Clone BS05694 Report

Search the DGRC for BS05694

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG3223-RA
Protein status:BS05694.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05694.3prime Sequence

948 bp (770 high quality bases) assembled on 2005-12-02

> BS05694.3prime
ATGGTCTAGAAAGCTTTTAATTCATGCTCAGCATAAGCAGATTAATAGCG
TGTTCCACATTCCCATCGGAAAGTTCTAGATAACTAACGTTCTGAGTGTG
ATTAATGAAGCCCATGGCGGCCATGGTACGCAGTTGTTCGGTGAACCGAT
GGCGACGGTAGCGGCGTGGCAGCACATCACTGTCGTCTCCACCATCGTCC
TCGTCATCTACATCATCGGCTGGTGCTGTGGCGGCTTGCTCTGGTACTGG
TCCTTCTCCGGACTCCACCTCCATGTTCTCCACAGGCGCCGGTTGATCCT
GCGACAGGGACTGAAAAGCGCGGGCCAGCTCGTTGCGGAGCAACTCTGAG
GATATGGATCCGCTGCTGATGGCTCCACTGCTGCTTCCTGCGCCTGTTCC
CGCTGCTCCTCCAACGCCTGCTAATGGCGCCGAGGTGGTTCTAGGTCTTT
CATCACCCTGCACGGCCTCGTCCGCGTTTCTCTGCGCAATATTCGACAGT
GAATTAAACGGGGTCACGTTAGCCAATGCGTTAGCCAGTTGCTGGCGGCT
AATCTGACGGATGTTGGCCATCTCATCACGCCGATTGGCGGCCGCGGCAG
CTGCCACGGCTGTGCTGCTGCTTCCACCACTGCTGCTGCTGCCTGCACCC
AGAGAGTTTTCCTCCTCTGACGAAGTAGTAGACTCCGAAGCAGCTTGCTC
CTGCAACTGCGTGGCCGAGCTATTTCTGGCTAGCTCCTTGCGAATGGTGT
CCACTATGAATGGAGCGGCCTCGCAGATGAGGGGATAATCTTTAACGAGA
TTTTGGACCACTTCCGGCTCGTGCAGCATGTTGAACAGTACGGAGTCGCG
AATAAGGGCCTGGGCGCCCAGATTTCGCCTAAATTCCGGATACTCAGCGA
GTATCTTCTGCAGAATGTGAACCGCGAGGTAACGCTGATTTGCAGGTG

BS05694.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-PA 1248 CG3223-RA 347..1248 918..17 4510 100 Minus
CG3223-PA 1248 CG3223-RA 316..346 948..918 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-RA 1488 CG3223-RA 404..1336 948..17 4640 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8010178..8010866 705..17 3445 100 Minus
3R 32079331 3R 8009876..8010119 948..706 1170 99.6 Minus
Blast to na_te.dros performed on 2015-02-10 22:01:24 has no hits.

BS05694.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:24 Download gff for BS05694.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-PA 316..1248 17..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:53 Download gff for BS05694.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-PA 316..1248 17..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:21:16 Download gff for BS05694.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 404..1340 14..948 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:22 Download gff for BS05694.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 404..1340 14..948 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:22 Download gff for BS05694.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8009876..8010119 706..948 99 -> Minus
3R 8010178..8010870 14..705 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:21:16 Download gff for BS05694.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3835598..3835841 706..948 99 -> Minus
arm_3R 3835900..3836592 14..705 99   Minus

