99.3 | Plus |
3L | 28110227 | 3L | 1649385..1649507 | 17..139 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:32:19 has no hits.
BS05689.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:14 Download gff for
BS05689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-PA | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:40 Download gff for
BS05689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-PA | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:01 Download gff for
BS05689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 380..872 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:47:13 Download gff for
BS05689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 306..798 | 17..509 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:47:13 Download gff for
BS05689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1649385..1649507 | 17..139 | 100 | -> | Plus |
3L | 1650714..1650852 | 140..278 | 100 | -> | Plus |
3L | 1650913..1651143 | 279..509 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:01 Download gff for
BS05689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1649385..1649507 | 17..139 | 100 | -> | Plus |
arm_3L | 1650714..1650852 | 140..278 | 100 | -> | Plus |
arm_3L | 1650913..1651143 | 279..509 | 98 | | Plus |
BS05689.complete Sequence
515 bp (515 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635221
> BS05689.complete
GAAGTTATCAGTCGACATGCCTCCTGCATCCAATACGATCGTGCTGAAGA
GCCTCTCCGTGCTGCTGGGCCTCTTCTTCATCTTCGTGGGCACCCTCAAG
CTGACGCCGCACATTAGCAAGGATCTCTACAAGGACCTGCGCACAGAGTA
CGTGAAGTATGCCAAAGTGTTCCCACTAACGGCGCTCTTCGGAGTGAAGA
TACCCTCGAAATGGTACCGCCGCACCGTTGGCATCCTGGAGATCGTCTGC
GGCCTGGCCATGGCGCTGATTCCCTATCATAAGGTCAAAAACACGGCCAA
CGTTACGCTGCTGGTGTTGATGCTCCTGGGCATCTACCAGCACTGGATGG
TCAGTGATCCGTTCGAGCGCTCCGGTCCGGCGCTGGTCTTCACCTTCATG
CTGGGCGGACGCCTGGTGGTCTGGTACCAGACCGCCCGCCTCCAGGACGA
GGCCACGACGGCAGCGCAGCCTGCTGCGAACGGCGTAAAGCAGGACTAGA
AGCTTTCTAGACCAT
BS05689.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13920-RC | 483 | CG13920-PC | 1..483 | 17..499 | 2415 | 100 | Plus |
CG13920-RA | 483 | CG13920-PA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13920-RC | 1292 | CG13920-RC | 442..924 | 17..499 | 2415 | 100 | Plus |
CG13920-RA | 1156 | CG13920-RA | 306..788 | 17..499 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1650913..1651133 | 279..499 | 1105 | 100 | Plus |
3L | 28110227 | 3L | 1650713..1650857 | 139..283 | 710 | 99.3 | Plus |
3L | 28110227 | 3L | 1649385..1649507 | 17..139 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:05:52 has no hits.
BS05689.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:46 Download gff for
BS05689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:19 Download gff for
BS05689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 443..935 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:14 Download gff for
BS05689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 380..862 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:46 Download gff for
BS05689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 443..935 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:17 Download gff for
BS05689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 306..788 | 17..499 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:17 Download gff for
BS05689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1649385..1649507 | 17..139 | 100 | -> | Plus |
3L | 1650714..1650852 | 140..278 | 100 | -> | Plus |
3L | 1650913..1651133 | 279..499 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:14 Download gff for
BS05689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1650714..1650852 | 140..278 | 100 | -> | Plus |
arm_3L | 1650913..1651133 | 279..499 | 100 | | Plus |
arm_3L | 1649385..1649507 | 17..139 | 100 | -> | Plus |
BS05689.pep Sequence
Translation from 16 to 498
> BS05689.pep
MPPASNTIVLKSLSVLLGLFFIFVGTLKLTPHISKDLYKDLRTEYVKYAK
VFPLTALFGVKIPSKWYRRTVGILEIVCGLAMALIPYHKVKNTANVTLLV
LMLLGIYQHWMVSDPFERSGPALVFTFMLGGRLVVWYQTARLQDEATTAA
QPAANGVKQD*
BS05689.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13920-PC | 160 | CG13920-PC | 1..160 | 1..160 | 823 | 100 | Plus |
CG13920-PA | 160 | CG13920-PA | 1..160 | 1..160 | 823 | 100 | Plus |