BS05694.5prime Sequence

902 bp (691 high quality bases) assembled on 2005-12-02

> BS05694.5prime
GAAGTTATCAGTCGACATGCATACCGTGTACGCGCTTCTGAAGAACAAGC
TGAGCGATGTGCATCCCCTACACAACATCGATCTGACGCGGGATGTGGCC
TACCTAAAGGCGGTGGTGACCAAAGAGATGCACTTGCAATTCGACGCCAG
CGAGTTGGAGATCATCCACCACGGACGCGTGCTGGAGGACGCAGACACCC
TCAACCGAACGCTGCAGCCCAACGCCGTGATCCACTGCTTTCAGAAGATT
AAACGTTACTCGCCGTATGTGCCGCCAGCCGCCGCCGAAATCAACACGAA
GCATATTCAAGAGCTGTTTTCGTTGACCTCGCACCTGCAAATCAGCGTTA
CCTCGCGGTTCAACATTCTGCAGAAGATACTCGCTGAGTATCCGGAATTT
AGGCGAAATCTGGGCGCCCAGGCCCTTATTCGCGACTCCGTACTGTTCAA
CATGCTGCACGAGCCGGAAGTGGTCCAAAATCTCGTTAAAGATTATCCCC
TCATCTGCGAGGCCGCTCCATTCATAGTGGACACCATTCGCAAGGAGCTA
GCCAGAAATAGCTCGGCCACGCAGTTGCAGGAGCAAGCTGCTTCGGAGTC
TACTACTTCGTCAGAGGAGGAAAACTCTCTGGGTGCAGGCAGCAGCAGCA
GTGGTGGAAGCAGCAGCACAGCCGTGGCAGCTGCCGCGGCCGCCAATCGG
CGTGATGAGATGGCCAACATCCGTCAGATTAGCCGCCAGCAACTGGCTAA
CGCATTGGCTAACGTGACCCCGTTTAAATCACTGTCGAATATTGCGCAGA
GAAACGCGAACGAGGCCGTGCANGGTGATGAAAGACCTAGAACCACCTCG
GCGCCATTAGCAGGCGTTGGAGGAGCAGCGGGAACAGGCGCAGGAAGCAG
CA

BS05694.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-PA 1248 CG3223-RA 1..886 17..902 4361 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-RA 1488 CG3223-RA 89..974 17..902 4389 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8009702..8010119 158..575 2090 100 Plus
3R 32079331 3R 8010178..8010504 576..902 1594 99.1 Plus
3R 32079331 3R 8009488..8009629 17..158 710 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:13:43 has no hits.

BS05694.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:25 Download gff for BS05694.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:54 Download gff for BS05694.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:48:49 Download gff for BS05694.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 78..973 7..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:08 Download gff for BS05694.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 78..973 7..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:08 Download gff for BS05694.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8009477..8009629 7..158 97 -> Plus
3R 8009703..8010119 159..575 100 -> Plus
3R 8010178..8010503 576..901 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:48:49 Download gff for BS05694.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3835199..3835351 7..158 97 -> Plus
arm_3R 3835425..3835841 159..575 100 -> Plus
arm_3R 3835900..3836225 576..901 99   Plus

BS05694.complete Sequence

1280 bp (1280 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635223

> BS05694.complete
GAAGTTATCAGTCGACATGCATACCGTGTACGCGCTTCTGAAGAACAAGC
TGAGCGATGTGCATCCCCTACACAACATCGATCTGACGCGGGATGTGGCC
TACCTAAAGGCGGTGGTGACCAAAGAGATGCACTTGCAATTCGACGCCAG
CGAGTTGGAGATCATCCACCACGGACGCGTGCTGGAGGACGCAGACACCC
TCAACCGAACGCTGCAGCCCAACGCCGTGATCCACTGCTTTCAGAAGATT
AAACGTTACTCGCCGTATGTGCCGCCAGCCGCCGCCGAAATCAACACGAA
GCATATTCAAGAGCTGTTTTCGTTGACCTCGCACCTGCAAATCAGCGTTA
CCTCGCGGTTCAACATTCTGCAGAAGATACTCGCTGAGTATCCGGAATTT
AGGCGAAATCTGGGCGCCCAGGCCCTTATTCGCGACTCCGTACTGTTCAA
CATGCTGCACGAGCCGGAAGTGGTCCAAAATCTCGTTAAAGATTATCCCC
TCATCTGCGAGGCCGCTCCATTCATAGTGGACACCATTCGCAAGGAGCTA
GCCAGAAATAGCTCGGCCACGCAGTTGCAGGAGCAAGCTGCTTCGGAGTC
TACTACTTCGTCAGAGGAGGAAAACTCTCTGGGTGCAGGCAGCAGCAGCA
GTGGTGGAAGCAGCAGCACAGCCGTGGCAGCTGCCGCGGCCGCCAATCGG
CGTGATGAGATGGCCAACATCCGTCAGATTAGCCGCCAGCAACTGGCTAA
CGCATTGGCTAACGTGACCCCGTTTAATTCACTGTCGAATATTGCGCAGA
GAAACGCGGACGAGGCCGTGCAGGGTGATGAAAGACCTAGAACCACCTCG
GCGCCATTAGCAGGCGTTGGAGGAGCAGCGGGAACAGGCGCAGGAAGCAG
CAGTGGAGCCATCAGCAGCGGATCCATATCCTCAGAGTTGCTCCGCAACG
AGCTGGCCCGCGCTTTTCAGTCCCTGTCGCAGGATCAACCGGCGCCTGTG
GAGAACATGGAGGTGGAGTCCGGAGAAGGACCAGTACCAGAGCAAGCCGC
CACAGCACCAGCCGATGATGTAGATGACGAGGACGATGGTGGAGACGACA
GTGATGTGCTGCCACGCCGCTACCGTCGCCATCGGTTCACCGAACAACTG
CGTACCATGGCCGCCATGGGCTTCATTAATCACACTCAGAACGTTAGTTA
TCTAGAACTTTCCGATGGGAATGTGGAACACGCTATTAATCTGCTTATGC
TGAGCATGAATTAAAAGCTTTCTAGACCAT

BS05694.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-RA 1248 CG3223-PA 1..1248 17..1264 6240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-RA 1488 CG3223-RA 89..1336 17..1264 6240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8010178..8010866 576..1264 3445 100 Plus
3R 32079331 3R 8009702..8010119 158..575 2090 100 Plus
3R 32079331 3R 8009488..8009629 17..158 710 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:04:57 has no hits.

BS05694.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:20 Download gff for BS05694.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 1..1248 17..1264 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:04:00 Download gff for BS05694.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 107..1369 7..1267 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:05 Download gff for BS05694.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 89..1334 17..1262 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:20 Download gff for BS05694.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 107..1369 7..1267 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:51 Download gff for BS05694.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 89..1334 17..1262 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:51 Download gff for BS05694.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8009488..8009629 17..158 100 -> Plus
3R 8009703..8010119 159..575 100 -> Plus
3R 8010178..8010864 576..1262 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:05 Download gff for BS05694.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3835210..3835351 17..158 100 -> Plus
arm_3R 3835425..3835841 159..575 100 -> Plus
arm_3R 3835900..3836586 576..1262 100   Plus

BS05694.pep Sequence

Translation from 16 to 1263

> BS05694.pep
MHTVYALLKNKLSDVHPLHNIDLTRDVAYLKAVVTKEMHLQFDASELEII
HHGRVLEDADTLNRTLQPNAVIHCFQKIKRYSPYVPPAAAEINTKHIQEL
FSLTSHLQISVTSRFNILQKILAEYPEFRRNLGAQALIRDSVLFNMLHEP
EVVQNLVKDYPLICEAAPFIVDTIRKELARNSSATQLQEQAASESTTSSE
EENSLGAGSSSSGGSSSTAVAAAAAANRRDEMANIRQISRQQLANALANV
TPFNSLSNIAQRNADEAVQGDERPRTTSAPLAGVGGAAGTGAGSSSGAIS
SGSISSELLRNELARAFQSLSQDQPAPVENMEVESGEGPVPEQAATAPAD
DVDDEDDGGDDSDVLPRRYRRHRFTEQLRTMAAMGFINHTQNVSYLELSD
GNVEHAINLLMLSMN*

BS05694.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-PA 415 CG3223-PA 1..415 1..415 2078 100 Plus